Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Forward (+)

3393451 .. 3395107

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAAGAAAGAATGGGAAATCCTCTGCAATTGAAGTCCTTGAATCACATCTCACTGGTTTGCAGGTCGGTCGAGAAATCCATCGATTTCTACCAGAATGTTCTTGGCTTCTTTCCCATTAGGAGGCCTGACTCCCTAGATTTCAATGGTGCATGGTTATTCAACTATGGCATTGGCATTCATCTCCTTCAAGCTGAAGACCCCGAGAAGCTGCCTAAGATCAGCCAGATTAACCCCAAAGATAACCACATTTCTTTCCAGTGTGAGAGCATGGTCAGAGTGGAGAACAAATTGAAGGAGATGGAGATCGAATACGTGTGGAGCAGGGTAGAGGAAGGAGGAATCAACGTTGATCAGCTCTTCTTCCATGACCCAGATGGCACCATGATTGAGATCTGCAACTGTGACAACCTCCCTGTGATACCTCTAGTTGGAGATCAACCTCTCAGATCTTGCACAGGTGTGAAGTGCAAAGTGCAGCAGCAAGAAGCAATAGCCCAGATGAAACCTCAGCAGCAAACCATGACCTGCCTGCGTTCTAATTCTATACACATGAACGACGACTATCTTCCTTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

193

Amino Acids

22.13

Weight (kDa)

5.36

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	14 - 132	4.7e-12	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_2	PF12681	17 - 134	6.2e-06	Glyoxalase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	54, 536
AccB1I	GGYRCC	1 cut(s)	380
AclI	AACGTT	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	123, 431
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	6 cut(s)	34, 43, 145, 163, 191, 295
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	194, 211, 358
AluI	AGCT	3 cut(s)	194, 211, 358
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	4 cut(s)	211, 478, 481, 514
AvaI	CYCGRG	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	4 cut(s)	198, 490, 493, 526
BccI	CCATC	3 cut(s)	89, 295, 371
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	2 cut(s)	137, 428
BfuAI	ACCTGC	2 cut(s)	54, 536
BglII	AGATCT	2 cut(s)	393, 449
BisI	GCNGC	4 cut(s)	212, 479, 482, 515
BlsI	GCNGC	4 cut(s)	213, 480, 483, 516
BmeT110I	CYCGRG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	2 cut(s)	305, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 431
Bse1I	ACTGG	2 cut(s)	60, 259
Bse8I	GATNNNNATC	2 cut(s)	305, 392
BseCI	ATCGAT	1 cut(s)	84
BseJI	GATNNNNATC	2 cut(s)	305, 392
BseLI	CCNNNNNNNGG	2 cut(s)	123, 431
BseMII	CTCAG	2 cut(s)	460, 524
BseNI	ACTGG	2 cut(s)	60, 259
BseXI	GCAGC	4 cut(s)	198, 490, 493, 526
BsgI	GTGCAG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	123, 431
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	459, 523
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	382
BspMI	ACCTGC	2 cut(s)	54, 536
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	60, 259
BssMI	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	216, 446, 510
BstKTI	GATC	6 cut(s)	222, 309, 355, 396, 439, 452
BstMBI	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
BstMCI	CGRYCG	1 cut(s)	72
BstV1I	GCAGC	4 cut(s)	198, 490, 493, 526
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	393, 449
BstYI	RGATCY	2 cut(s)	393, 449
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	53, 266
BveI	ACCTGC	2 cut(s)	54, 536
Cac8I	GCNNGC	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	84
CviAII	CATG	6 cut(s)	153, 271, 368, 385, 523, 553
CviJI	RGCY	7 cut(s)	108, 127, 194, 211, 225, 358, 497
CviKI_1	RGCY	7 cut(s)	108, 127, 194, 211, 225, 358, 497
DdeI	CTNAG	3 cut(s)	216, 446, 510
DpnI	GATC	6 cut(s)	221, 308, 354, 395, 438, 451
DpnII	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	203
FaeI	CATG	6 cut(s)	156, 274, 371, 388, 526, 556
FaiI	YATR	8 cut(s)	154, 168, 272, 369, 386, 524, 548, 554
FatI	CATG	6 cut(s)	152, 270, 367, 384, 522, 552
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	212, 479, 482, 515
Fsp4HI	GCNGC	4 cut(s)	212, 479, 482, 515
FspBI	CTAG	2 cut(s)	137, 428
GluI	GCNGC	4 cut(s)	212, 479, 482, 515
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	6 cut(s)	156, 274, 371, 388, 526, 556
HinfI	GANTC	3 cut(s)	43, 131, 342
Hpy188I	TCNGA	2 cut(s)	278, 449
Hpy188III	TCNNGA	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	3 cut(s)	197, 289, 329
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	315, 348
HpyCH4V	TGCA	7 cut(s)	28, 63, 152, 399, 456, 471, 478
HpyF3I	CTNAG	3 cut(s)	216, 446, 510
HpySE526I	ACGT	2 cut(s)	315, 348
Hsp92II	CATG	6 cut(s)	156, 274, 371, 388, 526, 556
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	321
Lsp1109I	GCAGC	4 cut(s)	198, 490, 493, 526
MaeI	CTAG	2 cut(s)	137, 428
MaeII	ACGT	2 cut(s)	315, 348
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	6 cut(s)	221, 308, 354, 395, 438, 451
MboI	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
MboII	GAAGA	4 cut(s)	209, 352, 355, 560
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	2 cut(s)	393, 449
MluCI	AATT	3 cut(s)	29, 290, 541
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	33, 117, 325, 332, 422, 435, 453, 519
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	177
NdeII	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
NlaIII	CATG	6 cut(s)	156, 274, 371, 388, 526, 556
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	43, 342
PkrI	GCNGC	4 cut(s)	213, 480, 483, 516
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	316
Psp1406I	AACGTT	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	393, 449
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	212, 479, 482, 515
Sau3AI	GATC	6 cut(s)	219, 306, 352, 393, 436, 449
SchI	GAGTC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	29, 290, 541
SseBI	AGGCCT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	137, 428
StuI	AGGCCT	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	2 cut(s)	318, 351
TaqI	TCGA	3 cut(s)	72, 84, 309
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	29, 290, 541
TfiI	GAWTC	2 cut(s)	43, 342
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	60, 266
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	4 cut(s)	211, 478, 481, 514
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	17, 170, 518, 569
TspRI	CASTG	2 cut(s)	60, 266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	101, 374
XspI	CTAG	2 cut(s)	137, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.