Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Reverse (-)

18687170 .. 18692907

Gene Structure 5738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G193600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGAAAGAAAGCATGCTGAATTTGAAGTCCTTGAATCACATCTCATTGGTGTGCAGATCAGTTGAGAAATCCCTTGATTTCTACCAGAGTGTTCTTGGGTTCTTCCCCATTAGGAGGCCTGGCTCCTTTGACTTTATTGGTGCATGGCTATTCAATTATGGCATTGGCATACATCTTCTCCAATCTGAAGACCCTGATAAAATGCCCAAGAAGATCACCCAGATTAAACCCAAGGATAACCACATTTCTTTCCAGTGTGAGAGCATGGTCACAGTGGAGAAAAATTTGAAGGAGATGGAGATAGAGTACGTGAAGCGCAGGGTGGAGAAGGGTGGAATCTACGTTGATCAGCTTTTCTTCCACGACCCTGATGCCACTATGATTGAGATCTGTAATTGTGATAACCTTCCCGTAATACCCCTCACGGGAGAGCCAGTCAGGCCCTGCAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

PPR_2

Protein Analysis

153

Amino Acids

17.5

Weight (kDa)

6.08

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	22, 286
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	117, 428
AgsI	TTSAA	4 cut(s)	28, 37, 157, 292
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	447
AoxI	GGCC	2 cut(s)	119, 443
ApoI	RAATTY	2 cut(s)	22, 286
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 293, 323, 423, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 428
Bse1I	ACTGG	2 cut(s)	256, 437
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	117, 428
BseMI	GCAATG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	256, 437
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	121, 445
BslI	CCNNNNNNNGG	2 cut(s)	117, 428
BsnI	GGCC	2 cut(s)	121, 445
Bsp143I	GATC	4 cut(s)	59, 216, 349, 390
BspANI	GGCC	2 cut(s)	121, 445
BspLI	GGNNCC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	256, 437
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	4 cut(s)	59, 216, 349, 390
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	62, 219, 352, 393
BstMBI	GATC	4 cut(s)	59, 216, 349, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	121, 445
BtsIMutI	CAGTG	2 cut(s)	263, 282
Cac8I	GCNNGC	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	447
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	3 cut(s)	16, 147, 268
CviJI	RGCY	6 cut(s)	121, 126, 151, 355, 436, 445
CviKI_1	RGCY	6 cut(s)	121, 126, 151, 355, 436, 445
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	4 cut(s)	61, 218, 351, 392
DpnII	GATC	4 cut(s)	59, 216, 349, 390
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	19, 150, 271
FaiI	YATR	6 cut(s)	17, 148, 162, 173, 269, 383
FatI	CATG	3 cut(s)	15, 146, 267
FbaI	TGATCA	1 cut(s)	349
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	121, 445
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	19, 150, 271
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	37, 339
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	286, 325, 419
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	312, 345
HpyCH4V	TGCA	3 cut(s)	57, 146, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpySE526I	ACGT	2 cut(s)	312, 345
Hsp92II	CATG	3 cut(s)	19, 150, 271
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	59, 216, 349, 390
LmnI	GCTCC	1 cut(s)	131
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	2 cut(s)	312, 345
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	61, 218, 351, 392
MboI	GATC	4 cut(s)	59, 216, 349, 390
MboII	GAAGA	5 cut(s)	97, 170, 203, 226, 352
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	4 cut(s)	22, 157, 286, 397
MnlI	CCTC	2 cut(s)	111, 434
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeII	GATC	4 cut(s)	59, 216, 349, 390
NlaIII	CATG	3 cut(s)	19, 150, 271
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	19
PaeI	GCATGC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	37, 339
Ppu21I	YACGTR	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	59, 216, 349, 390
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	315, 348, 357, 411
SfaNI	GCATC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	4 cut(s)	22, 157, 286, 397
SseBI	AGGCCT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	315, 348
TasI	AATT	4 cut(s)	22, 157, 286, 397
TfiI	GAWTC	2 cut(s)	37, 339
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	263, 282
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	263, 282
XapI	RAATTY	2 cut(s)	22, 286
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.