Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

10044365 .. 10045119

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCATCGCGTAGTGAGATTGTCTTGGCTTCCCTTCTTCTTTTTCTTTCATGCTTAGCAGAAACCTCTGATGCAAATGGCGTCGTCCTCTTTTCCTCTCTGCCCAACACTTTAGAAATGATCGTGTCACCCCACAAACCAGAACAGGGTAGTTGGACTTTTGGTGGGACGTTAAAAGCTGGAGAAGACAAACTCAGCATCTCATGGCGTCTAAACCAGAGTTTCTCAACCGGAACCACCGACTCGGGGTACAAGACCATCAAGGTGAAGCTGTGCTACGCGCCGGTGAGTCAAGTGGACCGCGGGTGGAGGAAGACGGTGGACAACCTCGCAAAGGACAAGACGTGCCAGTTCAAGATCGAAACTAGACCATACAAACACGGCTCTAGCAAGTGGAAGTACATAGATTGGACCATAAAGCGCGACGTGCCTTCTGCTTCGTACTTCGTACGCGCCTACGCTTACGACGGTGCAGGTGTTGCGGTGGCTTACGGTCAAAGCACGGGACCGAAGAAAAACTACAACATATTTGAGGTCCAGGGGATCACCGGACGACACAAGACGCTTGATATGGTATCGATTTGCTTTAGTGCTTTCTCCGTTTTGTCCTTGGTTGGGTTCTTTGTTGTTGAGAAGACAAGGGCAAAGCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

218

Amino Acids

24.14

Weight (kDa)

9.44

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	31 - 184	9.6e-54	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	464
AccII	CGCG	5 cut(s)	10, 281, 303, 423, 453
AciI	CCGC	3 cut(s)	301, 303, 482
AclWI	GGATC	1 cut(s)	551
AcyI	GRCGYC	2 cut(s)	81, 208
AfaI	GTAC	4 cut(s)	251, 401, 443, 450
AfiI	CCNNNNNNNGG	4 cut(s)	146, 246, 334, 615
AgsI	TTSAA	1 cut(s)	355
AjiI	CACGTC	2 cut(s)	345, 427
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	179, 271
AluI	AGCT	2 cut(s)	179, 271
AlwI	GGATC	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	244
AspLEI	GCGC	3 cut(s)	283, 423, 455
AspS9I	GGNCC	4 cut(s)	298, 411, 506, 535
AsuHPI	GGTGA	4 cut(s)	120, 277, 298, 538
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	4 cut(s)	298, 411, 506, 535
BarI	GAAGNNNNNNTAC	4 cut(s)	260, 292, 503, 535
BbsI	GAAGAC	3 cut(s)	192, 320, 641
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	539
BfaI	CTAG	2 cut(s)	366, 387
BfuAI	ACCTGC	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	4 cut(s)	298, 411, 506, 535
BmeT110I	CYCGRG	1 cut(s)	244
BmgBI	CACGTC	2 cut(s)	345, 427
BmgT120I	GGNCC	4 cut(s)	298, 411, 506, 535
BmiI	GGNNCC	2 cut(s)	235, 507
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	3 cut(s)	14, 61, 207
BpiI	GAAGAC	3 cut(s)	192, 320, 641
BpmI	CTGGAG	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	578
BsaHI	GRCGYC	2 cut(s)	81, 208
BsaJI	CCNNGG	3 cut(s)	301, 538, 609
BsaWI	WCCGGW	2 cut(s)	230, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 246, 334, 615
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	539
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	301, 538, 609
BseLI	CCNNNNNNNGG	4 cut(s)	146, 246, 334, 615
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	5 cut(s)	10, 281, 303, 423, 453
BshVI	ATCGAT	1 cut(s)	578
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	231, 284, 549
BsiWI	CGTACG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	181, 519
BslI	CCNNNNNNNGG	4 cut(s)	146, 246, 334, 615
BsmFI	GGGAC	2 cut(s)	181, 519
BsoBI	CYCGRG	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	120, 357, 543
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	3 cut(s)	301, 303, 482
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	578
BspFNI	CGCG	5 cut(s)	10, 281, 303, 423, 453
BspLI	GGNNCC	2 cut(s)	235, 507
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	301, 538, 609
BssMI	GATC	3 cut(s)	120, 357, 543
BssNI	GRCGYC	2 cut(s)	81, 208
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	319, 470, 494
BstACI	GRCGYC	2 cut(s)	81, 208
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	55, 194
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstFNI	CGCG	5 cut(s)	10, 281, 303, 423, 453
BstHHI	GCGC	3 cut(s)	283, 423, 455
BstKTI	GATC	3 cut(s)	123, 360, 546
BstMBI	GATC	3 cut(s)	120, 357, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 479
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	5 cut(s)	10, 281, 303, 423, 453
BstV2I	GAAGAC	3 cut(s)	192, 320, 641
Bsu15I	ATCGAT	1 cut(s)	578
BsuTUI	ATCGAT	1 cut(s)	578
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	2 cut(s)	345, 427
BveI	ACCTGC	1 cut(s)	464
CfoI	GCGC	3 cut(s)	283, 423, 455
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	4 cut(s)	298, 411, 506, 535
Cfr42I	CCGCGG	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	578
CseI	GACGC	3 cut(s)	70, 197, 571
Csp6I	GTAC	4 cut(s)	250, 400, 442, 449
CviAII	CATG	2 cut(s)	51, 204
CviJI	RGCY	6 cut(s)	29, 179, 271, 384, 488, 649
CviKI_1	RGCY	6 cut(s)	29, 179, 271, 384, 488, 649
CviQI	GTAC	4 cut(s)	250, 400, 442, 449
DdeI	CTNAG	2 cut(s)	55, 194
DpnI	GATC	3 cut(s)	122, 359, 545
DpnII	GATC	3 cut(s)	120, 357, 543
Eco130I	CCWWGG	1 cut(s)	609
Eco47I	GGWCC	4 cut(s)	298, 411, 506, 535
Eco88I	CYCGRG	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	2 cut(s)	54, 207
FaiI	YATR	7 cut(s)	52, 205, 373, 404, 416, 527, 572
FaqI	GGGAC	2 cut(s)	181, 519
FatI	CATG	2 cut(s)	50, 203
FauI	CCCGC	1 cut(s)	296
FspBI	CTAG	2 cut(s)	366, 387
GlaI	GCGC	3 cut(s)	282, 422, 454
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	3 cut(s)	231, 284, 549
HgaI	GACGC	3 cut(s)	70, 197, 571
HhaI	GCGC	3 cut(s)	283, 423, 455
Hin1I	GRCGYC	2 cut(s)	81, 208
Hin1II	CATG	2 cut(s)	54, 207
Hin6I	GCGC	3 cut(s)	281, 421, 453
HinP1I	GCGC	3 cut(s)	281, 421, 453
HinfI	GANTC	2 cut(s)	242, 289
HpaII	CCGG	3 cut(s)	231, 284, 549
HphI	GGTGA	4 cut(s)	120, 277, 298, 538
Hpy166II	GTNNAC	2 cut(s)	298, 322
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	298, 322
Hpy99I	CGWCG	3 cut(s)	86, 428, 470
HpyAV	CCTTC	2 cut(s)	44, 441
HpyCH4III	ACNGT	3 cut(s)	319, 470, 494
HpyCH4IV	ACGT	3 cut(s)	170, 344, 426
HpyCH4V	TGCA	2 cut(s)	74, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 479
HpyF3I	CTNAG	2 cut(s)	55, 194
HpySE526I	ACGT	3 cut(s)	170, 344, 426
Hsp92I	GRCGYC	2 cut(s)	81, 208
Hsp92II	CATG	2 cut(s)	54, 207
HspAI	GCGC	3 cut(s)	281, 421, 453
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	120, 357, 543
LweI	GCATC	3 cut(s)	14, 61, 207
MaeI	CTAG	2 cut(s)	366, 387
MaeII	ACGT	3 cut(s)	170, 344, 426
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	122, 359, 545
MboI	GATC	3 cut(s)	120, 357, 543
MboII	GAAGA	5 cut(s)	29, 197, 325, 523, 646
MlyI	GAGTC	2 cut(s)	236, 298
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	76, 98, 106, 303, 338, 526
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	3 cut(s)	231, 284, 549
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	5 cut(s)	10, 281, 303, 423, 453
MwoI	GCNNNNNNNGC	2 cut(s)	427, 479
NdeII	GATC	3 cut(s)	120, 357, 543
NlaIII	CATG	2 cut(s)	54, 207
NlaIV	GGNNCC	2 cut(s)	235, 507
NmuCI	GTSAC	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	464
Pfl23II	CGTACG	1 cut(s)	448
PleI	GAGTC	2 cut(s)	236, 297
PpsI	GAGTC	2 cut(s)	236, 297
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspLI	CGTACG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	235, 507
PspPI	GGNCC	4 cut(s)	298, 411, 506, 535
RsaI	GTAC	4 cut(s)	251, 401, 443, 450
RsaNI	GTAC	4 cut(s)	250, 400, 442, 449
RseI	CAYNNNNRTG	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	120, 357, 543
Sau96I	GGNCC	4 cut(s)	298, 411, 506, 535
SchI	GAGTC	2 cut(s)	236, 298
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	3 cut(s)	14, 61, 207
Sfr303I	CCGCGG	1 cut(s)	304
SgrAI	CRCCGGYG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	304
SinI	GGWCC	4 cut(s)	298, 411, 506, 535
SmiMI	CAYNNNNRTG	1 cut(s)	263
SsiI	CCGC	3 cut(s)	301, 303, 482
SspMI	CTAG	2 cut(s)	366, 387
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	319, 470, 494
TaiI	ACGT	3 cut(s)	173, 347, 429
TaqI	TCGA	2 cut(s)	360, 578
TaqII	GACCGA	1 cut(s)	523
TatI	WGTACW	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	589
VpaK11BI	GGWCC	4 cut(s)	298, 411, 506, 535
XagI	CCTNNNNNAGG	1 cut(s)	332
XspI	CTAG	2 cut(s)	366, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.