Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

16995555 .. 16996892

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCATCTCATGGGATTCTGTTGTCTTCACTTCTTCTGCTCTCCTGCTTATCCCAAACTTCCTATGGGATTGTCCTCTTTTCTTCTCTCAAGGATAGTCTCTTTGTTACTGCTTCACACACAGAAAACCAGGTTATGAAAGCAGGGATAGACAAGCTCACCGTTTCATGGGGGTTAAACCAGAGCTACGAAGCCGGCACCGACTCAACCTTCAAGACCATCAAGGTCAAGTTATGCTACGCGCCGGTGAGCCAAGTCGACCGCGGGTGGAGGAAGACCGTCGACAACCTCGCCAAGGACAAGACATGCCTGTTCAAGATCGTCGAAAGGTCGTACACCAGCAAGTCCAACGACTCCGTCGAGTGGACCATCGAGCGCGACGTGCCGGGCGCCACGTACTTCGTACGCGCCTACGCTTTCAACGCGGCGGGTCAGGAGGTGGCGTATGGTCAGACTACGAACGCCAAAAAGACCGCCAACTTGTTTGTGGTGGAGGGAATCAGCGGCCGCCACGTGTCGCTTGACATTGCATCGGTTGTCTTCAGTGTTTTCTCGGTTTTGTCCCTGGCTGGTTTCTTTATTGCAGAGAAGAGAAGGACAAAGTCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

204

Amino Acids

22.25

Weight (kDa)

9.22

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	604
AccB1I	GGYRCC	2 cut(s)	197, 389
AccI	GTMKAC	2 cut(s)	258, 282
AccII	CGCG	5 cut(s)	242, 264, 378, 408, 425
AciI	CCGC	7 cut(s)	262, 264, 425, 428, 474, 504, 508
AcoI	YGGCCR	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	526
AcvI	CACGTG	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	3 cut(s)	335, 398, 405
AfiI	CCNNNNNNNGG	3 cut(s)	168, 295, 363
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	3 cut(s)	214, 316, 421
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	129, 564
AluBI	AGCT	2 cut(s)	157, 186
AluI	AGCT	2 cut(s)	157, 186
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	505
AspLEI	GCGC	4 cut(s)	244, 378, 392, 410
AspS9I	GGNCC	1 cut(s)	366
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	151, 259
AvaII	GGWCC	1 cut(s)	366
BanI	GGYRCC	2 cut(s)	197, 389
BbrPI	CACGTG	1 cut(s)	514
BbsI	GAAGAC	3 cut(s)	18, 281, 532
BccI	CCATC	2 cut(s)	227, 377
BciT130I	CCWGG	2 cut(s)	131, 566
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	393
BisI	GCNGC	3 cut(s)	426, 505, 508
BlsI	GCNGC	3 cut(s)	427, 506, 509
Bme1390I	CCNGG	3 cut(s)	131, 387, 566
Bme18I	GGWCC	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	199, 391
BmrFI	CCNGG	3 cut(s)	131, 387, 566
BmsI	GCATC	2 cut(s)	14, 539
BpiI	GAAGAC	3 cut(s)	18, 281, 532
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	387
BsaAI	YACGTR	2 cut(s)	396, 514
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	262, 294, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 295, 363
Bse118I	RCCGGY	2 cut(s)	194, 244
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	131, 566
BseDI	CCNNGG	3 cut(s)	262, 294, 564
BseLI	CCNNNNNNNGG	3 cut(s)	168, 295, 363
BseMI	GCAATG	1 cut(s)	525
BseX3I	CGGCCG	1 cut(s)	505
Bsh1236I	CGCG	5 cut(s)	242, 264, 378, 408, 425
Bsh1285I	CGRYCG	2 cut(s)	262, 508
BshFI	GGCC	1 cut(s)	507
BshNI	GGYRCC	2 cut(s)	197, 389
BsiEI	CGRYCG	2 cut(s)	262, 508
BsiSI	CCGG	3 cut(s)	195, 245, 386
BsiWI	CGTACG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	3 cut(s)	168, 295, 363
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	7 cut(s)	262, 264, 425, 428, 474, 504, 508
BspANI	GGCC	1 cut(s)	507
BspFNI	CGCG	5 cut(s)	242, 264, 378, 408, 425
BspLI	GGNNCC	2 cut(s)	199, 391
BspT107I	GGYRCC	2 cut(s)	197, 389
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	2 cut(s)	194, 244
BssAI	RCCGGY	2 cut(s)	194, 244
BssECI	CCNNGG	3 cut(s)	262, 294, 564
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	131, 566
Bst4CI	ACNGT	2 cut(s)	163, 280
Bst6I	CTCTTC	1 cut(s)	584
BstACI	GRCGYC	1 cut(s)	390
BstBAI	YACGTR	2 cut(s)	396, 514
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	262
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstFNI	CGCG	5 cut(s)	242, 264, 378, 408, 425
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	4 cut(s)	244, 378, 392, 410
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	2 cut(s)	262, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 422
BstNI	CCWGG	2 cut(s)	131, 566
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	3 cut(s)	129, 385, 564
BstUI	CGCG	5 cut(s)	242, 264, 378, 408, 425
BstV2I	GAAGAC	3 cut(s)	18, 281, 532
BstZI	CGGCCG	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	196
CciNI	GCGGCCGC	1 cut(s)	505
CfoI	GCGC	4 cut(s)	244, 378, 392, 410
Cfr10I	RCCGGY	2 cut(s)	194, 244
Cfr13I	GGNCC	1 cut(s)	366
Cfr42I	CCGCGG	1 cut(s)	265
CsiI	ACCWGGT	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	334, 397, 404
CviAII	CATG	3 cut(s)	11, 168, 306
CviJI	RGCY	6 cut(s)	157, 186, 194, 252, 507, 569
CviKI_1	RGCY	6 cut(s)	157, 186, 194, 252, 507, 569
CviQI	GTAC	3 cut(s)	334, 397, 404
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	505
EagI	CGGCCG	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
EclXI	CGGCCG	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	526
Eco72I	CACGTG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	129, 564
EcoT14I	CCWWGG	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	14, 171, 309
FaiI	YATR	8 cut(s)	12, 66, 137, 169, 235, 307, 447, 610
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	3 cut(s)	10, 167, 305
FauI	CCCGC	2 cut(s)	257, 421
FblI	GTMKAC	2 cut(s)	258, 282
Fnu4HI	GCNGC	3 cut(s)	426, 505, 508
Fsp4HI	GCNGC	3 cut(s)	426, 505, 508
GlaI	GCGC	4 cut(s)	243, 377, 391, 409
GluI	GCNGC	3 cut(s)	426, 505, 508
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	3 cut(s)	195, 245, 386
HhaI	GCGC	4 cut(s)	244, 378, 392, 410
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	14, 171, 309
Hin6I	GCGC	4 cut(s)	242, 376, 390, 408
HinP1I	GCGC	4 cut(s)	242, 376, 390, 408
HincII	GTYRAC	2 cut(s)	259, 283
HindII	GTYRAC	2 cut(s)	259, 283
HinfI	GANTC	4 cut(s)	16, 203, 353, 498
HpaII	CCGG	3 cut(s)	195, 245, 386
HphI	GGTGA	2 cut(s)	151, 259
Hpy166II	GTNNAC	4 cut(s)	259, 283, 336, 366
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	3 cut(s)	214, 316, 434
Hpy8I	GTNNAC	4 cut(s)	259, 283, 336, 366
Hpy99I	CGWCG	4 cut(s)	284, 326, 362, 383
HpyAV	CCTTC	2 cut(s)	220, 588
HpyCH4III	ACNGT	2 cut(s)	163, 280
HpyCH4IV	ACGT	3 cut(s)	381, 395, 513
HpyCH4V	TGCA	2 cut(s)	530, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 422
HpySE526I	ACGT	3 cut(s)	381, 395, 513
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	14, 171, 309
HspAI	GCGC	4 cut(s)	242, 376, 390, 408
KasI	GGCGCC	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	318
LweI	GCATC	2 cut(s)	14, 539
MabI	ACCWGGT	1 cut(s)	129
MaeII	ACGT	3 cut(s)	381, 395, 513
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	6 cut(s)	18, 26, 75, 286, 532, 601
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	197, 347
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	86, 264, 299, 430, 487
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	1 cut(s)	176
MspA1I	CMGCKG	2 cut(s)	264, 504
MspI	CCGG	3 cut(s)	195, 245, 386
MspR9I	CCNGG	3 cut(s)	131, 387, 566
MvaI	CCWGG	2 cut(s)	131, 566
MvnI	CGCG	5 cut(s)	242, 264, 378, 408, 425
MwoI	GCNNNNNNNGC	2 cut(s)	382, 422
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	14, 171, 309
NlaIV	GGNNCC	2 cut(s)	199, 391
NotI	GCGGCCGC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 378
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	16, 498
Pfl23II	CGTACG	1 cut(s)	403
PflFI	GACNNNGTC	2 cut(s)	356, 601
PkrI	GCNGC	3 cut(s)	427, 506, 509
PleI	GAGTC	2 cut(s)	197, 347
PluTI	GGCGCC	1 cut(s)	393
PmaCI	CACGTG	1 cut(s)	514
PmlI	CACGTG	1 cut(s)	514
PpsI	GAGTC	2 cut(s)	197, 347
Ppu21I	YACGTR	2 cut(s)	396, 514
Psp6I	CCWGG	2 cut(s)	129, 564
PspCI	CACGTG	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	129, 564
PspLI	CGTACG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	199, 391
PspPI	GGNCC	1 cut(s)	366
PsyI	GACNNNGTC	2 cut(s)	356, 601
RsaI	GTAC	3 cut(s)	335, 398, 405
RsaNI	GTAC	3 cut(s)	334, 397, 404
SacII	CCGCGG	1 cut(s)	265
SalI	GTCGAC	2 cut(s)	257, 281
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	3 cut(s)	426, 505, 508
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	2 cut(s)	197, 347
ScrFI	CCNGG	3 cut(s)	131, 387, 566
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	2 cut(s)	14, 539
SfoI	GGCGCC	1 cut(s)	391
Sfr303I	CCGCGG	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	7 cut(s)	262, 264, 425, 428, 474, 504, 508
SspDI	GGCGCC	1 cut(s)	389
StyD4I	CCNGG	3 cut(s)	129, 385, 564
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	163, 280
TaiI	ACGT	3 cut(s)	384, 398, 516
TaqI	TCGA	5 cut(s)	258, 282, 324, 360, 372
TauI	GCSGC	3 cut(s)	428, 507, 510
TfiI	GAWTC	2 cut(s)	16, 498
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	152, 156
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	550
Tth111I	GACNNNGTC	2 cut(s)	356, 601
VpaK11BI	GGWCC	1 cut(s)	366
XagI	CCTNNNNNAGG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 484
XmiI	GTMKAC	2 cut(s)	258, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.