Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

14857717 .. 14858663

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTTCTTTTGGCTAGAATTCAGACATGGGTAAAGAGGAAAGCCCAAAAACCACAAGGAGAAAAACCAGATCCTCTGTTTTGGCTACCCCTTCGCTTTGAAGAAACTAAGGCAAGTAGTTTGCACCCGCCAACTCTCAGTGACCTTGTGTTGGGTGAACAAGGAGAATCCTTGAGTGCCAATGATCTTTCGTCTGTTTTTCCTGGGAGATGTAGTCAAATCCTGGAGCTTCTACGCCTTTTGGGTCTGCCAAACTCTCCCATGCTACCTATATTTGTATATGGAGGCACCTCTACCGGGAAAACCAGTATTGTTGTAGAGACCTTTAGGCATCTGAAGCACCCTTTTGTTTATTCAAGCTGCCTTACCTGTTATAGTCCTCGAATCTTGTTTGAATCCGTTCTGAACCAACTCTTTCTTCACCCAAAGAATGCAGCGAATGGTTATTCAAGTGCCAAGTGCTGTGAAAGCCCATCTGATTTTATTCATTTTCTTCGGGAAGCCTTGGTCAGCATTCTTGGTAATACAAAGGGACTTTCGGGGAAAGTAACCTCCAAAAGGTCTGGAAAGGCTAATGGAAATATGATCTACTTGGTATTTGACAATTTGGAGCGTCTTAGAGAATGGGATAAAGGTTCCCTTATATTACCTTTACTGTTTAATCTCTATGACATTTTGAAAATGCCTGAGGTCGGTCTTATCTTTATCAGCAGTGCCTCGCCGGATACGTATTACTCAAATATGGGCTATGTGGAGCCTATCCCTATGTATCTTCCTGATTATACACAAGATGATCTGCAGAAAATCTTCATGAGAAACCAGGCAAACAAAAAGCTTTTCGCCTTTTTCTCAGTGTCGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

288

Amino Acids

32.34

Weight (kDa)

8.8

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	67 - 208	8.8e-11	AAA ATPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	151, 297, 558, 692
AgsI	TTSAA	5 cut(s)	101, 357, 395, 450, 679
AjnI	CCWGG	3 cut(s)	202, 222, 819
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	3 cut(s)	229, 360, 835
AluI	AGCT	3 cut(s)	229, 360, 835
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	360, 434
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	2 cut(s)	399, 806
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	167, 413
AxyI	CCTNAGG	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	347, 446
BccI	CCATC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	204, 224, 821
BciVI	GTATCC	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	2 cut(s)	361, 435
BlsI	GCNGC	2 cut(s)	362, 436
Bme1390I	CCNGG	4 cut(s)	204, 224, 298, 821
BmiI	GGNNCC	3 cut(s)	289, 637, 756
BmrFI	CCNGG	4 cut(s)	204, 224, 298, 821
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	203, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 297, 558, 692
Bse1I	ACTGG	1 cut(s)	306
Bse21I	CCTNAGG	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	204, 224, 821
BseDI	CCNNGG	2 cut(s)	203, 504
BseLI	CCNNNNNNNGG	4 cut(s)	151, 297, 558, 692
BseMII	CTCAG	3 cut(s)	151, 678, 864
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	347, 446
BshNI	GGYRCC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	297, 722
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	4 cut(s)	151, 297, 558, 692
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	2 cut(s)	436, 513
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	70, 184, 585, 793
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	150, 679, 863
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	289, 637, 756
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	203, 504
BssMI	GATC	4 cut(s)	70, 184, 585, 793
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	204, 224, 821
Bst4CI	ACNGT	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	729
BstDEI	CTNAG	5 cut(s)	108, 137, 617, 687, 850
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstKTI	GATC	4 cut(s)	73, 187, 588, 796
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	4 cut(s)	70, 184, 585, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 468
BstNI	CCWGG	3 cut(s)	204, 224, 821
BstSCI	CCNGG	4 cut(s)	202, 222, 296, 819
BstSFI	CTRYAG	1 cut(s)	797
BstSNI	TACGTA	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	347, 446
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	3 cut(s)	145, 718, 858
CciI	TCATGA	1 cut(s)	810
CseI	GACGC	1 cut(s)	602
CviAII	CATG	3 cut(s)	27, 262, 811
DdeI	CTNAG	5 cut(s)	108, 137, 617, 687, 850
DpnI	GATC	4 cut(s)	72, 186, 587, 795
DpnII	GATC	4 cut(s)	70, 184, 585, 793
Eco105I	TACGTA	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	687
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	202, 222, 819
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	30, 265, 814
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	3 cut(s)	26, 261, 810
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	361, 435
Fsp4HI	GCNGC	2 cut(s)	361, 435
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	361, 435
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	2 cut(s)	297, 722
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	3 cut(s)	30, 265, 814
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	3 cut(s)	167, 384, 395
HpaII	CCGG	2 cut(s)	297, 722
HphI	GGTGA	2 cut(s)	167, 413
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	24, 336, 405, 478
Hpy188III	TCNNGA	4 cut(s)	497, 564, 776, 811
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	1 cut(s)	728
HpyCH4V	TGCA	3 cut(s)	124, 434, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 468
HpyF3I	CTNAG	5 cut(s)	108, 137, 617, 687, 850
HpySE526I	ACGT	1 cut(s)	728
Hsp92II	CATG	3 cut(s)	30, 265, 814
Kzo9I	GATC	4 cut(s)	70, 184, 585, 793
LmnI	GCTCC	3 cut(s)	226, 610, 754
Lsp1109I	GCAGC	2 cut(s)	347, 446
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	2 cut(s)	140, 547
MalI	GATC	4 cut(s)	72, 186, 587, 795
MboI	GATC	4 cut(s)	70, 184, 585, 793
MboII	GAAGA	5 cut(s)	113, 410, 485, 764, 799
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	18, 604
MnlI	CCTC	8 cut(s)	30, 84, 278, 301, 390, 562, 682, 727
MroXI	GAANNNNTTC	2 cut(s)	399, 806
MseI	TTAA	1 cut(s)	660
MspI	CCGG	2 cut(s)	297, 722
MspR9I	CCNGG	4 cut(s)	204, 224, 298, 821
Mva1269I	GAATGC	2 cut(s)	436, 513
MvaI	CCWGG	3 cut(s)	204, 224, 821
MwoI	GCNNNNNNNGC	2 cut(s)	337, 468
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	4 cut(s)	70, 184, 585, 793
NlaIII	CATG	3 cut(s)	30, 265, 814
NlaIV	GGNNCC	3 cut(s)	289, 637, 756
NmuCI	GTSAC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	725
PctI	GAATGC	2 cut(s)	436, 513
PdmI	GAANNNNTTC	2 cut(s)	399, 806
PfeI	GAWTC	3 cut(s)	167, 384, 395
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	362, 436
Ppu21I	YACGTR	1 cut(s)	729
Psp6I	CCWGG	3 cut(s)	202, 222, 819
PspGI	CCWGG	3 cut(s)	202, 222, 819
PspN4I	GGNNCC	3 cut(s)	289, 637, 756
PstI	CTGCAG	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	361, 435
Sau3AI	GATC	4 cut(s)	70, 184, 585, 793
ScrFI	CCNGG	4 cut(s)	204, 224, 298, 821
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SnaBI	TACGTA	1 cut(s)	729
Sse9I	AATT	2 cut(s)	18, 604
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	4 cut(s)	202, 222, 296, 819
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	1 cut(s)	382
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	2 cut(s)	18, 604
TfiI	GAWTC	3 cut(s)	167, 384, 395
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	3 cut(s)	145, 718, 858
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	360, 434
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	476, 799
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	145, 718, 858
XagI	CCTNNNNNAGG	1 cut(s)	556
XapI	RAATTY	1 cut(s)	18
XmnI	GAANNNNTTC	2 cut(s)	399, 806
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.