Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

174621 .. 178694

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCACTTTCCTCTCCCGCGTCAGCTCCACCTCCACCTCCTCCTCCTCCACTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCAGCACCCTTTTATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTATTGTATCTCATAGAAATCCCAAATACATTACTTGGAGGAATGAATCCCAAACTAAGGAGGAGGGCTTGCAATTCCGAATTCAGCAACTCACCGGGGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTCATCAACTCAAGCATGAATTTGGGGCCACTGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTATTAGTTGCCACAACATATCAGGAGGCATGTGTATTTGAGATAAAGGTTGGTGGTGATGCTGTTTTCAAGGACTCGTGCCCCAAGTGGGAAATGCTAGAGGACCACACACCATTTTTTCCAGCATTCTCTTCTCTCAACTTGTTCTCTTTGGATGTGAAAAACACGGAGACACCTAAACTAGGGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACTGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCAGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

428

Amino Acids

47.33

Weight (kDa)

9.01

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1308	PF07000	260 - 426	9.1e-30	Protein of unknown function (DUF1308)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	191
AccBSI	CCGCTC	2 cut(s)	444, 1220
AccII	CGCG	2 cut(s)	132, 243
AciI	CCGC	6 cut(s)	30, 130, 435, 438, 442, 1220
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	414, 530, 924
AfaI	GTAC	3 cut(s)	790, 835, 1165
AfiI	CCNNNNNNNGG	6 cut(s)	100, 193, 391, 567, 664, 758
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	283, 646, 947, 1009, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	138, 1055, 1199
AluI	AGCT	3 cut(s)	138, 1055, 1199
Alw21I	GWGCWC	2 cut(s)	1186, 1260
Alw26I	GTCTC	2 cut(s)	270, 740
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	4 cut(s)	184, 432, 537, 1034
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	3 cut(s)	414, 530, 924
AseI	ATTAAT	1 cut(s)	573
Asp700I	GAANNNNTTC	1 cut(s)	993
AspS9I	GGNCC	4 cut(s)	432, 537, 679, 1034
AsuC2I	CCSGG	2 cut(s)	232, 430
AsuHPI	GGTGA	8 cut(s)	220, 418, 575, 644, 776, 925, 1052, 1181
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	659
BaeI	ACNNNNGTAYC	2 cut(s)	1055, 1088
BauI	CACGAG	1 cut(s)	652
Bbv12I	GWGCWC	2 cut(s)	1186, 1260
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	2 cut(s)	512, 780
BcnI	CCSGG	2 cut(s)	232, 430
BcoDI	GTCTC	2 cut(s)	270, 740
BfaI	CTAG	3 cut(s)	674, 758, 1056
BisI	GCNGC	3 cut(s)	435, 438, 875
BlsI	GCNGC	3 cut(s)	436, 439, 876
Bme1390I	CCNGG	2 cut(s)	232, 430
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	4 cut(s)	432, 537, 679, 1034
BmiI	GGNNCC	3 cut(s)	323, 433, 538
BmrFI	CCNGG	2 cut(s)	232, 430
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	4, 17, 625
BmuI	ACTGGG	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	197, 840
BpuEI	CTTGAG	2 cut(s)	80, 506
BpuMI	CCSGG	2 cut(s)	232, 430
BsaJI	CCNNGG	3 cut(s)	231, 429, 1265
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 193, 391, 567, 664, 758
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	4 cut(s)	326, 1140, 1171, 1282
BseDI	CCNNGG	3 cut(s)	231, 429, 1265
BseGI	GGATG	3 cut(s)	504, 736, 1242
BseLI	CCNNNNNNNGG	6 cut(s)	100, 193, 391, 567, 664, 758
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	4 cut(s)	326, 1140, 1171, 1282
BseRI	GAGGAG	5 cut(s)	83, 142, 145, 148, 410
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	886
Bsh1236I	CGCG	2 cut(s)	132, 243
BshFI	GGCC	4 cut(s)	186, 434, 539, 1036
BsiHKAI	GWGCWC	2 cut(s)	1186, 1260
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	231, 429, 561
BslFI	GGGAC	1 cut(s)	1080
BslI	CCNNNNNNNGG	6 cut(s)	100, 193, 391, 567, 664, 758
BsmAI	GTCTC	2 cut(s)	270, 740
BsmFI	GGGAC	1 cut(s)	1080
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	4 cut(s)	186, 434, 539, 1036
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	659, 1186, 1260
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	6 cut(s)	30, 130, 435, 438, 442, 1220
BspANI	GGCC	4 cut(s)	186, 434, 539, 1036
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	132, 243
BspLI	GGNNCC	3 cut(s)	323, 433, 538
BsrBI	CCGCTC	2 cut(s)	444, 1220
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	4 cut(s)	326, 1140, 1171, 1282
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	231, 429, 1265
BssMI	GATC	1 cut(s)	544
BssSI	CACGAG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	1081, 1192
Bst6I	CTCTTC	2 cut(s)	17, 712
BstC8I	GCNNGC	5 cut(s)	106, 251, 404, 442, 1182
BstDEI	CTNAG	4 cut(s)	170, 390, 497, 950
BstDSI	CCRYGG	1 cut(s)	1265
BstENI	CCTNNNNNAGG	1 cut(s)	756
BstF5I	GGATG	3 cut(s)	504, 736, 1242
BstFNI	CGCG	2 cut(s)	132, 243
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	2 cut(s)	270, 740
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 803, 1113, 1205
BstNSI	RCATGY	2 cut(s)	290, 609
BstSCI	CCNGG	2 cut(s)	230, 428
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	2 cut(s)	132, 243
BstV1I	GCAGC	1 cut(s)	886
BsuRI	GGCC	4 cut(s)	186, 434, 539, 1036
BtgI	CCRYGG	1 cut(s)	1265
BtsCI	GGATG	3 cut(s)	504, 736, 1242
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 178, 540
Cac8I	GCNNGC	5 cut(s)	106, 251, 404, 442, 1182
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	4 cut(s)	432, 537, 679, 1034
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	789, 834, 1164
CviAII	CATG	7 cut(s)	287, 293, 491, 527, 550, 606, 1108
CviQI	GTAC	3 cut(s)	789, 834, 1164
DdeI	CTNAG	4 cut(s)	170, 390, 497, 950
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	17, 712
EarI	CTCTTC	2 cut(s)	17, 712
Eco47I	GGWCC	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	756
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRI	GAATTC	1 cut(s)	414
FaeI	CATG	7 cut(s)	290, 296, 494, 530, 553, 609, 1111
FaqI	GGGAC	1 cut(s)	1080
FatI	CATG	7 cut(s)	286, 292, 490, 526, 549, 605, 1107
FauI	CCCGC	2 cut(s)	137, 449
Fnu4HI	GCNGC	3 cut(s)	435, 438, 875
FokI	GGATG	3 cut(s)	491, 743, 1249
Fsp4HI	GCNGC	3 cut(s)	435, 438, 875
FspBI	CTAG	3 cut(s)	674, 758, 1056
GluI	GCNGC	3 cut(s)	435, 438, 875
GsuI	CTGGAG	2 cut(s)	197, 840
HaeIII	GGCC	4 cut(s)	186, 434, 539, 1036
HapII	CCGG	3 cut(s)	231, 429, 561
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	7 cut(s)	290, 296, 494, 530, 553, 609, 1111
HinfI	GANTC	3 cut(s)	380, 650, 931
HpaII	CCGG	3 cut(s)	231, 429, 561
HphI	GGTGA	8 cut(s)	220, 418, 575, 644, 776, 925, 1052, 1181
Hpy166II	GTNNAC	3 cut(s)	205, 781, 1248
Hpy188I	TCNGA	6 cut(s)	112, 413, 922, 930, 1003, 1122
Hpy188III	TCNNGA	5 cut(s)	331, 599, 857, 966, 1088
Hpy8I	GTNNAC	3 cut(s)	205, 781, 1248
HpyAV	CCTTC	2 cut(s)	474, 1127
HpyCH4III	ACNGT	2 cut(s)	1081, 1192
HpyCH4V	TGCA	4 cut(s)	81, 249, 309, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 803, 1113, 1205
HpyF3I	CTNAG	4 cut(s)	170, 390, 497, 950
Hsp92II	CATG	7 cut(s)	290, 296, 494, 530, 553, 609, 1111
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	143, 1189
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	3 cut(s)	4, 17, 625
MaeI	CTAG	3 cut(s)	674, 758, 1056
MaeIII	GTNAC	3 cut(s)	764, 1058, 1192
MalI	GATC	1 cut(s)	546
MbiI	CCGCTC	2 cut(s)	444, 1220
MboI	GATC	1 cut(s)	544
MboII	GAAGA	4 cut(s)	31, 34, 699, 1156
MhlI	GDGCHC	3 cut(s)	659, 1186, 1260
MluCI	AATT	8 cut(s)	5, 407, 414, 530, 866, 924, 936, 1013
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	1145, 1211
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	3 cut(s)	573, 882, 1274
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	3 cut(s)	231, 429, 561
MspR9I	CCNGG	2 cut(s)	232, 430
Mva1269I	GAATGC	1 cut(s)	701
MvnI	CGCG	2 cut(s)	132, 243
MwoI	GCNNNNNNNGC	4 cut(s)	446, 803, 1113, 1205
NciI	CCSGG	2 cut(s)	232, 430
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	7 cut(s)	290, 296, 494, 530, 553, 609, 1111
NlaIV	GGNNCC	3 cut(s)	323, 433, 538
NmuCI	GTSAC	2 cut(s)	764, 1058
NspI	RCATGY	2 cut(s)	290, 609
PaeR7I	CTCGAG	1 cut(s)	191
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	2 cut(s)	380, 931
PkrI	GCNGC	3 cut(s)	436, 439, 876
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PscI	ACATGT	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	323, 433, 538
PspPI	GGNCC	4 cut(s)	432, 537, 679, 1034
PspXI	VCTCGAGB	1 cut(s)	191
RsaI	GTAC	3 cut(s)	790, 835, 1165
RsaNI	GTAC	3 cut(s)	789, 834, 1164
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	573, 882, 1274
SatI	GCNGC	3 cut(s)	435, 438, 875
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	4 cut(s)	432, 537, 679, 1034
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	232, 430
SduI	GDGCHC	3 cut(s)	659, 1186, 1260
SfaNI	GCATC	3 cut(s)	4, 17, 625
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	679
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	95, 191, 521
SmoI	CTYRAG	3 cut(s)	95, 191, 521
Sse9I	AATT	8 cut(s)	5, 407, 414, 530, 866, 924, 936, 1013
SsiI	CCGC	6 cut(s)	30, 130, 435, 438, 442, 1220
SspMI	CTAG	3 cut(s)	674, 758, 1056
StyD4I	CCNGG	2 cut(s)	230, 428
TaaI	ACNGT	2 cut(s)	1081, 1192
TaqI	TCGA	2 cut(s)	192, 1129
TasI	AATT	8 cut(s)	5, 407, 414, 530, 866, 924, 936, 1013
TauI	GCSGC	2 cut(s)	437, 440
TfiI	GAWTC	2 cut(s)	380, 931
Tru1I	TTAA	3 cut(s)	573, 882, 1274
Tru9I	TTAA	3 cut(s)	573, 882, 1274
TscAI	CASTG	3 cut(s)	76, 178, 547
TseFI	GTSAC	2 cut(s)	764, 1058
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	2 cut(s)	764, 1058
TspDTI	ATGAA	3 cut(s)	393, 543, 986
TspGWI	ACGGA	1 cut(s)	758
TspRI	CASTG	3 cut(s)	76, 178, 547
VpaK11BI	GGWCC	1 cut(s)	679
VspI	ATTAAT	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	756
XapI	RAATTY	3 cut(s)	414, 530, 924
XceI	RCATGY	2 cut(s)	290, 609
XcmI	CCANNNNNNNNNTGG	2 cut(s)	547, 1132
XhoI	CTCGAG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	3 cut(s)	674, 758, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.