Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Reverse (-)

61683478 .. 61685845

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0487400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAAAATGTCATGCAGATGGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGAGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTCTAATGTATGTTTTGCCGGGTACAATATTGTCTCCAAAGTCGCTCTACACAAAGGCATGAGCCGATATGTGCTTGTAGTTTATGGATATGCGTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATCTCTTTTTCTTAGGTCTGCTGGGAGGAGCGTTAGGAAGTACACTGTACTACATGGGATTGGAATACACTTCACCAGCTTTTACATCTGCAATGGCCAACATGACTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAAGATGGAACAGTTTGATATTTCCAAGCCTGGTAGCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAGGGCGTTGCTGTAATTACAATGCACACCAAAAGCTCCCATCAAACTGCAGGTACCTCAAAATCATCTACAGACGCAGAATGGTTGAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCATTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACATTTCTTGCTCCTATGTATTGTGGAACTGTGATTTATGGAATCACATTTTATGTTCAGACCTTAGTAGTAATAACAAAAGGCCCAGTTTTCACGACAGCTTTTAGACCACTAGCTACCATTGTTGTAGCTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTATATCTCAGCAAGCTATTGACATCAATTTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

366

Amino Acids

40.02

Weight (kDa)

9.34

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	29 - 169	8.6e-16	EamA-like transporter family
EamA	PF00892	202 - 339	1.4e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	557, 722
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	1062
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	4 cut(s)	128, 322, 329, 571
AfiI	CCNNNNNNNGG	2 cut(s)	58, 517
AgsI	TTSAA	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	9 cut(s)	359, 410, 552, 896, 911, 926, 956, 983, 1076
AluI	AGCT	9 cut(s)	359, 410, 552, 896, 911, 926, 956, 983, 1076
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	1062
AoxI	GGCC	2 cut(s)	375, 877
ApeKI	GCWGC	3 cut(s)	482, 644, 749
Asp718I	GGTACC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	611
BbvI	GCAGC	3 cut(s)	469, 656, 761
BccI	CCATC	4 cut(s)	13, 397, 418, 564
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	209, 758, 908
BfmI	CTRYAG	2 cut(s)	564, 585
BfuAI	ACCTGC	2 cut(s)	557, 722
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	3 cut(s)	483, 645, 750
BlsI	GCNGC	3 cut(s)	484, 646, 751
Bme1390I	CCNGG	2 cut(s)	124, 450
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	2 cut(s)	571, 610
BmrFI	CCNGG	2 cut(s)	124, 450
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	2 cut(s)	656, 779
BmuI	ACTGGG	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 517
Bse1I	ACTGG	1 cut(s)	881
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	392
BseGI	GGATG	2 cut(s)	90, 647
BseLI	CCNNNNNNNGG	2 cut(s)	58, 517
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	469, 656, 761
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	2 cut(s)	377, 879
BshNI	GGYRCC	1 cut(s)	569
BshVI	ATCGAT	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	739, 948
BslI	CCNNNNNNNGG	2 cut(s)	58, 517
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	739, 948
BsnI	GGCC	2 cut(s)	377, 879
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	270, 760, 1054
BspANI	GGCC	2 cut(s)	377, 879
BspCNI	CTCAG	1 cut(s)	1081
BspDI	ATCGAT	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	571, 610
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	2 cut(s)	557, 722
BspPI	GGATC	1 cut(s)	1062
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	881
BssMI	GATC	3 cut(s)	270, 760, 1054
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	327, 432, 826
Bst6I	CTCTTC	2 cut(s)	18, 27
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	4 cut(s)	292, 406, 859, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	90, 647
BstKTI	GATC	3 cut(s)	273, 763, 1057
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	270, 760, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 488
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	122, 448
BstSFI	CTRYAG	2 cut(s)	564, 585
BstV1I	GCAGC	3 cut(s)	469, 656, 761
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	377, 879
BsuTUI	ATCGAT	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	90, 647
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	323, 728
BveI	ACCTGC	2 cut(s)	557, 722
Cac8I	GCNNGC	1 cut(s)	1074
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	878
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	127, 321, 328, 570
CviAII	CATG	8 cut(s)	13, 163, 334, 382, 505, 745, 789, 1058
CviQI	GTAC	4 cut(s)	127, 321, 328, 570
DdeI	CTNAG	4 cut(s)	292, 406, 859, 1068
DpnI	GATC	3 cut(s)	272, 762, 1056
DpnII	GATC	3 cut(s)	270, 760, 1054
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	18, 27
EarI	CTCTTC	2 cut(s)	18, 27
Eco24I	GRGCYC	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	611
FaeI	CATG	8 cut(s)	16, 166, 337, 385, 508, 748, 792, 1061
FaqI	GGGAC	2 cut(s)	739, 948
FatI	CATG	8 cut(s)	12, 162, 333, 381, 504, 744, 788, 1057
Fnu4HI	GCNGC	3 cut(s)	483, 645, 750
FokI	GGATG	2 cut(s)	77, 634
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	483, 645, 750
FspBI	CTAG	3 cut(s)	209, 758, 908
GluI	GCNGC	3 cut(s)	483, 645, 750
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	377, 879
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	8 cut(s)	16, 166, 337, 385, 508, 748, 792, 1061
HinfI	GANTC	3 cut(s)	77, 385, 837
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	270, 855
Hpy188III	TCNNGA	4 cut(s)	505, 758, 889, 988
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	409, 598, 1030
HpyCH4III	ACNGT	3 cut(s)	327, 432, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 488
HpyF3I	CTNAG	4 cut(s)	292, 406, 859, 1068
Hsp92II	CATG	8 cut(s)	16, 166, 337, 385, 508, 748, 792, 1061
KpnI	GGTACC	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	270, 760, 1054
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	5 cut(s)	308, 557, 614, 811, 980
Lsp1109I	GCAGC	3 cut(s)	469, 656, 761
LweI	GCATC	2 cut(s)	656, 779
MaeI	CTAG	3 cut(s)	209, 758, 908
MalI	GATC	3 cut(s)	272, 762, 1056
MboI	GATC	3 cut(s)	270, 760, 1054
MboII	GAAGA	5 cut(s)	35, 44, 86, 765, 1054
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	611
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	531, 672, 753, 1087
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	51, 104, 234, 299, 464, 521, 583
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	42, 675
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	124, 450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	224, 488
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	3 cut(s)	270, 760, 1054
NlaIII	CATG	8 cut(s)	16, 166, 337, 385, 508, 748, 792, 1061
NlaIV	GGNNCC	2 cut(s)	571, 610
PagI	TCATGA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	77, 837
PkrI	GCNGC	3 cut(s)	484, 646, 751
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	571, 610
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	4 cut(s)	128, 322, 329, 571
RsaNI	GTAC	4 cut(s)	127, 321, 328, 570
RseI	CAYNNNNRTG	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	42, 675
SatI	GCNGC	3 cut(s)	483, 645, 750
Sau3AI	GATC	3 cut(s)	270, 760, 1054
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	124, 450
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	656, 779
SfcI	CTRYAG	2 cut(s)	564, 585
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	4 cut(s)	531, 672, 753, 1087
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	3 cut(s)	209, 758, 908
StyD4I	CCNGG	2 cut(s)	122, 448
TaaI	ACNGT	3 cut(s)	327, 432, 826
TaqI	TCGA	3 cut(s)	72, 80, 392
TasI	AATT	4 cut(s)	531, 672, 753, 1087
TatI	WGTACW	2 cut(s)	320, 327
TfiI	GAWTC	2 cut(s)	77, 837
Tru1I	TTAA	2 cut(s)	42, 675
Tru9I	TTAA	2 cut(s)	42, 675
TscAI	CASTG	2 cut(s)	330, 735
TseI	GCWGC	3 cut(s)	482, 644, 749
TspDTI	ATGAA	3 cut(s)	391, 618, 627
TspRI	CASTG	2 cut(s)	330, 735
XagI	CCTNNNNNAGG	1 cut(s)	515
XbaI	TCTAGA	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	3 cut(s)	209, 758, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.