RchiOBHm_Chr1g0318471
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003747
Physical Location & Seq
Forward (+)
5960967 .. 5961335
369 bp
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UTR
Exon/CDS
Intron
PRQ54876

Sequence Viewer

Length: 369 bp
ATGCAGCAGATGAAGGAAGAAGAATCTAATGGGCAAGAGAAGAAGTTATCTACCAATGAGGAAAGCCAACACAAAGAAAAGGATTATGAAGGGAAAGATCAAAAGGAAGAGCACCAGCTTCCTCTAATGGCCTTGAATCTTGTATCGAGGCTTTGTAGGAATGTGGAGGAGTCGGTAGATTTCTACACCAAAATGTTGGGGTTTGTCAAGATTGAGAGGCCACCGGCTTTTGATTTCGACGGCGCTTGGCTGTTTAACTATGGAGTTGGGATTCACTTGGTGCAGTCCAAAGATAAGGATAGGCTCCCTGATCAAGATCATTTGGATCCCATGGACAACCACATCTCATTTCAGGTTCATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

122

Amino Acids

14.33

Weight (kDa)

5.05

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 320, 333
AdeI CACNNNGTG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 2 cut(s) 320, 333
AoxI GGCC 2 cut(s) 129, 218
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 245
BamHI GGATCC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 256
BclI TGATCA 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 305, 327
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 2 cut(s) 131, 220
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 224
BsnI GGCC 2 cut(s) 131, 220
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 97, 310, 316, 325
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 2 cut(s) 131, 220
BspLI GGNNCC 2 cut(s) 305, 327
BspPI GGATC 2 cut(s) 320, 333
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 97, 310, 316, 325
BssT1I CCWWGG 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 100, 313, 319, 328
BstMBI GATC 4 cut(s) 97, 310, 316, 325
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 131, 220
BtgI CCRYGG 1 cut(s) 330
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 223
CviAII CATG 1 cut(s) 331
CviJI RGCY 8 cut(s) 66, 118, 131, 151, 220, 227, 250, 304
CviKI_1 RGCY 8 cut(s) 66, 118, 131, 151, 220, 227, 250, 304
DpnI GATC 4 cut(s) 99, 312, 318, 327
DpnII GATC 4 cut(s) 97, 310, 316, 325
DraIII CACNNNGTG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 1 cut(s) 334
FaiI YATR 3 cut(s) 87, 261, 332
FatI CATG 1 cut(s) 330
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 5
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 131, 220
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 4 cut(s) 23, 136, 170, 271
HpaII CCGG 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 208, 314
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 7, 83
HpyCH4V TGCA 2 cut(s) 4, 283
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 97, 310, 316, 325
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 4 cut(s) 128, 237, 321, 338
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 4 cut(s) 99, 312, 318, 327
MboI GATC 4 cut(s) 97, 310, 316, 325
MboII GAAGA 4 cut(s) 29, 32, 52, 119
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 5 cut(s) 52, 132, 141, 160, 210
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 224
NcoI CCATGG 1 cut(s) 330
NdeII GATC 4 cut(s) 97, 310, 316, 325
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 2 cut(s) 305, 327
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 23, 136, 271
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 305, 327
PsuI RGATCY 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 97, 310, 316, 325
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 114
SetI ASST 2 cut(s) 120, 357
SmiMI CAYNNNNRTG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 2 cut(s) 146, 237
TfiI GAWTC 3 cut(s) 23, 136, 271
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 26, 102, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.