Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Forward (+)

6359857 .. 6360508

Gene Structure 652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTGGGGTTTGTCAAGATTGAGAGGCCACCGGCTTTTGATTTCGACAGCGCTTGGCTGTTTAACTATGGAGTTGGGATTCACTTGGTGCAGTCCAAGGATAAGGATAGGCTCCCTGATCAAGATCATTTGGATCCCATGGACAACCACATCTCATTTCAATGTGAGGACATGGATGCAATGGTGAAGAAATTGGAGGAGCTAAACATAGAGTACATGAAGAGGACTGTGGAGGATGATAAAAATGGGACAAAAATTGATCAAATCTTCTTCATTGACCTAGATGGATTCATGATTGAGATATGCAATTGTGAGAATCTCAAGCTTGTTCCTGCAGGTTCCTTGGGCAAAATAAAGCTGCCAATTGATAGGCATATTCCTCTTGTGGATATGGGTGACAATGGTACTGATGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

139

Amino Acids

15.9

Weight (kDa)

4.63

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AclWI	GGATC	2 cut(s)	128, 141
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	215, 406
AfeI	AGCGCT	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	3 cut(s)	202, 325, 358
AluI	AGCT	3 cut(s)	202, 325, 358
AlwI	GGATC	2 cut(s)	128, 141
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	196, 407
BamHI	GGATCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	2 cut(s)	118, 259
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmiI	GGNNCC	3 cut(s)	113, 135, 340
BmsI	GCATC	2 cut(s)	166, 400
BpuEI	CTTGAG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	96, 138, 342
Bse118I	RCCGGY	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	96, 138, 342
BseGI	GGATG	2 cut(s)	181, 241
BseJI	GATNNNNATC	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	118, 124, 133, 259
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	113, 135, 340
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	128, 141
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	96, 138, 342
BssMI	GATC	4 cut(s)	118, 124, 133, 259
BssT1I	CCWWGG	3 cut(s)	96, 138, 342
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	181, 241
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	121, 127, 136, 262
BstMBI	GATC	4 cut(s)	118, 124, 133, 259
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	181, 241
BveI	ACCTGC	1 cut(s)	326
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	214, 405
CviAII	CATG	4 cut(s)	139, 172, 217, 292
CviJI	RGCY	7 cut(s)	28, 35, 58, 112, 202, 325, 358
CviKI_1	RGCY	7 cut(s)	28, 35, 58, 112, 202, 325, 358
CviQI	GTAC	2 cut(s)	214, 405
DpnI	GATC	4 cut(s)	120, 126, 135, 261
DpnII	GATC	4 cut(s)	118, 124, 133, 259
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	3 cut(s)	96, 138, 342
Eco47III	AGCGCT	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	96, 138, 342
ErhI	CCWWGG	3 cut(s)	96, 138, 342
FaeI	CATG	4 cut(s)	142, 175, 220, 295
FaiI	YATR	9 cut(s)	69, 140, 173, 209, 218, 293, 304, 375, 392
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	138, 171, 216, 291
FbaI	TGATCA	2 cut(s)	118, 259
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	2 cut(s)	188, 248
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	142, 175, 220, 295
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	79, 288, 316
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	196, 407
Hpy188III	TCNNGA	3 cut(s)	16, 122, 292
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	91, 179, 306, 335
Hsp92II	CATG	4 cut(s)	142, 175, 220, 295
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	2 cut(s)	118, 259
Kzo9I	GATC	4 cut(s)	118, 124, 133, 259
LmnI	GCTCC	2 cut(s)	117, 199
LpnPI	CCDG	4 cut(s)	45, 129, 321, 345
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	166, 400
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	120, 126, 135, 261
MboI	GATC	4 cut(s)	118, 124, 133, 259
MboII	GAAGA	4 cut(s)	199, 232, 259, 262
MfeI	CAATTG	2 cut(s)	307, 363
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	4 cut(s)	191, 255, 307, 363
MnlI	CCTC	6 cut(s)	18, 160, 190, 216, 226, 390
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	2 cut(s)	307, 363
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	118, 124, 133, 259
NlaIII	CATG	4 cut(s)	142, 175, 220, 295
NlaIV	GGNNCC	3 cut(s)	113, 135, 340
NmuCI	GTSAC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	79, 288, 316
PkrI	GCNGC	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	113, 135, 340
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	215, 406
RsaNI	GTAC	2 cut(s)	214, 405
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	4 cut(s)	118, 124, 133, 259
SbfI	CCTGCAGG	1 cut(s)	337
SdaI	CCTGCAGG	1 cut(s)	337
SetI	ASST	5 cut(s)	204, 282, 327, 340, 360
SfaNI	GCATC	2 cut(s)	166, 400
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse8387I	CCTGCAGG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	191, 255, 307, 363
SspMI	CTAG	1 cut(s)	281
StyI	CCWWGG	3 cut(s)	96, 138, 342
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	45
TasI	AATT	4 cut(s)	191, 255, 307, 363
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	79, 288, 316
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	3 cut(s)	233, 262, 280
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.