Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004983

Physical Location & Seq

Genomic Coordinates Forward (+)

56979841 .. 56981291

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTCACGTGCTGGGATTCTATTGGCTTCTGTGCTTCTCCTCTCTTGCTTAGCAGAAACCTCCTATGGCGTTCTCTTCTCCACTCTGAAACAATCTCTTATTGTAACTGCTTCACACGTTGAGGCAAATGGAACACTCCTGAAAGCTGGGGAAGACAAAATATCTGTTACATGGGGTTTGAACCAGAGCCTCCCAGCTGGGACTGACTCGGCCTACAAGACCGTCACCGTGAAGCTCTGCTACGCGCCGGTGAGCCAAGTCGACCGCGCGTGGAGGAAGACAGTGGACAACCTCTTCAAGGACAAGACCTGTCAGCACAAGATCGTCGCCCGGCCGTACAACGCCTCCATGCAGACCTTCGAGTGGACAGTCGAGCGTGACGTGCCCACCGCCACGTACTTCGTACGCGCCTACGCCTACGACGCCGCCGAGGTGGCGGTGGCTTACGGTCAAAACACGGGACCTAAGAAGGACACCAACTTGTTTGAGGTGCAGTCTATCACCGGGCGCCACGTGACGCTTGATATTGTTTCCGTCTGCTTCAGCGCTTTCTCGGTTTTAGCCCTGGCTGGGTTCTTCATTGCTGAGAAGACGAGGGCAAAGTCGTCCAAAAGAAGTGTTGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

210

Amino Acids

22.85

Weight (kDa)

9.14

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	27 - 170	3.4e-62	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24715 AT5G50200 AT5G50200 AT5G50200
fragaria_vesca	FvH4_5g06392 FvH4_5g06400
malus_domestica	MD06G1164900.v1.1 MD14G1170300.v1.1
prunus_persica	Prupe.5G164500_v2.0.a1
pyrus_communis	pycom06g14750 pycom14g14220
rosa_chinensis	RchiOBHm_Chr7g0192401
rosa_laevigata	RLG00000004371 RLG00000004372
rosa_multiflora	Rmu_sc0003108.1_g000019
rosa_roxburghii	Rroxscaffold_3G00263040 Rroxscaffold_3G00263050 Rroxscaffold_6G00388180
rosa_rugosa	Rorug07G0001300 Rorug07G0001400
rosa_samantha	Rh7AG125000 Rh7AG125100 Rh7BG127200 Rh7BG127400 Rh7CG129000 Rh7CG129100 Rh7DG129100 Rh7DG129200
rosa_wichuraiana	Rw7G010760 Rw7G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	4 cut(s)	248, 270, 272, 411
AciI	CCGC	4 cut(s)	268, 393, 429, 440
AcoI	YGGCCR	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	529
AcvI	CACGTG	2 cut(s)	11, 517
AcyI	GRCGYC	2 cut(s)	426, 511
AfaI	GTAC	3 cut(s)	341, 401, 408
AfeI	AGCGCT	1 cut(s)	550
AfiI	CCNNNNNNNGG	3 cut(s)	301, 366, 573
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	184, 301
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	3 cut(s)	149, 200, 238
AluI	AGCT	3 cut(s)	149, 200, 238
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	2 cut(s)	213, 335
AspLEI	GCGC	5 cut(s)	250, 272, 413, 513, 551
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	334, 508
AsuHPI	GGTGA	3 cut(s)	220, 265, 496
AvaII	GGWCC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbrPI	CACGTG	2 cut(s)	11, 517
BbsI	GAAGAC	3 cut(s)	162, 287, 599
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	2 cut(s)	334, 508
BfaI	CTAG	1 cut(s)	631
BfoI	RGCGCY	2 cut(s)	514, 552
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	429
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	334, 508, 569
Bme18I	GGWCC	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	465, 512
BmrFI	CCNGG	3 cut(s)	334, 508, 569
BpiI	GAAGAC	3 cut(s)	162, 287, 599
Bpu1102I	GCTNAGC	1 cut(s)	52
BpuMI	CCSGG	2 cut(s)	334, 508
BsaAI	YACGTR	3 cut(s)	11, 399, 517
BsaHI	GRCGYC	2 cut(s)	426, 511
BsaJI	CCNNGG	2 cut(s)	432, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 366, 573
Bse118I	RCCGGY	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	432, 567
BseLI	CCNNNNNNNGG	3 cut(s)	301, 366, 573
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	390
BseX3I	CGGCCG	1 cut(s)	335
BseYI	CCCAGC	5 cut(s)	14, 149, 196, 200, 572
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	4 cut(s)	248, 270, 272, 411
Bsh1285I	CGRYCG	2 cut(s)	268, 338
BshFI	GGCC	2 cut(s)	215, 337
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	2 cut(s)	268, 338
BsiSI	CCGG	3 cut(s)	251, 334, 507
BsiWI	CGTACG	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	217, 477
BslI	CCNNNNNNNGG	3 cut(s)	301, 366, 573
BsmFI	GGGAC	2 cut(s)	217, 477
BsnI	GGCC	2 cut(s)	215, 337
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	324
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	4 cut(s)	268, 393, 429, 440
BspANI	GGCC	2 cut(s)	215, 337
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	4 cut(s)	248, 270, 272, 411
BspLI	GGNNCC	2 cut(s)	465, 512
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	432, 567
BssMI	GATC	1 cut(s)	324
BssNI	GRCGYC	2 cut(s)	426, 511
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	5 cut(s)	226, 232, 286, 373, 452
Bst6I	CTCTTC	2 cut(s)	83, 302
BstACI	GRCGYC	2 cut(s)	426, 511
BstBAI	YACGTR	3 cut(s)	11, 399, 517
BstDEI	CTNAG	3 cut(s)	52, 468, 588
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstFNI	CGCG	4 cut(s)	248, 270, 272, 411
BstH2I	RGCGCY	2 cut(s)	514, 552
BstHHI	GCGC	5 cut(s)	250, 272, 413, 513, 551
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMCI	CGRYCG	2 cut(s)	268, 338
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 385, 425, 437
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	3 cut(s)	332, 506, 567
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	4 cut(s)	248, 270, 272, 411
BstV2I	GAAGAC	3 cut(s)	162, 287, 599
BstZI	CGGCCG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	215, 337
BtrI	CACGTC	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	291
CfoI	GCGC	5 cut(s)	250, 272, 413, 513, 551
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	2 cut(s)	434, 529
Csp6I	GTAC	3 cut(s)	340, 400, 407
CviAII	CATG	2 cut(s)	174, 352
CviQI	GTAC	3 cut(s)	340, 400, 407
DdeI	CTNAG	3 cut(s)	52, 468, 588
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	335
EagI	CGGCCG	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	83, 302
EarI	CTCTTC	2 cut(s)	83, 302
EclXI	CGGCCG	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	464
Eco47III	AGCGCT	1 cut(s)	550
Eco52I	CGGCCG	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	529
Eco72I	CACGTG	2 cut(s)	11, 517
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
FaeI	CATG	2 cut(s)	177, 355
FaiI	YATR	3 cut(s)	69, 175, 353
FaqI	GGGAC	2 cut(s)	217, 477
FatI	CATG	2 cut(s)	173, 351
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	631
GlaI	GCGC	5 cut(s)	249, 271, 412, 512, 550
GluI	GCNGC	1 cut(s)	429
GsaI	CCCAGC	5 cut(s)	18, 153, 200, 204, 576
HaeII	RGCGCY	2 cut(s)	514, 552
HaeIII	GGCC	2 cut(s)	215, 337
HapII	CCGG	3 cut(s)	251, 334, 507
HgaI	GACGC	2 cut(s)	434, 529
HhaI	GCGC	5 cut(s)	250, 272, 413, 513, 551
Hin1I	GRCGYC	2 cut(s)	426, 511
Hin1II	CATG	2 cut(s)	177, 355
Hin6I	GCGC	5 cut(s)	248, 270, 411, 511, 549
HinP1I	GCGC	5 cut(s)	248, 270, 411, 511, 549
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	19, 209
HpaII	CCGG	3 cut(s)	251, 334, 507
HphI	GGTGA	3 cut(s)	220, 265, 496
Hpy166II	GTNNAC	3 cut(s)	265, 289, 369
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	265, 289, 369
Hpy99I	CGWCG	2 cut(s)	332, 428
HpyAV	CCTTC	2 cut(s)	370, 466
HpyCH4III	ACNGT	5 cut(s)	226, 232, 286, 373, 452
HpyCH4IV	ACGT	5 cut(s)	10, 120, 384, 398, 516
HpyCH4V	TGCA	2 cut(s)	355, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 385, 425, 437
HpyF3I	CTNAG	3 cut(s)	52, 468, 588
HpySE526I	ACGT	5 cut(s)	10, 120, 384, 398, 516
Hsp92I	GRCGYC	2 cut(s)	426, 511
Hsp92II	CATG	2 cut(s)	177, 355
HspAI	GCGC	5 cut(s)	248, 270, 411, 511, 549
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	5 cut(s)	10, 120, 384, 398, 516
MaeIII	GTNAC	6 cut(s)	106, 169, 226, 380, 517, 626
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	6 cut(s)	70, 167, 289, 292, 571, 604
MhlI	GDGCHC	1 cut(s)	390
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	251, 334, 507
MspR9I	CCNGG	3 cut(s)	334, 508, 569
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	4 cut(s)	248, 270, 272, 411
MwoI	GCNNNNNNNGC	4 cut(s)	11, 385, 425, 437
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	2 cut(s)	334, 508
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	2 cut(s)	177, 355
NlaIV	GGNNCC	2 cut(s)	465, 512
NmeAIII	GCCGAG	2 cut(s)	191, 457
NmuCI	GTSAC	3 cut(s)	226, 380, 517
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 429
PfeI	GAWTC	1 cut(s)	19
Pfl23II	CGTACG	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	514
PmaCI	CACGTG	2 cut(s)	11, 517
PmlI	CACGTG	2 cut(s)	11, 517
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	3 cut(s)	11, 399, 517
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	567
PspCI	CACGTG	2 cut(s)	11, 517
PspFI	CCCAGC	5 cut(s)	14, 149, 196, 200, 572
PspGI	CCWGG	1 cut(s)	567
PspLI	CGTACG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	465, 512
PspPI	GGNCC	1 cut(s)	464
PspPPI	RGGWCCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	341, 401, 408
RsaNI	GTAC	3 cut(s)	340, 400, 407
SalI	GTCGAC	1 cut(s)	263
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	334, 508, 569
SduI	GDGCHC	1 cut(s)	390
SfoI	GGCGCC	1 cut(s)	512
SgrAI	CRCCGGYG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	464
SsiI	CCGC	4 cut(s)	268, 393, 429, 440
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	1 cut(s)	631
StyD4I	CCNGG	3 cut(s)	332, 506, 567
TaaI	ACNGT	5 cut(s)	226, 232, 286, 373, 452
TaiI	ACGT	5 cut(s)	13, 123, 387, 401, 519
TaqI	TCGA	3 cut(s)	264, 363, 375
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	3 cut(s)	226, 380, 517
Tsp45I	GTSAC	3 cut(s)	226, 380, 517
TspDTI	ATGAA	1 cut(s)	571
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.