Rh2CG042700
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003747
Physical Location & Seq
Forward (+)
3407506 .. 3408478
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG042700.1

Sequence Viewer

Length: 588 bp
ATGAAAGAAAGAATGGGAAATCCTCTGCAATTGAAGTCCTTGAATCACATCTCACTGGTTTGCAGGTCGGTCGAGAAATCCATCGATTTCTACCAGAATGTTCTTGGCTTCTTTCCCATTAGGAGGCCTGACTCCCTAGATTTCAATGGTGCATGGTTATTCAACTATGGCATTGGCATTCATCTCCTTCAAGCTGAAGACCCCGAGAAGCTGCCTAAGATCAGCCAGATTAACCCCAAAGATAACCACATTTCTTTCCAGTGTGAGAGCATGGTCAGAGTGGAGAACAAATTGAAGGAGATGGAGATCGAATACGTGTGGAGCAGGGTAGAGGAAGGAGGAATCAACGTTGATCAGCTCTTCTTGCATGACCCAGATGGCACCATGATCGAGATCTGCAACTGTGACAACCTCCCTGTGATACCTCTAGTTGGAGATCAACCTCTCAGATCTTGCACAAGTGTGAAGTGCAAAGTGCAGCAGCAACAGCAAGAAGCAATAGCCCAGATAAAACCTCAGCAGCAAACCATGACCTGCCTGCGTTCTAATTCTATACACATGAACGACGACTATCTTCCTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

195

Amino Acids

22.36

Weight (kDa)

5.36

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 14 - 132 3e-11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 542
AccB1I GGYRCC 1 cut(s) 380
AclI AACGTT 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 123, 431
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 6 cut(s) 34, 43, 145, 163, 191, 295
AleI CACNNNNGTG 1 cut(s) 461
AluBI AGCT 3 cut(s) 194, 211, 358
AluI AGCT 3 cut(s) 194, 211, 358
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 211, 478, 481, 520
AvaI CYCGRG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 198, 490, 493, 532
BccI CCATC 3 cut(s) 89, 295, 371
BcgI CGANNNNNNTGC 4 cut(s) 52, 86, 370, 404
BclI TGATCA 1 cut(s) 352
BfaI CTAG 2 cut(s) 137, 428
BfuAI ACCTGC 2 cut(s) 54, 542
BglII AGATCT 2 cut(s) 393, 449
BisI GCNGC 4 cut(s) 212, 479, 482, 521
BlsI GCNGC 4 cut(s) 213, 480, 483, 522
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 516
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 2 cut(s) 305, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 431
Bse1I ACTGG 2 cut(s) 60, 259
Bse8I GATNNNNATC 2 cut(s) 305, 392
BseCI ATCGAT 1 cut(s) 84
BseJI GATNNNNATC 2 cut(s) 305, 392
BseLI CCNNNNNNNGG 2 cut(s) 123, 431
BseMII CTCAG 2 cut(s) 460, 530
BseNI ACTGG 2 cut(s) 60, 259
BseXI GCAGC 4 cut(s) 198, 490, 493, 532
BsgI GTGCAG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 123, 431
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 459, 529
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 382
BspMI ACCTGC 2 cut(s) 54, 542
BspQI GCTCTTC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 60, 259
BssMI GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 3 cut(s) 216, 446, 516
BstKTI GATC 7 cut(s) 222, 309, 355, 390, 396, 439, 452
BstMBI GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 364, 487
BstV1I GCAGC 4 cut(s) 198, 490, 493, 532
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 393, 449
BstYI RGATCY 2 cut(s) 393, 449
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 1 cut(s) 127
BsuTUI ATCGAT 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 53, 266
BveI ACCTGC 2 cut(s) 54, 542
Cac8I GCNNGC 1 cut(s) 539
ClaI ATCGAT 1 cut(s) 84
CviAII CATG 6 cut(s) 153, 271, 368, 385, 529, 559
CviJI RGCY 7 cut(s) 108, 127, 194, 211, 225, 358, 503
CviKI_1 RGCY 7 cut(s) 108, 127, 194, 211, 225, 358, 503
DdeI CTNAG 3 cut(s) 216, 446, 516
DpnI GATC 7 cut(s) 221, 308, 354, 389, 395, 438, 451
DpnII GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 203
FaeI CATG 6 cut(s) 156, 274, 371, 388, 532, 562
FaiI YATR 8 cut(s) 154, 168, 272, 369, 386, 530, 554, 560
FatI CATG 6 cut(s) 152, 270, 367, 384, 528, 558
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 212, 479, 482, 521
Fsp4HI GCNGC 4 cut(s) 212, 479, 482, 521
FspBI CTAG 2 cut(s) 137, 428
GluI GCNGC 4 cut(s) 212, 479, 482, 521
HaeIII GGCC 1 cut(s) 127
Hin1II CATG 6 cut(s) 156, 274, 371, 388, 532, 562
HinfI GANTC 3 cut(s) 43, 131, 342
Hpy188I TCNGA 2 cut(s) 278, 449
Hpy188III TCNNGA 2 cut(s) 73, 391
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 3 cut(s) 197, 289, 329
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 2 cut(s) 315, 348
HpyCH4V TGCA 8 cut(s) 28, 63, 152, 367, 399, 456, 471, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 487
HpyF3I CTNAG 3 cut(s) 216, 446, 516
HpySE526I ACGT 2 cut(s) 315, 348
Hsp92II CATG 6 cut(s) 156, 274, 371, 388, 532, 562
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 4 cut(s) 198, 490, 493, 532
MaeI CTAG 2 cut(s) 137, 428
MaeII ACGT 2 cut(s) 315, 348
MaeIII GTNAC 1 cut(s) 404
MalI GATC 7 cut(s) 221, 308, 354, 389, 395, 438, 451
MboI GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
MboII GAAGA 3 cut(s) 209, 352, 566
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 2 cut(s) 393, 449
MluCI AATT 3 cut(s) 29, 290, 547
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 8 cut(s) 33, 117, 325, 332, 422, 435, 453, 525
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 461
MunI CAATTG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 364, 487
NdeII GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
NlaIII CATG 6 cut(s) 156, 274, 371, 388, 532, 562
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 461
PceI AGGCCT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 365
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 43, 342
PkrI GCNGC 4 cut(s) 213, 480, 483, 522
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 316
Psp1406I AACGTT 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 382
PsuI RGATCY 2 cut(s) 393, 449
RseI CAYNNNNRTG 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 4 cut(s) 212, 479, 482, 521
Sau3AI GATC 7 cut(s) 219, 306, 352, 387, 393, 436, 449
SchI GAGTC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 3 cut(s) 29, 290, 547
SseBI AGGCCT 1 cut(s) 127
SspMI CTAG 2 cut(s) 137, 428
StuI AGGCCT 1 cut(s) 127
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 2 cut(s) 318, 351
TaqI TCGA 4 cut(s) 72, 84, 309, 390
TaqII GACCGA 1 cut(s) 58
TasI AATT 3 cut(s) 29, 290, 547
TfiI GAWTC 2 cut(s) 43, 342
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 60, 266
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 4 cut(s) 211, 478, 481, 520
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 17, 170, 575
TspRI CASTG 2 cut(s) 60, 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XspI CTAG 2 cut(s) 137, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.