Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

10170800 .. 10171255

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTGAAGGTGAACCGTCACAATGGTAGGCCAAAATCTTTGACTACCCCCACAACCGTCAAGGTGAAGCTGTGCTACTCGCCGGTGAGTCAAGTGGACCACGGGTGGAGGAAGACGGTGGACAACCTCGCAAAGGACAAGACGTGCCAGTGCAAGATCAAAACTAGACCATACAAACATGGCTCTAGCAAGTGGAAGTATATAGATTGGACCATAAAGTGCGACGTGCCTTCTGCTTCGTACTTCATTCGGGCCTACGCTTACTACGGTGAAGGTGTTGCGGTGGCTTACGGTCAAAGCACGGGACGGAAGAAAAACTACATCATATTTGAGGTCCAGGGGATCACCGGACAACACAAGACGCTTGATGTGGTATCGATTTGCTTTAGTGCTTTCTCTATTTTGTCCTTGGTTGGGTTCTTTGTTGTTGAGAAGACAAGGGCAAAGCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

151

Amino Acids

17.06

Weight (kDa)

9.81

Isoelectric Point (pI)

19.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	16 - 117	3.3e-36	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	133, 414
AjiI	CACGTC	2 cut(s)	144, 226
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	2 cut(s)	29, 252
AspS9I	GGNCC	4 cut(s)	97, 210, 252, 334
AsuHPI	GGTGA	6 cut(s)	16, 22, 76, 97, 281, 337
AvaII	GGWCC	3 cut(s)	97, 210, 334
BarI	GAAGNNNNNNTAC	4 cut(s)	59, 91, 302, 334
BbsI	GAAGAC	2 cut(s)	119, 440
BciT130I	CCWGG	1 cut(s)	338
BfaI	CTAG	2 cut(s)	165, 186
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	3 cut(s)	97, 210, 334
BmgBI	CACGTC	2 cut(s)	144, 226
BmgT120I	GGNCC	4 cut(s)	97, 210, 252, 334
BmrFI	CCNGG	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	119, 440
Bsa29I	ATCGAT	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	100, 337, 408
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 414
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	3 cut(s)	100, 337, 408
BseLI	CCNNNNNNNGG	2 cut(s)	133, 414
BseNI	ACTGG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	31, 254
BshVI	ATCGAT	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	83, 348
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	133, 414
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	31, 254
Bsp143I	GATC	2 cut(s)	156, 342
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	31, 254
BspDI	ATCGAT	1 cut(s)	377
BspPI	GGATC	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	100, 337, 408
BssMI	GATC	2 cut(s)	156, 342
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	5 cut(s)	17, 58, 118, 269, 293
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	159, 345
BstMBI	GATC	2 cut(s)	156, 342
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV2I	GAAGAC	2 cut(s)	119, 440
Bsu15I	ATCGAT	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	31, 254
BsuTUI	ATCGAT	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	2 cut(s)	144, 226
BtsIMutI	CAGTG	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	97, 210, 252, 334
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	6 cut(s)	31, 70, 183, 254, 287, 448
CviKI_1	RGCY	6 cut(s)	31, 70, 183, 254, 287, 448
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	2 cut(s)	158, 344
DpnII	GATC	2 cut(s)	156, 342
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	3 cut(s)	97, 210, 334
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	172, 180, 201, 203, 215, 326
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	178
FspBI	CTAG	2 cut(s)	165, 186
HaeIII	GGCC	2 cut(s)	31, 254
HapII	CCGG	2 cut(s)	83, 348
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	83, 348
HphI	GGTGA	6 cut(s)	16, 22, 76, 97, 281, 337
Hpy166II	GTNNAC	3 cut(s)	13, 97, 121
Hpy8I	GTNNAC	3 cut(s)	13, 97, 121
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	240, 266
HpyCH4III	ACNGT	5 cut(s)	17, 58, 118, 269, 293
HpyCH4IV	ACGT	2 cut(s)	143, 225
HpyCH4V	TGCA	1 cut(s)	153
HpySE526I	ACGT	2 cut(s)	143, 225
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	156, 342
LpnPI	CCDG	5 cut(s)	96, 161, 323, 350, 361
MaeI	CTAG	2 cut(s)	165, 186
MaeII	ACGT	2 cut(s)	143, 225
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	158, 344
MboI	GATC	2 cut(s)	156, 342
MboII	GAAGA	3 cut(s)	124, 322, 445
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	102, 137, 325
MspI	CCGG	2 cut(s)	83, 348
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	156, 342
NlaIII	CATG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	4 cut(s)	97, 210, 252, 334
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
Sau3AI	GATC	2 cut(s)	156, 342
Sau96I	GGNCC	4 cut(s)	97, 210, 252, 334
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	9 cut(s)	12, 66, 72, 129, 146, 228, 277, 336, 455
SgrAI	CRCCGGYG	1 cut(s)	82
SinI	GGWCC	3 cut(s)	97, 210, 334
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	165, 186
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	5 cut(s)	17, 58, 118, 269, 293
TaiI	ACGT	2 cut(s)	146, 228
TaqI	TCGA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	97, 210, 334
XagI	CCTNNNNNAGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	165, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.