Rmu_sc0013928.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013928.1
OG0003747
Physical Location & Seq
Forward (+)
7944 .. 9554
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013928.1_g000002.1.cds

Sequence Viewer

Length: 537 bp
atgggcaagagaagaagagatcaaaaggaagaccaacacaaagaaaaagatcatgaaagaaaagatcaaaaggaagagcaccaacttcctctgatggctttgatgccaaacaattttgacaccaaagtgttggggtttgtcgattggcttttgattgagaggccaccggcttttgattgtgtcaatcaccgggattcacttgcttcgacttgggattcaggttgggacggtaggtgcagatcgaaaactcggattcagggtatggaattccagaaaataccttcctcctcaaatggaatcttttccaactctgtcactggggtcgtttgcattaaagaatttgggttagttggaggtactgtcgggtcaaagaaacattggggatcagcaagaggatctgatgtggcgaggttatacggggggtttctttcaggtcaatcgttgacgcaggtcgtgaactctacaacggcggagacgttttgtgaggcagttctgaagatggtgactacagaattgacgtgggtggctgcagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.91

Weight (kDa)

8.36

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AciI CCGC 1 cut(s) 470
AclWI GGATC 2 cut(s) 391, 403
AcsI RAATTY 2 cut(s) 266, 338
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 358
AjiI CACGTC 1 cut(s) 519
AleI CACNNNNGTG 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 2 cut(s) 391, 403
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 2 cut(s) 266, 338
Asp700I GAANNNNTTC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 179, 514
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 88, 493
BceAI ACGGC 1 cut(s) 483
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 467
BfmI CTRYAG 2 cut(s) 507, 528
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 327
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 256
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 167, 190
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 467
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 6 cut(s) 19, 49, 64, 239, 383, 395
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 163
BspHI TCATGA 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 2 cut(s) 391, 403
BspQI GCTCTTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 166
BssMI GATC 6 cut(s) 19, 49, 64, 239, 383, 395
Bst4CI ACNGT 2 cut(s) 230, 361
Bst6I CTCTTC 2 cut(s) 10, 69
BstKTI GATC 6 cut(s) 22, 52, 67, 242, 386, 398
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 6 cut(s) 19, 49, 64, 239, 383, 395
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 507, 528
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 1 cut(s) 163
BtrI CACGTC 1 cut(s) 519
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 315, 537
BveI ACCTGC 1 cut(s) 439
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 166
CseI GACGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 357
CviAII CATG 1 cut(s) 53
CviJI RGCY 5 cut(s) 98, 148, 163, 170, 527
CviKI_1 RGCY 5 cut(s) 98, 148, 163, 170, 527
CviQI GTAC 1 cut(s) 357
DpnI GATC 6 cut(s) 21, 51, 66, 241, 385, 397
DpnII GATC 6 cut(s) 19, 49, 64, 239, 383, 395
Eam1104I CTCTTC 2 cut(s) 10, 69
EarI CTCTTC 2 cut(s) 10, 69
EciI GGCGGA 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 263, 415
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 528
Fsp4HI GCNGC 1 cut(s) 528
GluI GCNGC 1 cut(s) 528
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 167, 190
HgaI GACGC 1 cut(s) 454
Hin1II CATG 1 cut(s) 56
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 4 cut(s) 194, 215, 253, 297
HpaII CCGG 2 cut(s) 167, 190
HphI GGTGA 2 cut(s) 179, 514
Hpy166II GTNNAC 2 cut(s) 444, 457
Hpy188I TCNGA 4 cut(s) 93, 252, 400, 495
Hpy188III TCNNGA 3 cut(s) 53, 271, 454
Hpy8I GTNNAC 2 cut(s) 444, 457
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 230, 361
HpyCH4IV ACGT 2 cut(s) 476, 518
HpyCH4V TGCA 3 cut(s) 237, 330, 530
HpySE526I ACGT 2 cut(s) 476, 518
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 6 cut(s) 19, 49, 64, 239, 383, 395
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 8 cut(s) 180, 203, 204, 242, 284, 303, 417, 434
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 93
MaeII ACGT 2 cut(s) 476, 518
MaeIII GTNAC 2 cut(s) 313, 502
MalI GATC 6 cut(s) 21, 51, 66, 241, 385, 397
MboI GATC 6 cut(s) 19, 49, 64, 239, 383, 395
MboII GAAGA 5 cut(s) 24, 27, 41, 86, 508
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 112, 266, 338, 512
MmeI TCCRAC 2 cut(s) 330, 331
MnlI CCTC 8 cut(s) 99, 153, 295, 298, 347, 386, 402, 478
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 2 cut(s) 167, 190
MspR9I CCNGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 191
NdeII GATC 6 cut(s) 19, 49, 64, 239, 383, 395
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 313, 502
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 194, 215, 253, 297
PkrI GCNGC 1 cut(s) 529
PshAI GACNNNNGTC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 6 cut(s) 19, 49, 64, 239, 383, 395
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 223, 236, 283, 358, 413, 436, 453, 479, 521
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 2 cut(s) 507, 528
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 4 cut(s) 112, 266, 338, 512
SsiI CCGC 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 230, 361
TaiI ACGT 2 cut(s) 479, 521
TaqI TCGA 3 cut(s) 141, 206, 242
TasI AATT 4 cut(s) 112, 266, 338, 512
TfiI GAWTC 4 cut(s) 194, 215, 253, 297
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 322, 537
TseFI GTSAC 2 cut(s) 313, 502
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 2 cut(s) 313, 502
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 322, 537
XapI RAATTY 2 cut(s) 266, 338
XmnI GAANNNNTTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.