Rorug01G0487200
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003747
Physical Location & Seq
Forward (+)
57301406 .. 57302529
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0487200.1

Sequence Viewer

Length: 1029 bp
ATGGGAAGATCAGCATGTTGTGATGAAAATGGGTTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGAGTACATGGAGAGGTGCGGTGGCGATGGGAATCATCATCGCGGCGGAATTAGTTGGAGACAAGTGCCAAAGCTTGCAGGTTTGAAGAGGTGTGGAAAGAGCTGCAGGCTACGATGGACCAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGCAAACCATCATCAATCTCCATAAACTGCTCGGAAACAAATGGTCCGAGATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAGCTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATTATCTCTCCACCATAGCTGCTAGTACTAGCTTCAGTCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAACGGCAAGGACTTCTAATTAGCAACAACACTGGTCCTAATGCATATGATCAGTATCGCTCATGTATGCTAGGGATGGAGATGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGGTCATCACCATCCAGAAGCTGCTCAGTTCCGGACCAACAGCTAGTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAAATAGTGCAACCATGATGAATCGTCATTCTAATTGTCTCCAAGGTACTTCTTTCGGGACTAGTGAGTATGATCATCATGATTCCAAGTTTGCCATTCCAAATATGAAAGTCCCATCCAGTACTGATGATGATCATCATAAGCTGCAGTATGGTGAGGGTGGTCATCATTATCATCAATTGCCTGTTTTGGTTTCAGCAGCCACCTCGGCCTACGTCACTATCACTCATGATACTACTGCTAATGATCAATTTGCTACCCCAAATATTCCTCATAGATCACCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

342

Amino Acids

38.48

Weight (kDa)

6.84

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 69 5.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 85 1.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 120 1.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 123 3.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 146
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 96, 120, 123
AcuI CTGAAG 1 cut(s) 442
AfaI GTAC 5 cut(s) 83, 451, 488, 787, 862
AgsI TTSAA 2 cut(s) 163, 493
AhlI ACTAGT 1 cut(s) 800
AluBI AGCT 9 cut(s) 73, 151, 180, 370, 443, 456, 672, 694, 883
AluI AGCT 9 cut(s) 73, 151, 180, 370, 443, 456, 672, 694, 883
Alw26I GTCTC 2 cut(s) 130, 782
AlwNI CAGNNNCTG 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 3 cut(s) 44, 209, 948
ApeKI GCWGC 8 cut(s) 180, 370, 443, 617, 620, 672, 883, 938
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 5 cut(s) 44, 195, 291, 563, 685
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 388, 651, 905, 1011
AvaII GGWCC 4 cut(s) 195, 291, 563, 685
BbvI GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
BccI CCATC 7 cut(s) 98, 186, 263, 598, 604, 670, 862
BceAI ACGGC 2 cut(s) 31, 548
BcgI CGANNNNNNTGC 2 cut(s) 927, 961
BclI TGATCA 4 cut(s) 577, 811, 871, 985
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 130, 782
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 5 cut(s) 447, 453, 599, 695, 801
BfmI CTRYAG 3 cut(s) 181, 621, 884
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
BlsI GCNGC 9 cut(s) 122, 182, 372, 445, 619, 622, 674, 885, 940
BmcAI AGTACT 3 cut(s) 451, 488, 862
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 4 cut(s) 195, 291, 563, 685
BmgT120I GGNCC 5 cut(s) 44, 195, 291, 563, 685
BmrFI CCNGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 4 cut(s) 108, 582, 870, 873
BsaJI CCNNGG 3 cut(s) 47, 781, 945
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse1I ACTGG 3 cut(s) 484, 565, 858
Bse8I GATNNNNATC 4 cut(s) 108, 582, 870, 873
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 47, 781, 945
BseGI GGATG 3 cut(s) 609, 662, 854
BseJI GATNNNNATC 4 cut(s) 108, 582, 870, 873
BseMII CTCAG 2 cut(s) 197, 690
BseNI ACTGG 3 cut(s) 484, 565, 858
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 46, 211, 950
BsiSI CCGG 2 cut(s) 314, 683
BslFI GGGAC 2 cut(s) 811, 836
BsmAI GTCTC 2 cut(s) 130, 782
BsmFI GGGAC 2 cut(s) 811, 836
BsnI GGCC 3 cut(s) 46, 211, 950
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
BspACI CCGC 3 cut(s) 96, 120, 123
BspANI GGCC 3 cut(s) 46, 211, 950
BspCNI CTCAG 2 cut(s) 198, 689
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 3 cut(s) 421, 817, 967
BspMAI CTGCAG 3 cut(s) 185, 625, 888
BspMI ACCTGC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 240
BsrI ACTGG 3 cut(s) 484, 565, 858
BssECI CCNNGG 3 cut(s) 47, 781, 945
BssMI GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
BssT1I CCWWGG 1 cut(s) 781
Bst6I CTCTTC 2 cut(s) 158, 240
BstC8I GCNNGC 3 cut(s) 153, 185, 304
BstDEI CTNAG 2 cut(s) 206, 676
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 609, 662, 854
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 6 cut(s) 11, 580, 814, 874, 988, 1019
BstMAI GTCTC 2 cut(s) 130, 782
BstMBI GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 3 cut(s) 181, 621, 884
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 46, 211, 950
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 101, 117
BtsCI GGATG 3 cut(s) 609, 662, 854
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 153, 185, 304
CaiI CAGNNNCTG 1 cut(s) 672
CciI TCATGA 3 cut(s) 421, 817, 967
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 5 cut(s) 44, 195, 291, 563, 685
Csp6I GTAC 5 cut(s) 82, 450, 487, 786, 861
CviQI GTAC 5 cut(s) 82, 450, 487, 786, 861
DdeI CTNAG 2 cut(s) 206, 676
DpnI GATC 6 cut(s) 10, 579, 813, 873, 987, 1018
DpnII GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
DraI TTTAAA 2 cut(s) 360, 741
Eam1104I CTCTTC 2 cut(s) 158, 240
EarI CTCTTC 2 cut(s) 158, 240
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 781
Eco147I AGGCCT 1 cut(s) 211
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 4 cut(s) 195, 291, 563, 685
Eco57I CTGAAG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 781
FaqI GGGAC 2 cut(s) 811, 836
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 4 cut(s) 577, 811, 871, 985
Fnu4HI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
FokI GGATG 3 cut(s) 616, 649, 841
Fsp4HI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
FspBI CTAG 5 cut(s) 447, 453, 599, 695, 801
GlaI GCGC 1 cut(s) 477
GluI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 3 cut(s) 46, 211, 950
HapII CCGG 2 cut(s) 314, 683
HhaI GCGC 1 cut(s) 478
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 109, 384, 760, 821
HpaII CCGG 2 cut(s) 314, 683
HphI GGTGA 4 cut(s) 388, 651, 905, 1011
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 207, 281, 295
Hpy188III TCNNGA 9 cut(s) 220, 337, 346, 422, 666, 683, 796, 818, 968
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 312, 320
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 8 cut(s) 155, 183, 416, 514, 572, 623, 749, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpyF3I CTNAG 2 cut(s) 206, 676
HpySE526I ACGT 1 cut(s) 954
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 682
Ksp22I TGATCA 4 cut(s) 577, 811, 871, 985
Kzo9I GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 378, 483
Lsp1109I GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
MaeI CTAG 5 cut(s) 447, 453, 599, 695, 801
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 2 cut(s) 394, 955
MalI GATC 6 cut(s) 10, 579, 813, 873, 987, 1018
MboI GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
MboII GAAGA 6 cut(s) 18, 71, 74, 175, 257, 376
MfeI CAATTG 1 cut(s) 917
MluCI AATT 8 cut(s) 126, 408, 546, 628, 640, 772, 917, 989
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 9 cut(s) 84, 159, 201, 216, 491, 607, 889, 955, 1020
Mph1103I ATGCAT 1 cut(s) 574
MroI TCCGGA 1 cut(s) 682
MseI TTAA 4 cut(s) 35, 359, 627, 740
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 2 cut(s) 314, 683
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 917
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 947
NciI CCSGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 574
NdeII GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
NmeAIII GCCGAG 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 394, 955
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 18
PagI TCATGA 3 cut(s) 421, 817, 967
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 109, 384, 760, 821
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 9 cut(s) 122, 182, 372, 445, 619, 622, 674, 885, 940
PsiI TTATAA 1 cut(s) 636
PspPI GGNCC 5 cut(s) 44, 195, 291, 563, 685
PstI CTGCAG 3 cut(s) 185, 625, 888
PstNI CAGNNNCTG 1 cut(s) 672
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 5 cut(s) 83, 451, 488, 787, 862
RsaNI GTAC 5 cut(s) 82, 450, 487, 786, 861
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 4 cut(s) 35, 359, 627, 740
SatI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
Sau3AI GATC 6 cut(s) 8, 577, 811, 871, 985, 1016
Sau96I GGNCC 5 cut(s) 44, 195, 291, 563, 685
ScaI AGTACT 3 cut(s) 451, 488, 862
ScrFI CCNGG 1 cut(s) 315
SfcI CTRYAG 3 cut(s) 181, 621, 884
SinI GGWCC 4 cut(s) 195, 291, 563, 685
SmiI ATTTAAAT 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 711
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 8 cut(s) 126, 408, 546, 628, 640, 772, 917, 989
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 3 cut(s) 96, 120, 123
SspI AATATT 1 cut(s) 1006
SspMI CTAG 5 cut(s) 447, 453, 599, 695, 801
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 781
SwaI ATTTAAAT 1 cut(s) 741
TaiI ACGT 1 cut(s) 957
TaqI TCGA 1 cut(s) 387
TasI AATT 8 cut(s) 126, 408, 546, 628, 640, 772, 917, 989
TatI WGTACW 4 cut(s) 81, 449, 486, 860
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 109, 384, 760, 821
Tru1I TTAA 4 cut(s) 35, 359, 627, 740
Tru9I TTAA 4 cut(s) 35, 359, 627, 740
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 2 cut(s) 394, 955
TseI GCWGC 8 cut(s) 180, 370, 443, 617, 620, 672, 883, 938
Tsp45I GTSAC 2 cut(s) 394, 955
TspDTI ATGAA 4 cut(s) 39, 81, 773, 860
TspRI CASTG 1 cut(s) 565
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 195, 291, 563, 685
XceI RCATGY 1 cut(s) 18
XspI CTAG 5 cut(s) 447, 453, 599, 695, 801
ZrmI AGTACT 3 cut(s) 451, 488, 862
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.