Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

30516993 .. 30518913

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1164900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCATCGCATGGGATTTTGTTGGCTTCACTTCTTGTGCTCTCTTGCTTTTCCCAAACCTCCTATGGGATTGTCCTCTTTTCTTCTCTCAAGGATAGTCTCCTTGTTACTGCTTCACACACAGAGAACCAGGTTCTGAAAGCCGGGATAGACAAGCTCACCGTTTCATGGGGTCTAAACCAGAGCTACGAAGCCGGCACCGACTCAACCTTCAAGACCATCAAGGTCAACTTATGCTTCGCGCAAGTGAGCCAAGTCGACCGCGGGTGGAGGAAGACCGTCGACAACCTCGCCAAGGACAAGACATGCCTGGTCAAGATCGTCGAAAGGCCGTACACCAGCAGCAAGTCCAACGACAGCTTCGACTGGATCATCGAGCGCGACGTGCCGGGCGCCACCTACTTCGTACGCGCCTACGCTTTCGACGCCGCCGGTCAGCAGGTGGCGTACGGTCAGACTACCGACGCTAAGAAGACCGCCAACTTGTTTGTGGTCGAGGGAATCACCGGGCGCCACCTGTCGCTTGACATTACGTCGGTTGCCTTCAGTGCTTTCTCGGTTTTGTCCCTGGCTTGTTTCTTTATTGCTGAGAAGAGAAGGGCAAAGTCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

205

Amino Acids

22.32

Weight (kDa)

8.86

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	27 - 170	3.3e-60	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	3 cut(s)	197, 392, 510
AccI	GTMKAC	2 cut(s)	258, 282
AccII	CGCG	4 cut(s)	242, 264, 381, 411
AciI	CCGC	4 cut(s)	262, 264, 429, 477
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	529
AcyI	GRCGYC	3 cut(s)	393, 426, 511
AfaI	GTAC	3 cut(s)	335, 408, 449
AfiI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
AgsI	TTSAA	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	532
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	3 cut(s)	129, 309, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	3 cut(s)	157, 186, 360
AluI	AGCT	3 cut(s)	157, 186, 360
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	342
AspLEI	GCGC	5 cut(s)	244, 381, 395, 413, 513
AsuC2I	CCSGG	3 cut(s)	145, 390, 508
AsuHPI	GGTGA	2 cut(s)	151, 496
BanI	GGYRCC	3 cut(s)	197, 392, 510
BbsI	GAAGAC	2 cut(s)	281, 479
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	3 cut(s)	131, 311, 569
BcnI	CCSGG	3 cut(s)	145, 390, 508
BcoDI	GTCTC	1 cut(s)	104
BfoI	RGCGCY	2 cut(s)	396, 514
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	343, 429
BlsI	GCNGC	2 cut(s)	344, 430
Bme1390I	CCNGG	6 cut(s)	131, 145, 311, 390, 508, 569
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	199, 394, 512
BmrFI	CCNGG	6 cut(s)	131, 145, 311, 390, 508, 569
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	281, 479
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	3 cut(s)	145, 390, 508
BsaHI	GRCGYC	3 cut(s)	393, 426, 511
BsaJI	CCNNGG	3 cut(s)	262, 294, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 168, 295
Bse118I	RCCGGY	2 cut(s)	194, 431
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	3 cut(s)	131, 311, 569
BseDI	CCNNGG	3 cut(s)	262, 294, 567
BseLI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	354
Bsh1236I	CGCG	4 cut(s)	242, 264, 381, 411
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	3 cut(s)	197, 392, 510
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	144, 195, 389, 432, 507
BsiWI	CGTACG	2 cut(s)	406, 447
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	318, 369
BspACI	CCGC	4 cut(s)	262, 264, 429, 477
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	4 cut(s)	242, 264, 381, 411
BspLI	GGNNCC	3 cut(s)	199, 394, 512
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	377
BspT107I	GGYRCC	3 cut(s)	197, 392, 510
BsrFI	RCCGGY	2 cut(s)	194, 431
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	2 cut(s)	194, 431
BssECI	CCNNGG	3 cut(s)	262, 294, 567
BssMI	GATC	2 cut(s)	318, 369
BssNI	GRCGYC	3 cut(s)	393, 426, 511
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	131, 311, 569
Bst4CI	ACNGT	3 cut(s)	163, 280, 452
Bst6I	CTCTTC	1 cut(s)	587
BstACI	GRCGYC	3 cut(s)	393, 426, 511
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	468, 588
BstDSI	CCRYGG	1 cut(s)	262
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstFNI	CGCG	4 cut(s)	242, 264, 381, 411
BstH2I	RGCGCY	2 cut(s)	396, 514
BstHHI	GCGC	5 cut(s)	244, 381, 395, 413, 513
BstKTI	GATC	2 cut(s)	321, 372
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	318, 369
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 425, 548
BstNI	CCWGG	3 cut(s)	131, 311, 569
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	6 cut(s)	129, 143, 309, 388, 506, 567
BstUI	CGCG	4 cut(s)	242, 264, 381, 411
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	2 cut(s)	281, 479
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	553
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	5 cut(s)	244, 381, 395, 413, 513
Cfr10I	RCCGGY	2 cut(s)	194, 431
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	2 cut(s)	434, 473
CsiI	ACCWGGT	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	334, 407, 448
CviAII	CATG	3 cut(s)	11, 168, 306
CviJI	RGCY	9 cut(s)	26, 143, 157, 186, 194, 252, 331, 360, 572
CviKI_1	RGCY	9 cut(s)	26, 143, 157, 186, 194, 252, 331, 360, 572
CviQI	GTAC	3 cut(s)	334, 407, 448
DdeI	CTNAG	2 cut(s)	468, 588
DinI	GGCGCC	2 cut(s)	394, 512
DpnI	GATC	2 cut(s)	320, 371
DpnII	GATC	2 cut(s)	318, 369
DriI	GACNNNNNGTC	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	587
Eam1105I	GACNNNNNGTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	129, 309, 567
EcoT14I	CCWWGG	1 cut(s)	294
EgeI	GGCGCC	2 cut(s)	394, 512
EheI	GGCGCC	2 cut(s)	394, 512
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	14, 171, 309
FaiI	YATR	6 cut(s)	12, 66, 169, 235, 307, 613
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	3 cut(s)	10, 167, 305
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	2 cut(s)	258, 282
Fnu4HI	GCNGC	2 cut(s)	343, 429
Fsp4HI	GCNGC	2 cut(s)	343, 429
GlaI	GCGC	5 cut(s)	243, 380, 394, 412, 512
GluI	GCNGC	2 cut(s)	343, 429
HaeII	RGCGCY	2 cut(s)	396, 514
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	5 cut(s)	144, 195, 389, 432, 507
HgaI	GACGC	2 cut(s)	434, 473
HhaI	GCGC	5 cut(s)	244, 381, 395, 413, 513
Hin1I	GRCGYC	3 cut(s)	393, 426, 511
Hin1II	CATG	3 cut(s)	14, 171, 309
Hin6I	GCGC	5 cut(s)	242, 379, 393, 411, 511
HinP1I	GCGC	5 cut(s)	242, 379, 393, 411, 511
HincII	GTYRAC	3 cut(s)	229, 259, 283
HindII	GTYRAC	3 cut(s)	229, 259, 283
HinfI	GANTC	2 cut(s)	203, 501
HpaII	CCGG	5 cut(s)	144, 195, 389, 432, 507
HphI	GGTGA	2 cut(s)	151, 496
Hpy166II	GTNNAC	4 cut(s)	229, 259, 283, 336
Hpy188I	TCNGA	2 cut(s)	138, 456
Hpy188III	TCNNGA	2 cut(s)	214, 316
Hpy8I	GTNNAC	4 cut(s)	229, 259, 283, 336
Hpy99I	CGWCG	6 cut(s)	284, 326, 386, 428, 467, 538
HpyAV	CCTTC	3 cut(s)	220, 553, 591
HpyCH4III	ACNGT	3 cut(s)	163, 280, 452
HpyCH4IV	ACGT	2 cut(s)	384, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 425, 548
HpyF3I	CTNAG	2 cut(s)	468, 588
HpySE526I	ACGT	2 cut(s)	384, 533
Hsp92I	GRCGYC	3 cut(s)	393, 426, 511
Hsp92II	CATG	3 cut(s)	14, 171, 309
HspAI	GCGC	5 cut(s)	242, 379, 393, 411, 511
KasI	GGCGCC	2 cut(s)	392, 510
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	318, 369
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	14
MabI	ACCWGGT	1 cut(s)	129
MaeII	ACGT	2 cut(s)	384, 533
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	320, 371
MboI	GATC	2 cut(s)	318, 369
MboII	GAAGA	4 cut(s)	75, 286, 484, 604
MhlI	GDGCHC	1 cut(s)	42
Mly113I	GGCGCC	2 cut(s)	393, 511
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	70, 86, 264, 299, 490
MroNI	GCCGGC	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	5 cut(s)	144, 195, 389, 432, 507
MspR9I	CCNGG	6 cut(s)	131, 145, 311, 390, 508, 569
MvaI	CCWGG	3 cut(s)	131, 311, 569
MvnI	CGCG	4 cut(s)	242, 264, 381, 411
MwoI	GCNNNNNNNGC	3 cut(s)	385, 425, 548
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	2 cut(s)	393, 511
NciI	CCSGG	3 cut(s)	145, 390, 508
NdeII	GATC	2 cut(s)	318, 369
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	14, 171, 309
NlaIV	GGNNCC	3 cut(s)	199, 394, 512
NspI	RCATGY	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 381
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	501
Pfl23II	CGTACG	2 cut(s)	406, 447
PkrI	GCNGC	2 cut(s)	344, 430
PleI	GAGTC	1 cut(s)	197
PluTI	GGCGCC	2 cut(s)	396, 514
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	129, 309, 567
PspGI	CCWGG	3 cut(s)	129, 309, 567
PspLI	CGTACG	2 cut(s)	406, 447
PspN4I	GGNNCC	3 cut(s)	199, 394, 512
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	335, 408, 449
RsaNI	GTAC	3 cut(s)	334, 407, 448
SacII	CCGCGG	1 cut(s)	265
SalI	GTCGAC	2 cut(s)	257, 281
SatI	GCNGC	2 cut(s)	343, 429
Sau3AI	GATC	2 cut(s)	318, 369
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	6 cut(s)	131, 145, 311, 390, 508, 569
SduI	GDGCHC	1 cut(s)	42
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	2 cut(s)	394, 512
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	4 cut(s)	262, 264, 429, 477
SspDI	GGCGCC	2 cut(s)	392, 510
StyD4I	CCNGG	6 cut(s)	129, 143, 309, 388, 506, 567
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	163, 280, 452
TaiI	ACGT	2 cut(s)	387, 536
TaqI	TCGA	7 cut(s)	258, 282, 324, 363, 375, 423, 495
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	501
TscAI	CASTG	1 cut(s)	553
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 487
XmiI	GTMKAC	2 cut(s)	258, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.