Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Forward (+)

2074781 .. 2076104

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1024800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGAGGAAGCTGGAAAAACCCATTGAGATAAAGAATGATCAGGAAAGCAAAACCGAGCATGAGGAACAACAGAAACACAGCAAGGAAAAAGATGAGCAGAAGGAGGAAGACGATTCACTTCCTCTAATGGCGTTGAACCACGTATCGAGGTTGTGCAGAAATGTGGAGGAGTCGGTGGATTTCTATACCAAAGTGTTAGGGTTTGTTAAGATTGAGAGGCCACCAGCTTTTGATTTTGATGGGGCTTGGTTGTTTAATTATGGAGTTGGGGTTCACTTGGTGCAGTCTGAGGATGAGGAGAGGCTTCCACCTAATCAGGATCACTTGGATCCCATGGACAACCATATCTCTTTCCAGTGTGAAGACATGGAAGCAATGGAGCGGAAGTTGAAGAAGCTGGATATAAAGTACATAAAAAGAGCAGTCGAGGATGACGAAAACGGAACCACAATCGACCAACTCTTCTTCAACGATCCAGACGGATTCATGGTTGAGATGTGCAACTGTGAGAATCTCAAGCTTGTTCCTGCAGGTTCCTTGGGCAGAATAAAGCTTCCAGTTGATAGGCATACTCCCCCTGTTGAACTCAACCAAAACGACAATGGCAAAAGACAACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

209

Amino Acids

24.27

Weight (kDa)

4.82

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	46 - 167	5.7e-13	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	47 - 151	9.4e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AccBSI	CCGCTC	1 cut(s)	385
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	4 cut(s)	326, 330, 339, 470
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	139, 394, 472, 587
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	5 cut(s)	13, 230, 400, 523, 556
AluI	AGCT	5 cut(s)	13, 230, 400, 523, 556
AlwI	GGATC	4 cut(s)	326, 330, 339, 470
AoxI	GGCC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	117, 372
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	524
BmiI	GGNNCC	3 cut(s)	333, 448, 538
BpiI	GAAGAC	2 cut(s)	117, 372
BpuEI	CTTGAG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	336, 540
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 374, 404
Bse1I	ACTGG	2 cut(s)	358, 560
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	336, 540
BseGI	GGATG	2 cut(s)	301, 439
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	358, 560
BseRI	GAGGAG	2 cut(s)	185, 314
BsgI	GTGCAG	2 cut(s)	178, 305
BshFI	GGCC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	40, 322, 331, 475
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	333, 448, 538
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	4 cut(s)	326, 330, 339, 470
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	358, 560
BssECI	CCNNGG	2 cut(s)	336, 540
BssMI	GATC	4 cut(s)	40, 322, 331, 475
BssT1I	CCWWGG	2 cut(s)	336, 540
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	301, 439
BstKTI	GATC	4 cut(s)	43, 325, 334, 478
BstMBI	GATC	4 cut(s)	40, 322, 331, 475
BstSFI	CTRYAG	1 cut(s)	531
BstV2I	GAAGAC	2 cut(s)	117, 372
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	301, 439
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	62, 337, 370, 490
CviJI	RGCY	8 cut(s)	13, 223, 230, 248, 307, 400, 523, 556
CviKI_1	RGCY	8 cut(s)	13, 223, 230, 248, 307, 400, 523, 556
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	42, 324, 333, 477
DpnII	GATC	4 cut(s)	40, 322, 331, 475
DraIII	CACNNNGTG	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	336, 540
EcoT14I	CCWWGG	2 cut(s)	336, 540
ErhI	CCWWGG	2 cut(s)	336, 540
FaeI	CATG	4 cut(s)	65, 340, 373, 493
FatI	CATG	4 cut(s)	61, 336, 369, 489
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	2 cut(s)	308, 446
HaeIII	GGCC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	65, 340, 373, 493
HindIII	AAGCTT	2 cut(s)	521, 554
HinfI	GANTC	4 cut(s)	116, 173, 486, 514
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	3 cut(s)	44, 320, 479
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	159, 286, 504, 533
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	65, 340, 373, 493
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 322, 331, 475
LmnI	GCTCC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	144
MalI	GATC	4 cut(s)	42, 324, 333, 477
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	4 cut(s)	40, 322, 331, 475
MboII	GAAGA	5 cut(s)	122, 377, 406, 457, 460
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	182
MseI	TTAA	2 cut(s)	210, 258
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	4 cut(s)	40, 322, 331, 475
NlaIII	CATG	4 cut(s)	65, 340, 373, 493
NlaIV	GGNNCC	3 cut(s)	333, 448, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	116, 486, 514
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	333, 448, 538
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	210, 258
Sau3AI	GATC	4 cut(s)	40, 322, 331, 475
SbfI	CCTGCAGG	1 cut(s)	535
SchI	GAGTC	1 cut(s)	182
SdaI	CCTGCAGG	1 cut(s)	535
SetI	ASST	9 cut(s)	15, 147, 155, 232, 316, 402, 525, 538, 558
SfcI	CTRYAG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse8387I	CCTGCAGG	1 cut(s)	535
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	336, 540
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	149, 429, 456
TasI	AATT	1 cut(s)	259
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	116, 486, 514
Tru1I	TTAA	2 cut(s)	210, 258
Tru9I	TTAA	2 cut(s)	210, 258
TscAI	CASTG	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	478
TspGWI	ACGGA	2 cut(s)	459, 498
TspRI	CASTG	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.