Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

19734625 .. 19736155

Gene Structure 1531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1135400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCCTGAGGTCGGTCTTATCTTTACCAGCAGTGCCTCGCCGGATACTTATTACCCAAATATGGGTTATGTAGAGCCTATCCCTATACATCTTCATGATTATACACAAGATGATCTGCATAAAATCTTCATGAGAAACCAGGCAAACAAAAAGCTTTACGCCTCTTTTCTCAGGGTCGAAAATAGTTGTTTTTCTTCTTTGCACTCATCTTTTGCCTTTTGTGTTTCTTCTGATGAACACTTTTTCTTTTTGGTTAGTGTCATGCTAAGGCCTTTCTGTAGAATTACCAGACGGGTGGATGAATTATCTCCTGCCTTTTCACCATTTTTCACAAAGTATTGTGAACCTATCACTGATCTGAATTTTGTTCCCAATAAAGAGACGAACCAAAGGCAGAAATCCCCTGAAGTTGAAGTTGAAGTTAAGGAGAGAAAAGGAAAGGGCGACACAAGGAAATTCGGAGATTGTGAAGTTGAACAATTAGATTTCCATATGCCTACTTCTGCCAAGCATCTTCTTATTTCAGCATTTCTTGCTTCAAGAAATCCAGCTACCCTTGATTCATCAATGCTTTCGGAAAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTACTTTTGAATCCTGGCTCATTCCCAATGGAAAGATTATTAGCCATATTTCAGTGCATTACATCTGTAGGGGAAAGTCCTCTTGACGAGGAGGAACAAGAATATGGTAGGTTAGGCATTCAAGATGGGAATGACGTGCTCATGTCTGATGTTCTTTTACTACTGTCCAGTCTCTGCAGTGTTAATTTTATTGTCACTGGTGGAAGCTGCCCACTGGAGGGCTCAACTCGATATCGATCTACAATGAGTGAAGATATGGCTCTTAAGGTAGCAAGGAGCATTAAGTTCCCTCTCTCAAAGTATATGTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

310

Amino Acids

35.13

Weight (kDa)

5.29

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC5_lid	PF21639	85 - 127	4.3e-07	ORC5, lid domain
ORC5_C	PF14630	165 - 307	2e-30	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	361, 455
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	5 cut(s)	11, 61, 62, 832, 833
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	6 cut(s)	413, 419, 476, 540, 625, 737
AjiI	CACGTC	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	138, 628
AluBI	AGCT	3 cut(s)	154, 551, 822
AluI	AGCT	3 cut(s)	154, 551, 822
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	2 cut(s)	374, 791
AlwNI	CAGNNNCTG	1 cut(s)	789
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	2 cut(s)	361, 455
AsuHPI	GGTGA	1 cut(s)	312
AxyI	CCTNAGG	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	1 cut(s)	734
BciT130I	CCWGG	2 cut(s)	140, 630
BciVI	GTATCC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	374, 791
BfmI	CTRYAG	4 cut(s)	277, 603, 681, 790
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	823
BlsI	GCNGC	1 cut(s)	824
Bme1390I	CCNGG	2 cut(s)	140, 630
BmgBI	CACGTC	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	140, 630
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	851
Bpu10I	CCTNAGC	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	850
BsaBI	GATNNNNATC	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 61, 62, 832, 833
Bse1I	ACTGG	3 cut(s)	783, 817, 834
Bse21I	CCTNAGG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	850
BseBI	CCWGG	2 cut(s)	140, 630
BseCI	ATCGAT	1 cut(s)	850
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	850
BseLI	CCNNNNNNNGG	5 cut(s)	11, 61, 62, 832, 833
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	3 cut(s)	783, 817, 834
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	809
BshFI	GGCC	1 cut(s)	271
BshVI	ATCGAT	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	5 cut(s)	11, 61, 62, 832, 833
BsmAI	GTCTC	2 cut(s)	374, 791
BsmBI	CGTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	756, 839
Bsp1407I	TGTACA	1 cut(s)	921
Bsp143I	GATC	3 cut(s)	112, 355, 851
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	850
BspHI	TCATGA	2 cut(s)	94, 129
BspMAI	CTGCAG	2 cut(s)	607, 794
BspTI	CTTAAG	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	921
BsrI	ACTGG	3 cut(s)	783, 817, 834
BssMI	GATC	3 cut(s)	112, 355, 851
Bst2UI	CCWGG	2 cut(s)	140, 630
Bst4CI	ACNGT	1 cut(s)	780
BstAFI	CTTAAG	1 cut(s)	878
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	921
BstDEI	CTNAG	3 cut(s)	6, 170, 266
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	115, 358, 854
BstMAI	GTCTC	2 cut(s)	374, 791
BstMBI	GATC	3 cut(s)	112, 355, 851
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	2 cut(s)	140, 630
BstSCI	CCNGG	2 cut(s)	138, 628
BstSFI	CTRYAG	4 cut(s)	277, 603, 681, 790
BstV1I	GCAGC	1 cut(s)	809
BstXI	CCANNNNNNTGG	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	850
Bsu36I	CCTNAGG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	850
BtrI	CACGTC	1 cut(s)	751
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	2 cut(s)	37, 799
BtsIMutI	CAGTG	6 cut(s)	37, 351, 674, 799, 810, 827
CaiI	CAGNNNCTG	1 cut(s)	789
CciI	TCATGA	2 cut(s)	94, 129
ClaI	ATCGAT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	4 cut(s)	95, 130, 262, 757
CviJI	RGCY	9 cut(s)	76, 154, 271, 551, 633, 659, 822, 837, 875
CviKI_1	RGCY	9 cut(s)	76, 154, 271, 551, 633, 659, 822, 837, 875
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	3 cut(s)	6, 170, 266
DpnI	GATC	3 cut(s)	114, 357, 853
DpnII	GATC	3 cut(s)	112, 355, 851
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	138, 628
EcoRV	GATATC	1 cut(s)	848
EcoT38I	GRGCYC	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	4 cut(s)	98, 133, 265, 760
FatI	CATG	4 cut(s)	94, 129, 261, 756
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	823
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	1 cut(s)	823
GluI	GCNGC	1 cut(s)	823
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	4 cut(s)	98, 133, 265, 760
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	560, 625
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	5 cut(s)	232, 360, 461, 577, 763
Hpy188III	TCNNGA	5 cut(s)	95, 130, 540, 698, 737
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	1 cut(s)	780
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	5 cut(s)	118, 202, 605, 672, 792
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	3 cut(s)	6, 170, 266
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	4 cut(s)	98, 133, 265, 760
Kzo9I	GATC	3 cut(s)	112, 355, 851
LmnI	GCTCC	1 cut(s)	891
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	3 cut(s)	114, 357, 853
MboI	GATC	3 cut(s)	112, 355, 851
MboII	GAAGA	6 cut(s)	83, 118, 186, 219, 506, 878
MhlI	GDGCHC	2 cut(s)	756, 839
MluCI	AATT	7 cut(s)	282, 302, 361, 455, 479, 614, 799
MnlI	CCTC	7 cut(s)	46, 172, 697, 700, 705, 826, 915
MseI	TTAA	4 cut(s)	423, 798, 879, 897
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	140, 630
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	140, 630
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	112, 355, 851
NlaIII	CATG	4 cut(s)	98, 133, 265, 760
NmuCI	GTSAC	1 cut(s)	808
PagI	TCATGA	2 cut(s)	94, 129
PceI	AGGCCT	1 cut(s)	271
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	560, 625
PkrI	GCNGC	1 cut(s)	824
Psp6I	CCWGG	2 cut(s)	138, 628
PspGI	CCWGG	2 cut(s)	138, 628
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstI	CTGCAG	2 cut(s)	607, 794
PstNI	CAGNNNCTG	1 cut(s)	789
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	423, 798, 879, 897
SatI	GCNGC	1 cut(s)	823
Sau3AI	GATC	3 cut(s)	112, 355, 851
ScrFI	CCNGG	2 cut(s)	140, 630
SduI	GDGCHC	2 cut(s)	756, 839
SetI	ASST	8 cut(s)	12, 156, 349, 553, 728, 753, 824, 885
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	4 cut(s)	277, 603, 681, 790
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
Sse9I	AATT	7 cut(s)	282, 302, 361, 455, 479, 614, 799
SseBI	AGGCCT	1 cut(s)	271
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	2 cut(s)	138, 628
TaaI	ACNGT	1 cut(s)	780
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	3 cut(s)	177, 844, 850
TasI	AATT	7 cut(s)	282, 302, 361, 455, 479, 614, 799
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	2 cut(s)	560, 625
Tru1I	TTAA	4 cut(s)	423, 798, 879, 897
Tru9I	TTAA	4 cut(s)	423, 798, 879, 897
TscAI	CASTG	6 cut(s)	37, 358, 674, 799, 817, 834
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	5 cut(s)	83, 118, 249, 315, 552
TspRI	CASTG	6 cut(s)	37, 358, 674, 799, 817, 834
Vha464I	CTTAAG	1 cut(s)	878
XapI	RAATTY	2 cut(s)	361, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.