Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003747

Physical Location & Seq

Genomic Coordinates Reverse (-)

3244547 .. 3245507

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAAATCCTCTGCAATTGAAGTCCTTGAATCACATCTCACTGGTTTCCAGGTCGGTCGAGAAATCCATCGATTTCTACCAGAATGTTCTTGGCTTCTTTCCCATTAGGAGGCCTGACTCCCTAGATTTCAATGGTGCATGGTTATTCAACTATGGCATTGGCATTCATCTCCTTCAAGCTGAAGACCCCGAGAAGCTGCCTAAGATCAGTCAGATTAACCCCAAAGATAACCACATTTCTTTCCAGTGTGAGAGCATGGTCAGAGTGGAGAACAAATTGAAGGAGATGGAGATCGAATACGTGTGGAGCAGGGTAGAGGAAGGAGGAATCAACGTTGATCAGCTCTTCTTCCATGACCCAGATGGCACCATGATCGAGATCTGCAACTGTGACAACCTCCCTGTGATACCTCTAGTTGGAGATCAACCTCTCAGATCTTGCACAGGTGTGAAATGCAAAGTGCAGCAGCAACAGCAAGAAGCAATAGCCCAGATGAAACCTCAGCAGCAAACCATGACCTGCCTGCGTTCTAATTCTATACACATGAACGACCACTATCTTCCTTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

191

Amino Acids

21.85

Weight (kDa)

5.47

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	10 - 128	1.1e-11	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_2	PF12681	13 - 130	8e-06	Glyoxalase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28420
fragaria_vesca	FvH4_1g03551 FvH4_7g01840
malus_domestica	MD00G1106800.v1.1 MD02G1300100.v1.1 MD07G1024800.v1.1
prunus_persica	Prupe.2G024500_v2.0.a1 Prupe.7G240200_v2.0.a1 Prupe.7G241600_v2.0.a1 Prupe.8G193600_v2.0.a1 Prupe.8G193600_v2.0.a1
pyrus_communis	pycom15g15720
rosa_chinensis	RchiOBHm_Chr1g0318471 RchiOBHm_Chr2g0089061
rosa_laevigata	RLG00000015988 RLG00000030535
rosa_multiflora	Rmu_sc0004803.1_g000006 Rmu_sc0005510.1_g000006 Rmu_sc0013928.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152290 Rroxscaffold_4G00329200
rosa_rugosa	Rorug01G0021500 Rorug01G0487200
rosa_samantha	Rh1AG033700 Rh1BG029800 Rh1BG226100 Rh1CG033300 Rh1DG037200 Rh1DG253800 Rh2AG042600 Rh2BG041100 Rh2CG042700 Rh2DG041700
rosa_wichuraiana	Rw2G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	368
AclI	AACGTT	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	111, 419
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	6 cut(s)	22, 31, 133, 151, 179, 283
AjnI	CCWGG	1 cut(s)	50
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	182, 199, 346
AluI	AGCT	3 cut(s)	182, 199, 346
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	199, 466, 469, 508
AvaI	CYCGRG	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	186, 478, 481, 520
BccI	CCATC	3 cut(s)	77, 283, 359
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	2 cut(s)	125, 416
BfuAI	ACCTGC	1 cut(s)	530
BglII	AGATCT	2 cut(s)	381, 437
BisI	GCNGC	4 cut(s)	200, 467, 470, 509
BlsI	GCNGC	4 cut(s)	201, 468, 471, 510
Bme1390I	CCNGG	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	304
BsaBI	GATNNNNATC	2 cut(s)	293, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 419
Bse1I	ACTGG	2 cut(s)	48, 247
Bse8I	GATNNNNATC	2 cut(s)	293, 380
BseBI	CCWGG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	72
BseJI	GATNNNNATC	2 cut(s)	293, 380
BseLI	CCNNNNNNNGG	2 cut(s)	111, 419
BseMII	CTCAG	2 cut(s)	448, 518
BseNI	ACTGG	2 cut(s)	48, 247
BseXI	GCAGC	4 cut(s)	186, 478, 481, 520
BsgI	GTGCAG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	111, 419
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	447, 517
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	48, 247
BssMI	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	204, 434, 504
BstKTI	GATC	7 cut(s)	210, 297, 343, 378, 384, 427, 440
BstMBI	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	4 cut(s)	186, 478, 481, 520
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	381, 437
BstYI	RGATCY	2 cut(s)	381, 437
Bsu15I	ATCGAT	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	41, 254
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	72
CviAII	CATG	6 cut(s)	141, 259, 356, 373, 517, 547
CviJI	RGCY	6 cut(s)	96, 115, 182, 199, 346, 491
CviKI_1	RGCY	6 cut(s)	96, 115, 182, 199, 346, 491
DdeI	CTNAG	3 cut(s)	204, 434, 504
DpnI	GATC	7 cut(s)	209, 296, 342, 377, 383, 426, 439
DpnII	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	6 cut(s)	144, 262, 359, 376, 520, 550
FaiI	YATR	8 cut(s)	142, 156, 260, 357, 374, 518, 542, 548
FatI	CATG	6 cut(s)	140, 258, 355, 372, 516, 546
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	200, 467, 470, 509
Fsp4HI	GCNGC	4 cut(s)	200, 467, 470, 509
FspBI	CTAG	2 cut(s)	125, 416
GluI	GCNGC	4 cut(s)	200, 467, 470, 509
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	144, 262, 359, 376, 520, 550
HinfI	GANTC	3 cut(s)	31, 119, 330
Hpy188I	TCNGA	3 cut(s)	216, 266, 437
Hpy188III	TCNNGA	2 cut(s)	61, 379
HpyAV	CCTTC	3 cut(s)	185, 277, 317
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	303, 336
HpyCH4V	TGCA	6 cut(s)	16, 140, 387, 444, 459, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	3 cut(s)	204, 434, 504
HpySE526I	ACGT	2 cut(s)	303, 336
Hsp92II	CATG	6 cut(s)	144, 262, 359, 376, 520, 550
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	4 cut(s)	186, 478, 481, 520
MaeI	CTAG	2 cut(s)	125, 416
MaeII	ACGT	2 cut(s)	303, 336
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	7 cut(s)	209, 296, 342, 377, 383, 426, 439
MboI	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
MboII	GAAGA	4 cut(s)	197, 340, 343, 554
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	2 cut(s)	381, 437
MluCI	AATT	3 cut(s)	17, 278, 535
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	21, 105, 313, 320, 410, 423, 441, 513
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	475
NdeII	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
NlaIII	CATG	6 cut(s)	144, 262, 359, 376, 520, 550
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	31, 330
PkrI	GCNGC	4 cut(s)	201, 468, 471, 510
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	381, 437
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	200, 467, 470, 509
Sau3AI	GATC	7 cut(s)	207, 294, 340, 375, 381, 424, 437
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	17, 278, 535
SseBI	AGGCCT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	125, 416
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	2 cut(s)	306, 339
TaqI	TCGA	4 cut(s)	60, 72, 297, 378
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	3 cut(s)	17, 278, 535
TfiI	GAWTC	2 cut(s)	31, 330
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	48, 254
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	4 cut(s)	199, 466, 469, 508
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	158, 512, 563
TspRI	CASTG	2 cut(s)	48, 254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	89, 362
XspI	CTAG	2 cut(s)	125, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.