Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Reverse (-)

921876 .. 944641

Gene Structure 22766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGACCGGAAGTACCGAATAAAGTCACCGAACCCAACCTTACCTAGAAATCCAAACGAAGGTAAGAAAACCATAATTTCATCCTTCAACTTACACAGACACAATACAACCTCGAGAAAATCGACAAGCATCTTACCGATTCCTTGGCAAGCTAGAGTTTCTCACCGAAACCACCGACTTGGCGTACAAGACCGTCAAGGTGAAGCCGTGCTAGGCGCTATTGAGTCAAGTGGACCGCAGTGGAGGAAGACGGTGGACAACCTCACTAAGGACAAGACATGCCGGTTCAAGATCGAAACTAGATTGGAATTGAAATTGAAGAAAAGACGGCGCAGTGTTGCGATGGCTTCGGAAGGAGCAGGTGTTGCCATGGCTTACTATCGAAGCACCGGACCGAAGAAAGACTACAACATATTTGAGGTCCGGGGATCACCGTACGACACAAGACGCTTGGCCGTGACCGGATTATGCAGAGAACTTCACCGATTTAATCGCGCTATTGGGAAGACGAGATATAGGCTCGCTACTATGCTTGCTTCGTCTCAAAATTTGCAAAATTGCAAACGCTCTATTTTGTCTTGGGCCACTAAAAGTATCGAAACAGAGTTGTTTGATGAATCCTTAATAAATGGCTTGTGTAAGGAAGGTAGGTTGGATGATGCAAATGGGTTGTTTGATGAATCCAATAGAGAGAATATGTGGATGGTTGGAATTGCAAAGGATAGAGATTGGGAGGGGGGAAGAGAGATGGGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

253

Amino Acids

29.02

Weight (kDa)

10.04

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	208 - 228	1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	3 cut(s)	17, 189, 440
AfiI	CCNNNNNNNGG	2 cut(s)	62, 271
AgsI	TTSAA	4 cut(s)	91, 292, 316, 322
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	456, 585
ApoI	RAATTY	1 cut(s)	550
AspLEI	GCGC	3 cut(s)	221, 336, 500
AspS9I	GGNCC	4 cut(s)	236, 395, 424, 585
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	5 cut(s)	21, 158, 215, 426, 476
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	3 cut(s)	236, 395, 424
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	3 cut(s)	12, 257, 515
BccI	CCATC	3 cut(s)	340, 700, 745
BceAI	ACGGC	3 cut(s)	194, 347, 443
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	4 cut(s)	48, 156, 215, 303
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	3 cut(s)	236, 395, 424
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	236, 395, 424, 585
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	141, 652
BpiI	GAAGAC	3 cut(s)	12, 257, 515
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	146, 372, 427
BsaWI	WCCGGW	3 cut(s)	9, 392, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 271
Bse118I	RCCGGY	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	146, 372, 427
BseGI	GGATG	3 cut(s)	83, 664, 711
BseLI	CCNNNNNNNGG	2 cut(s)	62, 271
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	458, 587
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	5 cut(s)	10, 286, 393, 427, 465
BsiWI	CGTACG	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	62, 271
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	458, 587
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	294, 431
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	458, 587
BspFNI	CGCG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	146, 372, 427
BssMI	GATC	2 cut(s)	294, 431
BssT1I	CCWWGG	2 cut(s)	146, 372
Bst4CI	ACNGT	3 cut(s)	197, 256, 438
Bst6I	CTCTTC	1 cut(s)	739
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	153, 525, 537
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	83, 664, 711
BstFNI	CGCG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	3 cut(s)	221, 336, 500
BstKTI	GATC	2 cut(s)	297, 434
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	294, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	498
BstV2I	GAAGAC	3 cut(s)	12, 257, 515
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	458, 587
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	83, 664, 711
BtsI	GCAGTG	2 cut(s)	248, 343
BtsIMutI	CAGTG	2 cut(s)	248, 343
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	153, 525, 537
CfoI	GCGC	3 cut(s)	221, 336, 500
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	236, 395, 424, 585
CpoI	CGGWCCG	1 cut(s)	395
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	16, 188, 439
CspI	CGGWCCG	1 cut(s)	395
CviAII	CATG	2 cut(s)	282, 373
CviJI	RGCY	8 cut(s)	155, 209, 350, 377, 458, 523, 587, 636
CviKI_1	RGCY	8 cut(s)	155, 209, 350, 377, 458, 523, 587, 636
CviQI	GTAC	3 cut(s)	16, 188, 439
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	296, 433
DpnII	GATC	2 cut(s)	294, 431
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Eco130I	CCWWGG	2 cut(s)	146, 372
Eco47I	GGWCC	3 cut(s)	236, 395, 424
Eco88I	CYCGRG	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	146, 372
ErhI	CCWWGG	2 cut(s)	146, 372
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	2 cut(s)	285, 376
FaiI	YATR	8 cut(s)	77, 283, 374, 416, 472, 519, 533, 701
FatI	CATG	2 cut(s)	281, 372
FokI	GGATG	3 cut(s)	70, 671, 718
FspBI	CTAG	4 cut(s)	48, 156, 215, 303
GlaI	GCGC	3 cut(s)	220, 335, 499
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	458, 587
HapII	CCGG	5 cut(s)	10, 286, 393, 427, 465
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	3 cut(s)	221, 336, 500
Hin1II	CATG	2 cut(s)	285, 376
Hin6I	GCGC	3 cut(s)	219, 334, 498
HinP1I	GCGC	3 cut(s)	219, 334, 498
HinfI	GANTC	4 cut(s)	142, 227, 620, 683
HpaII	CCGG	5 cut(s)	10, 286, 393, 427, 465
HphI	GGTGA	5 cut(s)	21, 158, 215, 426, 476
Hpy166II	GTNNAC	2 cut(s)	236, 259
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	117, 292
Hpy8I	GTNNAC	2 cut(s)	236, 259
HpyAV	CCTTC	4 cut(s)	56, 97, 350, 641
HpyCH4III	ACNGT	3 cut(s)	197, 256, 438
HpyCH4V	TGCA	5 cut(s)	474, 556, 564, 665, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	285, 376
HspAI	GCGC	3 cut(s)	219, 334, 498
Kzo9I	GATC	2 cut(s)	294, 431
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	6 cut(s)	23, 299, 348, 406, 440, 478
LweI	GCATC	2 cut(s)	141, 652
MaeI	CTAG	4 cut(s)	48, 156, 215, 303
MaeIII	GTNAC	2 cut(s)	27, 460
MalI	GATC	2 cut(s)	296, 433
MboI	GATC	2 cut(s)	294, 431
MboII	GAAGA	6 cut(s)	17, 262, 334, 412, 520, 756
MluCI	AATT	6 cut(s)	78, 311, 317, 550, 559, 714
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	636, 691
MnlI	CCTC	5 cut(s)	124, 240, 275, 415, 730
MseI	TTAA	2 cut(s)	492, 626
MspI	CCGG	5 cut(s)	10, 286, 393, 427, 465
MspR9I	CCNGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	294, 431
NlaIII	CATG	2 cut(s)	285, 376
NmuCI	GTSAC	2 cut(s)	27, 460
NspI	RCATGY	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	142, 620, 683
Pfl23II	CGTACG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspLI	CGTACG	1 cut(s)	438
PspPI	GGNCC	4 cut(s)	236, 395, 424, 585
RsaI	GTAC	3 cut(s)	17, 189, 440
RsaNI	GTAC	3 cut(s)	16, 188, 439
Rsr2I	CGGWCCG	1 cut(s)	395
RsrII	CGGWCCG	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	492, 626
Sau3AI	GATC	2 cut(s)	294, 431
Sau96I	GGNCC	4 cut(s)	236, 395, 424, 585
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	141, 652
Sfr274I	CTCGAG	1 cut(s)	115
SinI	GGWCC	3 cut(s)	236, 395, 424
SlaI	CTCGAG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	6 cut(s)	78, 311, 317, 550, 559, 714
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	4 cut(s)	48, 156, 215, 303
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	146, 372
TaaI	ACNGT	3 cut(s)	197, 256, 438
TaqI	TCGA	5 cut(s)	116, 125, 297, 385, 600
TaqII	GACCGA	1 cut(s)	412
TasI	AATT	6 cut(s)	78, 311, 317, 550, 559, 714
TfiI	GAWTC	3 cut(s)	142, 620, 683
Tru1I	TTAA	2 cut(s)	492, 626
Tru9I	TTAA	2 cut(s)	492, 626
TscAI	CASTG	2 cut(s)	248, 343
TseFI	GTSAC	2 cut(s)	27, 460
Tsp45I	GTSAC	2 cut(s)	27, 460
TspDTI	ATGAA	3 cut(s)	72, 633, 696
TspRI	CASTG	2 cut(s)	248, 343
VpaK11BI	GGWCC	3 cut(s)	236, 395, 424
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	115
XspI	CTAG	4 cut(s)	48, 156, 215, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.