Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

73622057 .. 73627974

Gene Structure 5918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGGCAGTCGCGGACTCGCCGATCAGAATTCAGACATGGTTAAGGAAGAAAGGCCACAAATTACAAGGAGAGCAACCAGATCCTCCGCTTTGGCTAAAAGTGTAGTTGAAGAAACAGATACAAGCAGTCAGCACCCAAATGATGCTTCTGCGAGTTCAGACATTATTAAAGAAGAAAGCCCACAAATGACAAGGAGAACAACCCGATCCTCCGTTTTGGCCAAATGTTCAGACAATGTAGTTGAAGAAACAGACGCAAATAGTCAGCAGCAGCCGACTGTAGATGACCTTGTGATTGGAGAAGGAGAGTCCTTTAGCTTCGATGATCTGGTGTCTAGTTTTCCTGGTAGAGAAAGTCAGATCAAAGAGCTTGTGCACCTTTTGGGTCCGCAGAACTCTCCCATGCTTCCTATATTTATATATGGAGGCTCTTCCACTGGAAAAACCAGTATTGTTCTACAAACATTTAGGCATCTTAAACGACCTTTTGTTTACTCAAGCTGCCTTACCTTTTATAATCCTCGAATCTTGTTTGAATCCATATTAAATCAATTGTTCCTTCACCGAAAGAAAGCAGAAAATGGTTATTCTAGTGCAAAGCACTGTGAAAGGCCATCTGATTTTGTGAATTTTCTTCGCGAAGCCTTGGTTAGCATTATTGGTAATCCTCAGGGACAAAAGTCAGGATTGAGTAGCAAAAGGTCAGGAAAGGCTAATGGAAATTTGATCTACTTGATTTTTGACAATTTGGAGCGTGTCAAAGGGTGGGACAAAGGTTCTACTGTGTTACCTTTGTTGTTTAATCTCTATGACACTCTGAAAATGCCCGAGGTCGGTCTTATCTACATCAGCAATACCTCACCGGATAGATATGACTCAAATATGGGTTATGTTGAGCCTAACCCTCTATATCTTCCTGATTATACAGATGCTGATCTTGGTCAAATCTTAATGAGACACCAAGCAAACAAAAAGCTTTATACCTCTTTTCTCAGTGTTGTACTAAGGCCTTTCAGTAGAATTACCAGACGAGTGGATGAATTGTCTAGTGCATTTTCACTATTATTCAGAAAATATTGTGAACCTATTACTGATCTTGGGGTTGTTCCCAATGAAGAAATGAAGAGAAAGTTGTTTAGTCAATTTCAGCCCCATATTGCTCCTGCACTGAATGAGATATTTAAGGTTTCAACTCAGCCTTCCGCTGAGGTTGAAGCTAGGGAGAGAAACCCAAAGGTTAGCACAAGGAAATCCGGAGGTTATGAAGTTGTTGACCAGTTAGATTTTCACATGTCTACCTCTGCCAAGTATCTTCTAATTTCAGCATTCCTTGCTTCAAGAAATCCAGCTACCCTTGATGCATCATTGTTCGATTCTACTGGAGGTTCTAATAATCGAAAACGAAAGAGGAAGGTCTCTGAGAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTACTCATGAAGGGCCCCGGAACATTCCCAATGGAGAGGTTACTAGCCATATTCCAGTGTATTACATCTGTGGTGGAAGATCCACTTGATGATGAGGAACAAGCGCAGGATGGGTTAGGGATTCAAGATGGGCATTGTGGGCTCATGTCTGATGTCCTCTTACAATTGACTAGTCTCTGTGGTGCAAATTTTATTGTCAAAGGAGGAAGCTGCCCACTGGAGGGCTCAACTCGCTATCGTTCTACAGTTAGTGAAGATATGGCCCTGCAGGTAGCAAGAAGCATTAAGTTTCCTCTCTCAAAGGTCAGATTGTGGAAAGCCTTGAAGGAGCTTAATCATATGATTCAGCACCAAATTACTCTATTTTACTGGAGCTCAGGGAGTCAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

617

Amino Acids

68.89

Weight (kDa)

7.16

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	114 - 256	1.1e-11	AAA ATPase domain
ORC5_lid	PF21639	327 - 380	1.5e-11	ORC5, lid domain
ORC5_C	PF14630	431 - 587	6e-37	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	1717
AccI	GTMKAC	1 cut(s)	1295
AccII	CGCG	2 cut(s)	12, 639
AccIII	TCCGGA	1 cut(s)	1253
AciI	CCGC	4 cut(s)	12, 87, 389, 1203
AclWI	GGATC	3 cut(s)	75, 201, 1532
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	4 cut(s)	28, 628, 721, 1645
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	3 cut(s)	833, 1678, 1679
AflIII	ACRYGT	1 cut(s)	1290
AgsI	TTSAA	8 cut(s)	110, 245, 536, 1191, 1214, 1338, 1583, 1783
AhlI	ACTAGT	1 cut(s)	1628
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	9 cut(s)	318, 370, 501, 976, 1217, 1349, 1668, 1789, 1833
AluI	AGCT	9 cut(s)	318, 370, 501, 976, 1217, 1349, 1668, 1789, 1833
Alw21I	GWGCWC	2 cut(s)	378, 1835
Alw26I	GTCTC	3 cut(s)	949, 1420, 1637
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	3 cut(s)	75, 201, 1532
AlwNI	CAGNNNCTG	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	827
Aor13HI	TCCGGA	1 cut(s)	1253
AoxI	GGCC	6 cut(s)	53, 219, 611, 1007, 1471, 1719
ApaI	GGGCCC	1 cut(s)	1475
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	268, 271, 501, 1668
ApoI	RAATTY	4 cut(s)	28, 628, 721, 1645
AspLEI	GCGC	1 cut(s)	1564
AspS9I	GGNCC	4 cut(s)	386, 1471, 1472, 1720
AsuC2I	CCSGG	1 cut(s)	1476
AsuHPI	GGTGA	2 cut(s)	554, 852
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	2 cut(s)	378, 1475
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	4 cut(s)	1475, 1602, 1685, 1835
Bbv12I	GWGCWC	2 cut(s)	378, 1835
BbvCI	CCTCAGC	1 cut(s)	1206
BbvI	GCAGC	4 cut(s)	280, 283, 488, 1655
BccI	CCATC	3 cut(s)	622, 1562, 1580
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	1476
BcoDI	GTCTC	3 cut(s)	949, 1420, 1637
BcuI	ACTAGT	1 cut(s)	1628
BfaI	CTAG	6 cut(s)	336, 591, 1047, 1218, 1502, 1629
BfmI	CTRYAG	4 cut(s)	279, 1446, 1701, 1724
BfuAI	ACCTGC	1 cut(s)	1717
BisI	GCNGC	4 cut(s)	269, 272, 502, 1669
BlsI	GCNGC	4 cut(s)	270, 273, 503, 1670
Bme1390I	CCNGG	2 cut(s)	345, 1476
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	4 cut(s)	386, 1471, 1472, 1720
BmiI	GGNNCC	3 cut(s)	387, 1473, 1474
BmrFI	CCNGG	2 cut(s)	345, 1476
BmsI	GCATC	5 cut(s)	133, 481, 919, 1348, 1370
BoxI	GACNNNNGTC	1 cut(s)	679
BpmI	CTGGAG	3 cut(s)	1401, 1697, 1849
Bpu10I	CCTNAGC	2 cut(s)	1206, 1834
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	1476
BsaBI	GATNNNNATC	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	1420
BsaJI	CCNNGG	3 cut(s)	645, 828, 1474
BsaWI	WCCGGW	2 cut(s)	862, 1253
Bsc4I	CCNNNNNNNGG	3 cut(s)	833, 1678, 1679
Bse1I	ACTGG	7 cut(s)	442, 447, 1276, 1384, 1513, 1680, 1832
Bse21I	CCTNAGG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	933
BseAI	TCCGGA	1 cut(s)	1253
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	645, 828, 1474
BseGI	GGATG	2 cut(s)	1042, 1573
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	3 cut(s)	833, 1678, 1679
BseMII	CTCAG	6 cut(s)	683, 1006, 1197, 1208, 1410, 1848
BseNI	ACTGG	7 cut(s)	442, 447, 1276, 1384, 1513, 1680, 1832
BseSI	GKGCMC	2 cut(s)	378, 1475
BseXI	GCAGC	4 cut(s)	280, 283, 488, 1655
BsgI	GTGCAG	1 cut(s)	1149
Bsh1236I	CGCG	2 cut(s)	12, 639
BshFI	GGCC	6 cut(s)	55, 221, 613, 1009, 1473, 1721
BsiHKAI	GWGCWC	2 cut(s)	378, 1835
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	863, 1254, 1476
BslFI	GGGAC	2 cut(s)	687, 782
BslI	CCNNNNNNNGG	3 cut(s)	833, 1678, 1679
BsmAI	GTCTC	3 cut(s)	949, 1420, 1637
BsmFI	GGGAC	2 cut(s)	687, 782
BsmI	GAATGC	1 cut(s)	1325
BsnI	GGCC	6 cut(s)	55, 221, 613, 1009, 1473, 1721
Bso31I	GGTCTC	1 cut(s)	1420
BsoBI	CYCGRG	1 cut(s)	827
Bsp120I	GGGCCC	1 cut(s)	1471
Bsp1286I	GDGCHC	5 cut(s)	378, 1475, 1602, 1685, 1835
Bsp13I	TCCGGA	1 cut(s)	1253
Bsp143I	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
Bsp68I	TCGCGA	1 cut(s)	639
BspACI	CCGC	4 cut(s)	12, 87, 389, 1203
BspANI	GGCC	6 cut(s)	55, 221, 613, 1009, 1473, 1721
BspCNI	CTCAG	6 cut(s)	682, 1005, 1198, 1207, 1411, 1847
BspEI	TCCGGA	1 cut(s)	1253
BspFNI	CGCG	2 cut(s)	12, 639
BspHI	TCATGA	1 cut(s)	1464
BspLI	GGNNCC	3 cut(s)	387, 1473, 1474
BspMAI	CTGCAG	2 cut(s)	1450, 1728
BspMI	ACCTGC	1 cut(s)	1717
BspPI	GGATC	3 cut(s)	75, 201, 1532
BspQI	GCTCTTC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	1420
BsrI	ACTGG	7 cut(s)	442, 447, 1276, 1384, 1513, 1680, 1832
BssECI	CCNNGG	3 cut(s)	645, 828, 1474
BssMI	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	280, 605, 784, 1705
Bst6I	CTCTTC	2 cut(s)	436, 1118
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstDEI	CTNAG	7 cut(s)	669, 992, 1004, 1194, 1206, 1419, 1834
BstF5I	GGATG	2 cut(s)	1042, 1573
BstFNI	CGCG	2 cut(s)	12, 639
BstHHI	GCGC	1 cut(s)	1564
BstKTI	GATC	9 cut(s)	25, 83, 209, 328, 363, 729, 937, 1096, 1540
BstMAI	GTCTC	3 cut(s)	949, 1420, 1637
BstMBI	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
BstMWI	GCNNNNNNNGC	3 cut(s)	1331, 1597, 1689
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	1294
BstPAI	GACNNNNGTC	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	343, 1474
BstSFI	CTRYAG	4 cut(s)	279, 1446, 1701, 1724
BstSLI	GKGCMC	2 cut(s)	378, 1475
BstUI	CGCG	2 cut(s)	12, 639
BstV1I	GCAGC	4 cut(s)	280, 283, 488, 1655
BstX2I	RGATCY	2 cut(s)	80, 1537
BstXI	CCANNNNNNTGG	1 cut(s)	1033
BstYI	RGATCY	2 cut(s)	80, 1537
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	6 cut(s)	55, 221, 613, 1009, 1473, 1721
BtsCI	GGATG	2 cut(s)	1042, 1573
BtsIMutI	CAGTG	6 cut(s)	435, 601, 1000, 1166, 1520, 1673
BtuMI	TCGCGA	1 cut(s)	639
BveI	ACCTGC	1 cut(s)	1717
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	1464
CfoI	GCGC	1 cut(s)	1564
Cfr13I	GGNCC	4 cut(s)	386, 1471, 1472, 1720
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	5 cut(s)	37, 403, 1291, 1465, 1603
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	7 cut(s)	669, 992, 1004, 1194, 1206, 1419, 1834
DpnI	GATC	9 cut(s)	24, 82, 208, 327, 362, 728, 936, 1095, 1539
DpnII	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	436, 1118
EarI	CTCTTC	2 cut(s)	436, 1118
Ecl136II	GAGCTC	1 cut(s)	1833
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	1009
Eco24I	GRGCYC	4 cut(s)	1475, 1602, 1685, 1835
Eco31I	GGTCTC	1 cut(s)	1420
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	1833
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	1833
EcoO109I	RGGNCCY	2 cut(s)	1471, 1472
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	1363
EcoT38I	GRGCYC	4 cut(s)	1475, 1602, 1685, 1835
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	5 cut(s)	40, 406, 1294, 1468, 1606
FalI	AAGNNNNNCTT	2 cut(s)	1527, 1559
FaqI	GGGAC	2 cut(s)	687, 782
FatI	CATG	5 cut(s)	36, 402, 1290, 1464, 1602
FauNDI	CATATG	1 cut(s)	1797
FblI	GTMKAC	1 cut(s)	1295
Fnu4HI	GCNGC	4 cut(s)	269, 272, 502, 1669
FokI	GGATG	2 cut(s)	1049, 1580
FriOI	GRGCYC	4 cut(s)	1475, 1602, 1685, 1835
Fsp4HI	GCNGC	4 cut(s)	269, 272, 502, 1669
FspBI	CTAG	6 cut(s)	336, 591, 1047, 1218, 1502, 1629
GlaI	GCGC	1 cut(s)	1563
GluI	GCNGC	4 cut(s)	269, 272, 502, 1669
GsuI	CTGGAG	3 cut(s)	1401, 1697, 1849
HaeIII	GGCC	6 cut(s)	55, 221, 613, 1009, 1473, 1721
HapII	CCGG	3 cut(s)	863, 1254, 1476
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	1564
Hin1II	CATG	5 cut(s)	40, 406, 1294, 1468, 1606
Hin6I	GCGC	1 cut(s)	1562
HinP1I	GCGC	1 cut(s)	1562
HincII	GTYRAC	1 cut(s)	1273
HindII	GTYRAC	1 cut(s)	1273
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	9 cut(s)	15, 308, 525, 536, 875, 1373, 1579, 1801, 1840
HpaII	CCGG	3 cut(s)	863, 1254, 1476
HphI	GGTGA	2 cut(s)	554, 852
Hpy166II	GTNNAC	5 cut(s)	376, 493, 1082, 1273, 1296
Hpy188III	TCNNGA	8 cut(s)	638, 684, 705, 917, 1254, 1338, 1465, 1583
Hpy8I	GTNNAC	5 cut(s)	376, 493, 1082, 1273, 1296
HpyAV	CCTTC	7 cut(s)	296, 569, 1209, 1405, 1432, 1462, 1777
HpyCH4III	ACNGT	4 cut(s)	280, 605, 784, 1705
HpyCH4V	TGCA	8 cut(s)	376, 596, 1052, 1166, 1361, 1448, 1643, 1726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1331, 1597, 1689
HpyF3I	CTNAG	7 cut(s)	669, 992, 1004, 1194, 1206, 1419, 1834
Hsp92II	CATG	5 cut(s)	40, 406, 1294, 1468, 1606
HspAI	GCGC	1 cut(s)	1562
Kpn2I	TCCGGA	1 cut(s)	1253
Kzo9I	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	4 cut(s)	751, 1165, 1786, 1830
Lsp1109I	GCAGC	4 cut(s)	280, 283, 488, 1655
LweI	GCATC	5 cut(s)	133, 481, 919, 1348, 1370
MaeI	CTAG	6 cut(s)	336, 591, 1047, 1218, 1502, 1629
MaeIII	GTNAC	2 cut(s)	786, 1497
MalI	GATC	9 cut(s)	24, 82, 208, 327, 362, 728, 936, 1095, 1539
MboI	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
MfeI	CAATTG	2 cut(s)	551, 1622
MflI	RGATCY	2 cut(s)	80, 1537
MhlI	GDGCHC	5 cut(s)	378, 1475, 1602, 1685, 1835
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	4 cut(s)	9, 317, 869, 1849
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	1363
MroI	TCCGGA	1 cut(s)	1253
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	9 cut(s)	42, 168, 477, 545, 801, 950, 1182, 1743, 1791
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	1205
MspI	CCGG	3 cut(s)	863, 1254, 1476
MspR9I	CCNGG	2 cut(s)	345, 1476
MunI	CAATTG	2 cut(s)	551, 1622
Mva1269I	GAATGC	1 cut(s)	1325
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	12, 639
MwoI	GCNNNNNNNGC	3 cut(s)	1331, 1597, 1689
NciI	CCSGG	1 cut(s)	1476
NdeI	CATATG	1 cut(s)	1797
NdeII	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
NlaIII	CATG	5 cut(s)	40, 406, 1294, 1468, 1606
NlaIV	GGNNCC	3 cut(s)	387, 1473, 1474
NruI	TCGCGA	1 cut(s)	639
NsiI	ATGCAT	1 cut(s)	1363
NspI	RCATGY	1 cut(s)	1294
PagI	TCATGA	1 cut(s)	1464
PceI	AGGCCT	1 cut(s)	1009
PciI	ACATGT	1 cut(s)	1290
PciSI	GCTCTTC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	1325
PfeI	GAWTC	5 cut(s)	525, 536, 1373, 1579, 1801
PkrI	GCNGC	4 cut(s)	270, 273, 503, 1670
PleI	GAGTC	4 cut(s)	9, 316, 869, 1848
PpsI	GAGTC	4 cut(s)	9, 316, 869, 1848
PscI	ACATGT	1 cut(s)	1290
PshAI	GACNNNNGTC	1 cut(s)	679
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	1835
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	387, 1473, 1474
PspOMI	GGGCCC	1 cut(s)	1471
PspPI	GGNCC	4 cut(s)	386, 1471, 1472, 1720
PsrI	GAACNNNNNNTAC	2 cut(s)	1443, 1475
PstI	CTGCAG	2 cut(s)	1450, 1728
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	2 cut(s)	80, 1537
RruI	TCGCGA	1 cut(s)	639
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	1835
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	9 cut(s)	42, 168, 477, 545, 801, 950, 1182, 1743, 1791
SatI	GCNGC	4 cut(s)	269, 272, 502, 1669
Sau3AI	GATC	9 cut(s)	22, 80, 206, 325, 360, 726, 934, 1093, 1537
Sau96I	GGNCC	4 cut(s)	386, 1471, 1472, 1720
SbfI	CCTGCAGG	1 cut(s)	1728
SchI	GAGTC	4 cut(s)	9, 317, 869, 1849
ScrFI	CCNGG	2 cut(s)	345, 1476
SdaI	CCTGCAGG	1 cut(s)	1728
SduI	GDGCHC	5 cut(s)	378, 1475, 1602, 1685, 1835
SfaNI	GCATC	5 cut(s)	133, 481, 919, 1348, 1370
SfcI	CTRYAG	4 cut(s)	279, 1446, 1701, 1724
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	1628
Sse8387I	CCTGCAGG	1 cut(s)	1728
SseBI	AGGCCT	1 cut(s)	1009
SsiI	CCGC	4 cut(s)	12, 87, 389, 1203
SspI	AATATT	1 cut(s)	1076
SspMI	CTAG	6 cut(s)	336, 591, 1047, 1218, 1502, 1629
SstI	GAGCTC	1 cut(s)	1835
StuI	AGGCCT	1 cut(s)	1009
StyD4I	CCNGG	2 cut(s)	343, 1474
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	280, 605, 784, 1705
TaqI	TCGA	4 cut(s)	321, 523, 1371, 1396
TaqII	GACCGA	1 cut(s)	824
TatI	WGTACW	1 cut(s)	1000
TfiI	GAWTC	5 cut(s)	525, 536, 1373, 1579, 1801
Tru1I	TTAA	9 cut(s)	42, 168, 477, 545, 801, 950, 1182, 1743, 1791
Tru9I	TTAA	9 cut(s)	42, 168, 477, 545, 801, 950, 1182, 1743, 1791
TscAI	CASTG	6 cut(s)	442, 608, 1000, 1173, 1520, 1680
TseI	GCWGC	4 cut(s)	268, 271, 501, 1668
TspDTI	ATGAA	5 cut(s)	1053, 1128, 1136, 1278, 1481
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	6 cut(s)	442, 608, 1000, 1173, 1520, 1680
VneI	GTGCAC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	4 cut(s)	28, 628, 721, 1645
XceI	RCATGY	1 cut(s)	1294
XmiI	GTMKAC	1 cut(s)	1295
XspI	CTAG	6 cut(s)	336, 591, 1047, 1218, 1502, 1629
Zsp2I	ATGCAT	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.