Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Forward (+)

56982470 .. 56983456

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCATCGCGTAGTGAGATTGTCTTGGCTTCCCTTCTTCTTTTTCTTTCATGCTTAGCAGAAACCTCTTATGCAAATGGCGTCGTCCTCTTTTCCTCTCTGCCCAACACTTTAGAAATGATCGTGTCACCCCACAAACCAGAGCAGGTTATGAAACCTGCGGGAGGTAGTTGGACTTTTGGTGGGACGTTAAAAGCTGGAGAAGACAAACTCAGCATCTCATGGCGTCTAAACCAGAGTTTCTCAGCGGGAACCACCGAATCGGGGTACAAGACCGTCAAGGTGAAGCTGTGCTACGCGCCGGTGAGTCAAGTGGACCGCGGGTGGAGGAAGACGGTGGACAACCTCGCAAAGGACAAGACGTGCCAGTTCAAGATCGAAACTAGACCATACAAACACGGCTCTAGCAAGTGGAAGTACATAGATTGGACCATAAAGCGCGACGTGCCTTCTGCTTCGTACTTCGTACGCGCCTACGCCTACGACGGCGCAGGTGTTGCGGTGGCTTACGGTCAAAGCACTGGACCGAAGAAAAACTACAACATATTTGAGGTCCAGGGGATCACCGGACGACACAAGACGCTTGATGTGGTATCGATTTGCTTTAGTGTTTTCTCCGTTTTGTCCTTGGTTGGGTTCTTTGTTGTTGAGAAGACAAGGGCAAAGCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

224

Amino Acids

24.73

Weight (kDa)

9.55

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	31 - 190	4.4e-53	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	3 cut(s)	136, 166, 482
AccII	CGCG	5 cut(s)	10, 299, 321, 441, 471
AciI	CCGC	5 cut(s)	161, 248, 319, 321, 500
AclWI	GGATC	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	81, 226
AfaI	GTAC	4 cut(s)	269, 419, 461, 468
AfiI	CCNNNNNNNGG	4 cut(s)	164, 264, 352, 633
AgsI	TTSAA	1 cut(s)	373
AjiI	CACGTC	2 cut(s)	363, 445
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	2 cut(s)	197, 289
AluI	AGCT	2 cut(s)	197, 289
AlwI	GGATC	1 cut(s)	569
AspLEI	GCGC	4 cut(s)	301, 441, 473, 491
AspS9I	GGNCC	4 cut(s)	316, 429, 524, 553
AsuHPI	GGTGA	4 cut(s)	120, 295, 316, 556
AvaII	GGWCC	4 cut(s)	316, 429, 524, 553
BarI	GAAGNNNNNNTAC	4 cut(s)	278, 310, 521, 553
BbsI	GAAGAC	3 cut(s)	210, 338, 659
BceAI	ACGGC	2 cut(s)	415, 502
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	2 cut(s)	384, 405
BfuAI	ACCTGC	3 cut(s)	136, 166, 482
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	4 cut(s)	316, 429, 524, 553
BmgBI	CACGTC	2 cut(s)	363, 445
BmgT120I	GGNCC	4 cut(s)	316, 429, 524, 553
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	2 cut(s)	14, 225
BpiI	GAAGAC	3 cut(s)	210, 338, 659
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	596
BsaHI	GRCGYC	2 cut(s)	81, 226
BsaJI	CCNNGG	3 cut(s)	319, 556, 627
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 264, 352, 633
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	367, 526
BseBI	CCWGG	1 cut(s)	557
BseCI	ATCGAT	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	319, 556, 627
BseLI	CCNNNNNNNGG	4 cut(s)	164, 264, 352, 633
BseMII	CTCAG	2 cut(s)	226, 258
BseNI	ACTGG	2 cut(s)	367, 526
Bsh1236I	CGCG	5 cut(s)	10, 299, 321, 441, 471
BshVI	ATCGAT	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	302, 567
BsiWI	CGTACG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	164, 264, 352, 633
BsmFI	GGGAC	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	120, 375, 561
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	5 cut(s)	161, 248, 319, 321, 500
BspCNI	CTCAG	2 cut(s)	225, 257
BspDI	ATCGAT	1 cut(s)	596
BspFNI	CGCG	5 cut(s)	10, 299, 321, 441, 471
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	3 cut(s)	136, 166, 482
BspPI	GGATC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	367, 526
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	319, 556, 627
BssMI	GATC	3 cut(s)	120, 375, 561
BssNI	GRCGYC	2 cut(s)	81, 226
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	3 cut(s)	277, 337, 512
BstACI	GRCGYC	2 cut(s)	81, 226
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	55, 212, 244
BstDSI	CCRYGG	1 cut(s)	319
BstENI	CCTNNNNNAGG	2 cut(s)	162, 350
BstFNI	CGCG	5 cut(s)	10, 299, 321, 441, 471
BstHHI	GCGC	4 cut(s)	301, 441, 473, 491
BstKTI	GATC	3 cut(s)	123, 378, 564
BstMBI	GATC	3 cut(s)	120, 375, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 497
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstUI	CGCG	5 cut(s)	10, 299, 321, 441, 471
BstV2I	GAAGAC	3 cut(s)	210, 338, 659
Bsu15I	ATCGAT	1 cut(s)	596
BsuTUI	ATCGAT	1 cut(s)	596
BtgI	CCRYGG	1 cut(s)	319
BtrI	CACGTC	2 cut(s)	363, 445
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	3 cut(s)	136, 166, 482
CfoI	GCGC	4 cut(s)	301, 441, 473, 491
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	4 cut(s)	316, 429, 524, 553
Cfr42I	CCGCGG	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	596
CseI	GACGC	3 cut(s)	70, 215, 589
Csp6I	GTAC	4 cut(s)	268, 418, 460, 467
CviAII	CATG	2 cut(s)	51, 222
CviJI	RGCY	6 cut(s)	29, 197, 289, 402, 506, 667
CviKI_1	RGCY	6 cut(s)	29, 197, 289, 402, 506, 667
CviQI	GTAC	4 cut(s)	268, 418, 460, 467
DdeI	CTNAG	3 cut(s)	55, 212, 244
DpnI	GATC	3 cut(s)	122, 377, 563
DpnII	GATC	3 cut(s)	120, 375, 561
Eco130I	CCWWGG	1 cut(s)	627
Eco47I	GGWCC	4 cut(s)	316, 429, 524, 553
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 350
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	54, 225
FaiI	YATR	8 cut(s)	52, 72, 152, 223, 391, 422, 434, 545
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	50, 221
FauI	CCCGC	3 cut(s)	154, 241, 314
FspBI	CTAG	2 cut(s)	384, 405
GlaI	GCGC	4 cut(s)	300, 440, 472, 490
GsuI	CTGGAG	1 cut(s)	219
HapII	CCGG	2 cut(s)	302, 567
HgaI	GACGC	3 cut(s)	70, 215, 589
HhaI	GCGC	4 cut(s)	301, 441, 473, 491
Hin1I	GRCGYC	2 cut(s)	81, 226
Hin1II	CATG	2 cut(s)	54, 225
Hin6I	GCGC	4 cut(s)	299, 439, 471, 489
HinP1I	GCGC	4 cut(s)	299, 439, 471, 489
HinfI	GANTC	2 cut(s)	260, 307
HpaII	CCGG	2 cut(s)	302, 567
HphI	GGTGA	4 cut(s)	120, 295, 316, 556
Hpy166II	GTNNAC	2 cut(s)	316, 340
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	316, 340
Hpy99I	CGWCG	3 cut(s)	86, 446, 488
HpyAV	CCTTC	2 cut(s)	44, 459
HpyCH4III	ACNGT	3 cut(s)	277, 337, 512
HpyCH4IV	ACGT	3 cut(s)	188, 362, 444
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 497
HpyF3I	CTNAG	3 cut(s)	55, 212, 244
HpySE526I	ACGT	3 cut(s)	188, 362, 444
Hsp92I	GRCGYC	2 cut(s)	81, 226
Hsp92II	CATG	2 cut(s)	54, 225
HspAI	GCGC	4 cut(s)	299, 439, 471, 489
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	120, 375, 561
LweI	GCATC	2 cut(s)	14, 225
MaeI	CTAG	2 cut(s)	384, 405
MaeII	ACGT	3 cut(s)	188, 362, 444
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	122, 377, 563
MboI	GATC	3 cut(s)	120, 375, 561
MboII	GAAGA	5 cut(s)	29, 215, 343, 541, 664
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	76, 98, 106, 158, 321, 356, 544
MseI	TTAA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	248, 321
MspI	CCGG	2 cut(s)	302, 567
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	5 cut(s)	10, 299, 321, 441, 471
MwoI	GCNNNNNNNGC	2 cut(s)	445, 497
NdeII	GATC	3 cut(s)	120, 375, 561
NlaIII	CATG	2 cut(s)	54, 225
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	260
Pfl23II	CGTACG	1 cut(s)	466
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspLI	CGTACG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	316, 429, 524, 553
RsaI	GTAC	4 cut(s)	269, 419, 461, 468
RsaNI	GTAC	4 cut(s)	268, 418, 460, 467
SacII	CCGCGG	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	3 cut(s)	120, 375, 561
Sau96I	GGNCC	4 cut(s)	316, 429, 524, 553
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	14, 225
Sfr303I	CCGCGG	1 cut(s)	322
SgrAI	CRCCGGYG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	322
SinI	GGWCC	4 cut(s)	316, 429, 524, 553
SsiI	CCGC	5 cut(s)	161, 248, 319, 321, 500
SspMI	CTAG	2 cut(s)	384, 405
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	277, 337, 512
TaiI	ACGT	3 cut(s)	191, 365, 447
TaqI	TCGA	2 cut(s)	378, 596
TaqII	GACCGA	1 cut(s)	541
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	39, 167
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	4 cut(s)	316, 429, 524, 553
XagI	CCTNNNNNAGG	2 cut(s)	162, 350
XspI	CTAG	2 cut(s)	384, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.