Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Reverse (-)

62436770 .. 62437690

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTCAGATGCAGCAGATGAAGGAAGAAGAATCTAATGGGCAAGAGAAGAAGTTATCTACCAATGAGGAAAACCAACACAAAGAAAAGGATCATGAAAGGAAAGATCAAAAGGAAGAGCACAGACTTCCTCTAATGGCCTTGAATCATGTATTGAGGCTTTGTAGGAATGTGGAGGAGTCGGTAGATTTCTACACCGAAATGTTGGGGTTTGTCAAGATTGAGAGGCCACCGGCTTTTGATTTCGACGGTGCTTGGCTGTTTAACTATGGTCTATGGAGTTGGGATTCACTTGGTGCATGTGAGGACATGGATGCAATGGTGAAGAAATTGGAGGAGCTAAACATAGAGTACGTGAAGAGGACAGTGGAAGATGATAAAAATGGGACAAAAATTGATCAAATATTCTTCAATGACCCAGATGGATTCATGATTGAGATATGCAATTGTGAGAATCTCAAGCTTGTTCCTGCAGATTCCTTGGGCAAAATAAAGCTGCCAATCGATAGGCATAATCCTCCTGTGGGATATGGGTATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

180

Amino Acids

21.06

Weight (kDa)

4.83

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	2 cut(s)	145, 412
AluBI	AGCT	3 cut(s)	340, 463, 496
AluI	AGCT	3 cut(s)	340, 463, 496
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	138, 227
ApeKI	GCWGC	2 cut(s)	13, 496
AsuHPI	GGTGA	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	25, 483
BccI	CCATC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	14, 497
BlsI	GCNGC	2 cut(s)	15, 498
BmsI	GCATC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse118I	RCCGGY	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	191, 350
BseXI	GCAGC	2 cut(s)	25, 483
BshFI	GGCC	2 cut(s)	140, 229
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	140, 229
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	91, 106, 397
BspANI	GGCC	2 cut(s)	140, 229
BspCNI	CTCAG	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	504
BspHI	TCATGA	2 cut(s)	94, 429
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	91, 106, 397
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	251, 367
Bst6I	CTCTTC	2 cut(s)	111, 353
BstBAI	YACGTR	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	94, 109, 400
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	91, 106, 397
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	25, 483
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	140, 229
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	372
CciI	TCATGA	2 cut(s)	94, 429
Cfr10I	RCCGGY	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	5 cut(s)	95, 149, 300, 310, 430
CviJI	RGCY	8 cut(s)	140, 160, 229, 236, 259, 340, 463, 496
CviKI_1	RGCY	8 cut(s)	140, 160, 229, 236, 259, 340, 463, 496
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	93, 108, 399
DpnII	GATC	3 cut(s)	91, 106, 397
DraIII	CACNNNGTG	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	111, 353
EarI	CTCTTC	2 cut(s)	111, 353
Eco130I	CCWWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	5 cut(s)	98, 152, 303, 313, 433
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	5 cut(s)	94, 148, 299, 309, 429
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	14, 497
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	14, 497
GluI	GCNGC	2 cut(s)	14, 497
HaeIII	GGCC	2 cut(s)	140, 229
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	5 cut(s)	98, 152, 303, 313, 433
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	7 cut(s)	32, 145, 179, 287, 426, 454, 476
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	95, 217, 430
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	251, 367
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	13, 299, 317, 444, 473
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	98, 152, 303, 313, 433
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	91, 106, 397
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	4 cut(s)	246, 432, 483, 534
Lsp1109I	GCAGC	2 cut(s)	25, 483
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	354
MalI	GATC	3 cut(s)	93, 108, 399
MboI	GATC	3 cut(s)	91, 106, 397
MboII	GAAGA	8 cut(s)	38, 41, 61, 128, 337, 370, 383, 400
MfeI	CAATTG	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	329, 393, 445
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	9 cut(s)	61, 141, 150, 169, 219, 298, 328, 354, 528
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	445
NdeII	GATC	3 cut(s)	91, 106, 397
NlaIII	CATG	5 cut(s)	98, 152, 303, 313, 433
NspI	RCATGY	1 cut(s)	303
PagI	TCATGA	2 cut(s)	94, 429
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	6 cut(s)	32, 145, 287, 426, 454, 476
PkrI	GCNGC	2 cut(s)	15, 498
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	14, 497
Sau3AI	GATC	3 cut(s)	91, 106, 397
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	4 cut(s)	342, 357, 465, 498
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	329, 393, 445
SspI	AATATT	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	251, 367
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	246, 504
TasI	AATT	3 cut(s)	329, 393, 445
TfiI	GAWTC	6 cut(s)	32, 145, 287, 426, 454, 476
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	2 cut(s)	13, 496
TspDTI	ATGAA	3 cut(s)	35, 111, 418
TspRI	CASTG	1 cut(s)	372
XceI	RCATGY	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.