Rmu_sc0004803.1_g000006
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004803.1
OG0003747
Physical Location & Seq
Forward (+)
30789 .. 31379
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004803.1_g000006.1.cds

Sequence Viewer

Length: 360 bp
atggtctatggagttgggattcacttggtgcagtccaaggaaaaggataggctccctgatcaagatcatttggatcccatggacaaccacatctcatttcagtgtgaggatatggatgcaatggtgaagaaattggaggagctaaacatagagtacatgaagaggacagtggaggatgataaaaatcggacaaaaattgatcaaatcttcttcaatgacccagatggattcatgattgagatatgcaattgtgagaatctcaagcttgttcctgcaggttccttgggcaaaataaagctgccaattgataggcataatcctcttgtggatatgggtgacaatggtactgatgccaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

4.77

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AclWI GGATC 2 cut(s) 68, 81
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 2 cut(s) 155, 346
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 3 cut(s) 142, 265, 298
AluI AGCT 3 cut(s) 142, 265, 298
AlwI GGATC 2 cut(s) 68, 81
ApeKI GCWGC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 136, 347
BamHI GGATCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 218
BclI TGATCA 2 cut(s) 58, 199
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmiI GGNNCC 3 cut(s) 53, 75, 280
BmsI GCATC 2 cut(s) 106, 340
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 63, 183
BsaJI CCNNGG 3 cut(s) 36, 78, 282
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 2 cut(s) 63, 183
BseDI CCNNGG 3 cut(s) 36, 78, 282
BseGI GGATG 2 cut(s) 121, 181
BseJI GATNNNNATC 2 cut(s) 63, 183
BseMI GCAATG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 50
Bsp143I GATC 4 cut(s) 58, 64, 73, 199
Bsp19I CCATGG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 53, 75, 280
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 68, 81
BsrDI GCAATG 1 cut(s) 126
BssECI CCNNGG 3 cut(s) 36, 78, 282
BssMI GATC 4 cut(s) 58, 64, 73, 199
BssT1I CCWWGG 3 cut(s) 36, 78, 282
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 121, 181
BstKTI GATC 4 cut(s) 61, 67, 76, 202
BstMBI GATC 4 cut(s) 58, 64, 73, 199
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 2 cut(s) 121, 181
BtsIMutI CAGTG 2 cut(s) 107, 174
BveI ACCTGC 1 cut(s) 266
CciI TCATGA 1 cut(s) 231
Csp6I GTAC 2 cut(s) 154, 345
CviAII CATG 3 cut(s) 79, 157, 232
CviJI RGCY 4 cut(s) 52, 142, 265, 298
CviKI_1 RGCY 4 cut(s) 52, 142, 265, 298
CviQI GTAC 2 cut(s) 154, 345
DpnI GATC 4 cut(s) 60, 66, 75, 201
DpnII GATC 4 cut(s) 58, 64, 73, 199
DraIII CACNNNGTG 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 36, 78, 282
EcoT14I CCWWGG 3 cut(s) 36, 78, 282
ErhI CCWWGG 3 cut(s) 36, 78, 282
FaeI CATG 3 cut(s) 82, 160, 235
FaiI YATR 9 cut(s) 9, 80, 113, 149, 158, 233, 244, 315, 332
FatI CATG 3 cut(s) 78, 156, 231
FbaI TGATCA 2 cut(s) 58, 199
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 2 cut(s) 128, 188
Fsp4HI GCNGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 299
Hin1II CATG 3 cut(s) 82, 160, 235
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 19, 228, 256
HphI GGTGA 2 cut(s) 136, 347
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 62, 232
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 31, 119, 246, 275
Hsp92II CATG 3 cut(s) 82, 160, 235
Ksp22I TGATCA 2 cut(s) 58, 199
Kzo9I GATC 4 cut(s) 58, 64, 73, 199
LmnI GCTCC 2 cut(s) 57, 139
LpnPI CCDG 4 cut(s) 69, 234, 261, 285
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 106, 340
MaeIII GTNAC 1 cut(s) 335
MalI GATC 4 cut(s) 60, 66, 75, 201
MboI GATC 4 cut(s) 58, 64, 73, 199
MboII GAAGA 4 cut(s) 139, 172, 199, 202
MfeI CAATTG 2 cut(s) 247, 303
MflI RGATCY 1 cut(s) 73
MluCI AATT 4 cut(s) 131, 195, 247, 303
MnlI CCTC 5 cut(s) 100, 130, 156, 166, 330
MslI CAYNNNNRTG 1 cut(s) 100
MunI CAATTG 2 cut(s) 247, 303
NcoI CCATGG 1 cut(s) 78
NdeII GATC 4 cut(s) 58, 64, 73, 199
NlaIII CATG 3 cut(s) 82, 160, 235
NlaIV GGNNCC 3 cut(s) 53, 75, 280
NmuCI GTSAC 1 cut(s) 335
PagI TCATGA 1 cut(s) 231
PfeI GAWTC 3 cut(s) 19, 228, 256
PkrI GCNGC 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 53, 75, 280
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 155, 346
RsaNI GTAC 2 cut(s) 154, 345
RseI CAYNNNNRTG 1 cut(s) 100
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 4 cut(s) 58, 64, 73, 199
SbfI CCTGCAGG 1 cut(s) 277
SdaI CCTGCAGG 1 cut(s) 277
SetI ASST 4 cut(s) 144, 267, 280, 300
SfaNI GCATC 2 cut(s) 106, 340
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse8387I CCTGCAGG 1 cut(s) 277
Sse9I AATT 4 cut(s) 131, 195, 247, 303
StyI CCWWGG 3 cut(s) 36, 78, 282
TaaI ACNGT 1 cut(s) 169
TasI AATT 4 cut(s) 131, 195, 247, 303
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 3 cut(s) 19, 228, 256
TscAI CASTG 2 cut(s) 107, 174
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 173, 220
TspRI CASTG 2 cut(s) 107, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.