Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Forward (+)

2438014 .. 2440968

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCAAAAATGGAGAAGGGGAAGGTGGAGAAACCAAATGCGAAAGAGAGAAGCAAACACGAAGAAGAAGAACTTCCTCTAATGGCGTTGAACCACGTGTCGAGGCTGTGTAGAAATGTGGAGGAGTCGGTGGATTTCTACACCAAAGTTTTGGGGTTCGTTAAGATTGAGAGGCCGCCAGCTTTCGACTTTGATGGTGCTTGGCTGTTTAATTATGGAATTGGGATTCACTTGGTGCAGTCAGAGGATGAGGAGAGGCTTCCTGCGGATACTGATCGCTTGGATCCCGTGGACAACCACATCTCATTCCAGTGTGAAGACATGGAAGCAATAGAGCAGAAGCTGAAGGACCTGAATATAAAGTACATTAAAAGATCAGTGGAGGATGATGAAAATAAAACAACAATTGACCAGCTCTTCTTCAATGACCCAGATGGATTCATGATTGAGATGTGCAATTGTGAGAATATCAAGCTTGTTCCTGCAGGTCCCTTGGGGAACATAAAGCTACCAGTTGATAGGCATACTCCTCCTGTTGATCTCAACCAGAATGGCAAGGATGCTAATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

191

Amino Acids

21.83

Weight (kDa)

4.84

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AciI	CCGC	2 cut(s)	176, 266
AclWI	GGATC	2 cut(s)	278, 291
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	97
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	91, 424
AluBI	AGCT	5 cut(s)	182, 343, 415, 475, 508
AluI	AGCT	5 cut(s)	182, 343, 415, 475, 508
AlwI	GGATC	2 cut(s)	278, 291
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	349, 488
AvaII	GGWCC	2 cut(s)	349, 488
BamHI	GGATCC	1 cut(s)	283
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	324
BccI	CCATC	2 cut(s)	188, 428
BciVI	GTATCC	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	2 cut(s)	349, 488
BmgT120I	GGNCC	2 cut(s)	349, 488
BmiI	GGNNCC	2 cut(s)	285, 490
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	288, 492
Bse1I	ACTGG	2 cut(s)	310, 512
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	288, 492
BseGI	GGATG	3 cut(s)	253, 391, 565
BseJI	GATNNNNATC	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	310, 512
BseRI	GAGGAG	3 cut(s)	137, 266, 519
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	274, 283, 374, 538
BspACI	CCGC	2 cut(s)	176, 266
BspANI	GGCC	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	285, 490
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	278, 291
BspQI	GCTCTTC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	310, 512
BssECI	CCNNGG	2 cut(s)	288, 492
BssMI	GATC	4 cut(s)	274, 283, 374, 538
BssT1I	CCWWGG	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	253, 391, 565
BstKTI	GATC	4 cut(s)	277, 286, 377, 541
BstMBI	GATC	4 cut(s)	274, 283, 374, 538
BstSFI	CTRYAG	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	253, 391, 565
BtsIMutI	CAGTG	2 cut(s)	317, 384
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	343
CciI	TCATGA	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	349, 488
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	322, 442
CviJI	RGCY	9 cut(s)	106, 175, 182, 205, 259, 343, 415, 475, 508
CviKI_1	RGCY	9 cut(s)	106, 175, 182, 205, 259, 343, 415, 475, 508
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	4 cut(s)	276, 285, 376, 540
DpnII	GATC	4 cut(s)	274, 283, 374, 538
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	349, 488
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	349, 488
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	325, 445
FaiI	YATR	6 cut(s)	216, 323, 359, 443, 503, 525
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	2 cut(s)	321, 441
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	2 cut(s)	260, 398
Fsp4HI	GCNGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	325, 445
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	3 cut(s)	125, 226, 438
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	3 cut(s)	10, 16, 340
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	238, 456, 485
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	325, 445
Kzo9I	GATC	4 cut(s)	274, 283, 374, 538
LguI	GCTCTTC	1 cut(s)	422
LweI	GCATC	1 cut(s)	550
MaeII	ACGT	1 cut(s)	96
MalI	GATC	4 cut(s)	276, 285, 376, 540
MboI	GATC	4 cut(s)	274, 283, 374, 538
MboII	GAAGA	6 cut(s)	74, 77, 80, 329, 409, 412
MfeI	CAATTG	2 cut(s)	405, 457
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	4 cut(s)	211, 219, 405, 457
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	9 cut(s)	87, 96, 115, 165, 238, 244, 249, 376, 540
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	162, 210, 369
MslI	CAYNNNNRTG	1 cut(s)	310
MunI	CAATTG	2 cut(s)	405, 457
NdeII	GATC	4 cut(s)	274, 283, 374, 538
NlaIII	CATG	2 cut(s)	325, 445
NlaIV	GGNNCC	2 cut(s)	285, 490
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	226, 438
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	97
PpuMI	RGGWCCY	2 cut(s)	349, 488
Psp5II	RGGWCCY	2 cut(s)	349, 488
PspCI	CACGTG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	285, 490
PspPI	GGNCC	2 cut(s)	349, 488
PspPPI	RGGWCCY	2 cut(s)	349, 488
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	162, 210, 369
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	4 cut(s)	274, 283, 374, 538
Sau96I	GGNCC	2 cut(s)	349, 488
SbfI	CCTGCAGG	1 cut(s)	487
SchI	GAGTC	1 cut(s)	134
SdaI	CCTGCAGG	1 cut(s)	487
SetI	ASST	9 cut(s)	27, 99, 184, 345, 354, 417, 477, 490, 510
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	349, 488
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse8387I	CCTGCAGG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	211, 219, 405, 457
SsiI	CCGC	2 cut(s)	176, 266
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	101, 186
TasI	AATT	4 cut(s)	211, 219, 405, 457
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	226, 438
Tru1I	TTAA	3 cut(s)	162, 210, 369
Tru9I	TTAA	3 cut(s)	162, 210, 369
TscAI	CASTG	2 cut(s)	317, 384
TspDTI	ATGAA	2 cut(s)	405, 430
TspRI	CASTG	2 cut(s)	317, 384
VpaK11BI	GGWCC	2 cut(s)	349, 488
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.