Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

19420651 .. 19421893

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCATCGCATGGGATTTTGTTGGCTTCACTTCTTGTGCTCTCTTGCTTATCCCAAACCTCCTATGGGATTGTCCTCTTTTCTTCTCTCAAGGATAGTCTATTTGTCACTGCTTCACACACAGAAAACCAGGTTCTGAAGGCAGGGATAGACAAGCTCACCGTTTCATGGGGTCTAAACCAGAGCTACGAAGCCGGCACCGACTCAACCTTCAAGACCATCAAGGTCAAGTTATGCTTCGCGCAGGTGAGCCAAGTCGACCGCGGATGGAGGAAGACCGTCGACAACCTCGCCATGGACAAGACATGCCTGTTCAAGATCGTCGAAAGGCCGTACACCAGCAACAAGTCCAACGACAGCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

123

Amino Acids

13.47

Weight (kDa)

8.82

Isoelectric Point (pI)

13.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	258, 282
AccII	CGCG	2 cut(s)	242, 264
AciI	CCGC	2 cut(s)	262, 264
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
AgsI	TTSAA	3 cut(s)	214, 316, 364
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	157, 186, 360
AluI	AGCT	3 cut(s)	157, 186, 360
Alw21I	GWGCWC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	151, 259
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	2 cut(s)	227, 261
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	262, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 168, 295
Bse118I	RCCGGY	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	262, 294
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
Bsh1236I	CGCG	2 cut(s)	242, 264
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	66, 168, 295
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	262, 264
BspANI	GGCC	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	242, 264
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	262, 294
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	163, 280
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	2 cut(s)	262, 294
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	2 cut(s)	242, 264
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	242, 264
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	2 cut(s)	262, 294
BtsCI	GGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	194
Cfr42I	CCGCGG	1 cut(s)	265
CsiI	ACCWGGT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	4 cut(s)	11, 168, 295, 306
CviJI	RGCY	7 cut(s)	26, 157, 186, 194, 252, 331, 360
CviKI_1	RGCY	7 cut(s)	26, 157, 186, 194, 252, 331, 360
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	14, 171, 298, 309
FaiI	YATR	6 cut(s)	12, 66, 169, 235, 296, 307
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	4 cut(s)	10, 167, 294, 305
FblI	GTMKAC	2 cut(s)	258, 282
FokI	GGATG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	14, 171, 298, 309
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	259, 283
HindII	GTYRAC	2 cut(s)	259, 283
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	151, 259
Hpy166II	GTNNAC	3 cut(s)	259, 283, 336
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	214, 316
Hpy8I	GTNNAC	3 cut(s)	259, 283, 336
Hpy99I	CGWCG	2 cut(s)	284, 326
HpyAV	CCTTC	2 cut(s)	133, 220
HpyCH4III	ACNGT	2 cut(s)	163, 280
Hsp92II	CATG	4 cut(s)	14, 171, 298, 309
HspAI	GCGC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	116, 129, 143, 194, 208, 230, 323, 352
LweI	GCATC	1 cut(s)	14
MabI	ACCWGGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	2 cut(s)	75, 286
MhlI	GDGCHC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	70, 86, 264, 299
MroNI	GCCGGC	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	242, 264
NaeI	GCCGGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	4 cut(s)	14, 171, 298, 309
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	265
SalI	GTCGAC	2 cut(s)	257, 281
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	62, 135, 159, 188, 212, 228, 249, 291, 362
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	2 cut(s)	262, 264
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	163, 280
TaqI	TCGA	3 cut(s)	258, 282, 324
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	258, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.