Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

78271121 .. 78282223

Gene Structure 11103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG567600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGGTGAGAACTCCTTGCTGTGATGAAAGGGGAGTGAAGAAAGGTACATGGACTCCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCTCCAAGTTGGCTGGGCTTTCAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAATTACTTGAGGCCGAACATCAAGAGAGGAAACTACACCAATGAAGAAGAGGAAATAATAATCAGGCTTCACGAAAAGCTGGGGAACAAATGGTCTGCGATTGCGGCACAGCTTCAGGGAAGAACTGACAATGAGGTTAAGAATCACTGGCACACAAACCTGAAGAAACGTTTAATGATGAACAAGCACAAGGCGTCCTCAGTTTCAATAACACATGATGATCATCATGAAGAAGTAGTACTGAAATCATCGGATCAGCCAAAGATTACTGCTACTGCTGATTTCGCAAATGCAGAAACTACTGTTGATCAAATTCCCCAAATTGATTATTTTGATTACCCAGAACTGTGGTCGCCACAGCCATCATCGAGTGAGGTCTCGTCCATGACCACCGATACTGCGGTTGCGATTACTGCTGCAGATGGTTTGGTTGTAGTGGACAATGCTACTTCAGCTGCCATGGAAACAATTTATGGAGATTTCGGAGATAATTTCTGGACAGAGCCATTTCTGGCCGATAATTCCTACAACCCAACTGGTTTTTATACACCCTTGATGGAGCCTGAGTTTCTAAGCTTCTTCCCCTTCAGGCTAGAATTGTGGGGAGACATGGAGTCAGAGACTATGCTCTGTACCACAGATCAATGTGTTGAACAAGAGCCACAGTACACACATATTGACCGGAATGAATTCTCACAGAGAAGGCACAAGAAGCAGGAGGAGGAGGAGATTCTCATATCTGAATGCAAGTGTGATGAAAAGGATCTTGAAAGTGCATGTGGAGAACGGTGCTTGAATGTGTTGACCAGCACGCAATGCACTCCTGGATATTGCCCTTGTGGTGTCTATTGTAAGAATCAGAATTCAGACATGGTTAAGGAAGAAAGGCCACAAATTACAAGGAGAGCAACCAGATCCTCCGCTTTGGCTAAAAGTGTAGTTGAAGAAACAGATACAAGCAGTCAGCACCCAAATGATGCTTCTGCGAGTTCAGACATTATTAAAGAAGAAAGCCCACAAATTTCAAGGAGAACAACCCGATCCTCCGTTTTGGCCAAATGTTCAAACAATGTAGTTGAAGAAACAGATGCAAATAGTCAGCAGCAACCGACTTTAGATGACCTTGTGATTGGAGAAGGAGAGTCCTTTAGCTTCAATGATCTGGTGTCTAGTTTTCCTGGTAAAGAAAGTCAGATCAAAGAGCTTGTGCACCTTTTGGGTCCACAGAACTCTCCTATGCTTCCTATATTTATATATGGAGGCTCTTCCACTGGAAAAACCAGTATTGTTCTACAAACATTTAGGCATCTTAAACGACCTTTTGTTTACTCAAGCTGCCTTACCTGTTATAATCCTCGAATCGTGTTTGAATCCATATTAAATCAATTGTTCCTTCACCGAAAGAAAGCAGAAAATGGTTATTCTAGTGCAAAGCGCTGTGAAAGGCCATCTGATTTTGTGAATTTTCTTCGCGAAGCCTTGGTTAGCATTATTGGTAATCCTCAGGGACAAAAGTCAGGATTGAGTAGCAAAAGGTCAGGAAAGGCTAATGGAAATATGATCTACTTGATTTTTGACAATTTGGAGCGTGTCAAAGGGTGGGACAAAGGTTCTACTGTGTTATCTTTGTTGTTTAATCTCTATGACACTCTGAAAATGCCCGAGGTCGGTCTTATCTTCATCAGCAATACCTCACCGGATACATACGACTCAAATATGGGTTATGTTGAGCCTAACCCTCTATATCTTCCTGATTATACAGATGATGATCTTGGTCAAATCTTAATGAGACACCAAGCAAACAAAAAGCTTTACACCTCTTTTCTCAGTGTTGTACTAAGGCCCTTCAGTAGAATTACCAGACGAGTGGATGAATTGTCTAGTGCATTTTCACTATTATTCAGAAAATATTGTGAACCTATTACTGATCTTGGGGTTGTTCCCAATGAAGAGATGAAGAGAAAGTTGTTTAGTCAATTTCAGCCCCATATTGCTCCTGCACTGAATGAGATATTTAAGGTTTCAACTCAGCCTTCCACTGAAGTTGAAGCTAGGGAGAGAAAGCCAAAGGTTAGCACAAGGAAATCCCGAGGTTATGAAGTTGCTGACCAGTTAGATTTTCACATGTCTACCTCTGCCAAGTATCTTCTAATTTCAGCATTCCTTGCTTCAAGAAATCCAGCTACCCTTGATGCATCATTGTTCGATTCTACTGGAGGTTCTAATAATCGAAAACGAAAGAGGAAGGTCTCTGAGAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTACTCATGAAGGGCCCCGGAACATTCCCAATGGAGAGGTTACTAGCCATATTCCAGTGTATTACATCTGTGGCGGAAGATCCACTTGATGATGAGGAACAAGCGCAGGATGGGTTAGGGATTCAAGATGGGCATTGTGGGCTCATGTCTGATGTCCTCTTACAATTGACTAGTCTCTGTGGTGCAAATTTTATTGTCAAAGGAGGAAGCTGCCCACTCGAGGGCTCAACTCGCTATCGTTCTACAGTTAGTGAAGATATGGCCCTGCAGGTAGCAAGGAGCATTAAGTTTCCTCTCTCAAAAAGGGTCAGATTGTGGAAAGCCTTGAAGGAGCTTAATCATATGATTCAGCACCAAATTACTCTATTTTATTGGAGCTCAGGGAGTCAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

953

Amino Acids

107.73

Weight (kDa)

6.04

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	3.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	3.1e-09	Myb-like DNA-binding domain
AWS	PF17907	313 - 345	2.4e-09	AWS domain
AAA_16	PF13191	450 - 611	7.1e-11	AAA ATPase domain
ORC5_lid	PF21639	663 - 716	2.6e-11	ORC5, lid domain
ORC5_C	PF14630	767 - 922	6.9e-37	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1524
Acc36I	ACCTGC	1 cut(s)	2725
AccB1I	GGYRCC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	2303
AccII	CGCG	1 cut(s)	1647
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	4 cut(s)	278, 575, 1095, 2540
AclI	AACGTT	1 cut(s)	343
AclWI	GGATC	5 cut(s)	435, 945, 1083, 1209, 2540
AcoI	YGGCCR	2 cut(s)	687, 1227
AcsI	RAATTY	6 cut(s)	486, 863, 1036, 1194, 1636, 2653
AcuI	CTGAAG	6 cut(s)	272, 356, 609, 745, 2005, 2235
AcyI	GRCGYC	2 cut(s)	112, 368
AfaI	GTAC	5 cut(s)	46, 414, 808, 842, 2010
AfeI	AGCGCT	1 cut(s)	1610
AfiI	CCNNNNNNNGG	3 cut(s)	1841, 2686, 2687
AflIII	ACRYGT	1 cut(s)	2298
AhdI	GACNNNNNGTC	1 cut(s)	787
AhlI	ACTAGT	1 cut(s)	2636
AjnI	CCWGG	2 cut(s)	997, 1351
AjuI	GAANNNNNNNTTGG	2 cut(s)	1138, 1170
Alw21I	GWGCWC	2 cut(s)	1386, 2846
Alw26I	GTCTC	6 cut(s)	556, 774, 788, 1957, 2428, 2645
Alw44I	GTGCAC	1 cut(s)	1382
AlwI	GGATC	5 cut(s)	435, 945, 1083, 1209, 2540
Ama87I	CYCGRG	3 cut(s)	1835, 2262, 2684
Aor13HI	TCCGGA	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	1610
AoxI	GGCC	8 cut(s)	185, 687, 1061, 1227, 1619, 2015, 2479, 2727
ApaI	GGGCCC	1 cut(s)	2483
ApaLI	GTGCAC	1 cut(s)	1382
ApeKI	GCWGC	6 cut(s)	99, 590, 629, 1276, 1509, 2676
ApoI	RAATTY	6 cut(s)	486, 863, 1036, 1194, 1636, 2653
Asp700I	GAANNNNTTC	1 cut(s)	863
AspLEI	GCGC	3 cut(s)	114, 1611, 2572
AspS9I	GGNCC	5 cut(s)	1394, 2016, 2479, 2480, 2728
AsuC2I	CCSGG	1 cut(s)	2484
AsuHPI	GGTGA	3 cut(s)	16, 1562, 1860
AvaI	CYCGRG	3 cut(s)	1835, 2262, 2684
AvaII	GGWCC	1 cut(s)	1394
AxyI	CCTNAGG	1 cut(s)	1677
BaeGI	GKGCMC	2 cut(s)	1386, 2483
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	1229
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	4 cut(s)	2483, 2610, 2693, 2846
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	2 cut(s)	1386, 2846
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	6 cut(s)	86, 577, 616, 1288, 1496, 2663
BccI	CCATC	6 cut(s)	544, 590, 724, 1630, 2570, 2588
BciT130I	CCWGG	2 cut(s)	999, 1353
BciVI	GTATCC	1 cut(s)	1867
BclI	TGATCA	2 cut(s)	394, 481
BcnI	CCSGG	1 cut(s)	2484
BcoDI	GTCTC	6 cut(s)	556, 774, 788, 1957, 2428, 2645
BcuI	ACTAGT	1 cut(s)	2636
BfaI	CTAG	8 cut(s)	90, 767, 1344, 1599, 2055, 2226, 2510, 2637
BfmI	CTRYAG	4 cut(s)	591, 2454, 2709, 2732
BfoI	RGCGCY	2 cut(s)	115, 1612
BfuAI	ACCTGC	1 cut(s)	2725
BfuI	GTATCC	1 cut(s)	1867
BisI	GCNGC	7 cut(s)	100, 279, 591, 630, 1277, 1510, 2677
BlsI	GCNGC	7 cut(s)	101, 280, 592, 631, 1278, 1511, 2678
BmcAI	AGTACT	1 cut(s)	414
Bme1390I	CCNGG	3 cut(s)	999, 1353, 2484
Bme18I	GGWCC	1 cut(s)	1394
BmeRI	GACNNNNNGTC	1 cut(s)	787
BmeT110I	CYCGRG	3 cut(s)	1835, 2262, 2684
BmgT120I	GGNCC	5 cut(s)	1394, 2016, 2479, 2480, 2728
BmiI	GGNNCC	5 cut(s)	113, 735, 1395, 2481, 2482
BmrFI	CCNGG	3 cut(s)	999, 1353, 2484
BmsI	GCATC	5 cut(s)	1141, 1252, 1489, 2356, 2378
BoxI	GACNNNNGTC	1 cut(s)	1687
BpmI	CTGGAG	1 cut(s)	2409
Bpu10I	CCTNAGC	2 cut(s)	164, 2845
BpuEI	CTTGAG	2 cut(s)	202, 1489
BpuMI	CCSGG	1 cut(s)	2484
BsaBI	GATNNNNATC	2 cut(s)	396, 1941
BsaHI	GRCGYC	2 cut(s)	112, 368
BsaI	GGTCTC	2 cut(s)	556, 2428
BsaJI	CCNNGG	5 cut(s)	633, 1653, 1836, 2263, 2482
BsaWI	WCCGGW	3 cut(s)	55, 855, 1870
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 725, 755
Bsc4I	CCNNNNNNNGG	3 cut(s)	1841, 2686, 2687
Bse1I	ACTGG	7 cut(s)	326, 715, 1450, 1455, 2284, 2392, 2521
Bse21I	CCTNAGG	1 cut(s)	1677
Bse3DI	GCAATG	1 cut(s)	995
Bse8I	GATNNNNATC	2 cut(s)	396, 1941
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	999, 1353
BseDI	CCNNGG	5 cut(s)	633, 1653, 1836, 2263, 2482
BseGI	GGATG	2 cut(s)	2050, 2581
BseJI	GATNNNNATC	2 cut(s)	396, 1941
BseLI	CCNNNNNNNGG	3 cut(s)	1841, 2686, 2687
BseMI	GCAATG	1 cut(s)	995
BseMII	CTCAG	8 cut(s)	155, 387, 729, 1691, 2014, 2216, 2418, 2859
BseNI	ACTGG	7 cut(s)	326, 715, 1450, 1455, 2284, 2392, 2521
BseRI	GAGGAG	3 cut(s)	908, 911, 914
BseSI	GKGCMC	2 cut(s)	1386, 2483
BseXI	GCAGC	6 cut(s)	86, 577, 616, 1288, 1496, 2663
BseYI	CCCAGC	2 cut(s)	131, 253
BsgI	GTGCAG	1 cut(s)	2157
Bsh1236I	CGCG	1 cut(s)	1647
BshFI	GGCC	8 cut(s)	187, 689, 1063, 1229, 1621, 2017, 2481, 2729
BshNI	GGYRCC	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	1386, 2846
BsiHKCI	CYCGRG	3 cut(s)	1835, 2262, 2684
BsiSI	CCGG	4 cut(s)	56, 856, 1871, 2484
BslFI	GGGAC	2 cut(s)	1695, 1790
BslI	CCNNNNNNNGG	3 cut(s)	1841, 2686, 2687
BsmAI	GTCTC	6 cut(s)	556, 774, 788, 1957, 2428, 2645
BsmFI	GGGAC	2 cut(s)	1695, 1790
BsmI	GAATGC	2 cut(s)	923, 2333
BsnI	GGCC	8 cut(s)	187, 689, 1063, 1229, 1621, 2017, 2481, 2729
Bso31I	GGTCTC	2 cut(s)	556, 2428
BsoBI	CYCGRG	3 cut(s)	1835, 2262, 2684
Bsp120I	GGGCCC	1 cut(s)	2479
Bsp1286I	GDGCHC	5 cut(s)	1386, 2483, 2610, 2693, 2846
Bsp13I	TCCGGA	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	633
Bsp68I	TCGCGA	1 cut(s)	1647
BspACI	CCGC	4 cut(s)	278, 575, 1095, 2540
BspANI	GGCC	8 cut(s)	187, 689, 1063, 1229, 1621, 2017, 2481, 2729
BspCNI	CTCAG	8 cut(s)	156, 386, 730, 1690, 2013, 2215, 2419, 2858
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	1647
BspHI	TCATGA	2 cut(s)	400, 2472
BspLI	GGNNCC	5 cut(s)	113, 735, 1395, 2481, 2482
BspMAI	CTGCAG	3 cut(s)	595, 2458, 2736
BspMI	ACCTGC	1 cut(s)	2725
BspPI	GGATC	5 cut(s)	435, 945, 1083, 1209, 2540
BspQI	GCTCTTC	1 cut(s)	1444
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	2 cut(s)	556, 2428
BsrDI	GCAATG	1 cut(s)	995
BsrI	ACTGG	7 cut(s)	326, 715, 1450, 1455, 2284, 2392, 2521
BssECI	CCNNGG	5 cut(s)	633, 1653, 1836, 2263, 2482
BssNI	GRCGYC	2 cut(s)	112, 368
BssT1I	CCWWGG	2 cut(s)	633, 1653
Bst2UI	CCWGG	2 cut(s)	999, 1353
Bst4CI	ACNGT	6 cut(s)	478, 522, 840, 963, 1792, 2713
Bst6I	CTCTTC	5 cut(s)	146, 216, 1444, 2118, 2126
BstACI	GRCGYC	2 cut(s)	112, 368
BstAPI	GCANNNNNTGC	2 cut(s)	990, 2339
BstC8I	GCNNGC	2 cut(s)	161, 986
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	2 cut(s)	2050, 2581
BstFNI	CGCG	1 cut(s)	1647
BstH2I	RGCGCY	2 cut(s)	115, 1612
BstHHI	GCGC	3 cut(s)	114, 1611, 2572
BstMAI	GTCTC	6 cut(s)	556, 774, 788, 1957, 2428, 2645
BstNI	CCWGG	2 cut(s)	999, 1353
BstNSI	RCATGY	2 cut(s)	954, 2302
BstPAI	GACNNNNGTC	1 cut(s)	1687
BstSCI	CCNGG	3 cut(s)	997, 1351, 2482
BstSFI	CTRYAG	4 cut(s)	591, 2454, 2709, 2732
BstSLI	GKGCMC	2 cut(s)	1386, 2483
BstUI	CGCG	1 cut(s)	1647
BstV1I	GCAGC	6 cut(s)	86, 577, 616, 1288, 1496, 2663
BstX2I	RGATCY	3 cut(s)	937, 1088, 2545
BstXI	CCANNNNNNTGG	2 cut(s)	522, 2041
BstYI	RGATCY	3 cut(s)	937, 1088, 2545
Bsu36I	CCTNAGG	1 cut(s)	1677
BsuI	GTATCC	1 cut(s)	1867
BsuRI	GGCC	8 cut(s)	187, 689, 1063, 1229, 1621, 2017, 2481, 2729
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	2050, 2581
BtsIMutI	CAGTG	6 cut(s)	319, 1443, 2008, 2174, 2211, 2528
BtuMI	TCGCGA	1 cut(s)	1647
BveI	ACCTGC	1 cut(s)	2725
Cac8I	GCNNGC	2 cut(s)	161, 986
CciI	TCATGA	2 cut(s)	400, 2472
CfoI	GCGC	3 cut(s)	114, 1611, 2572
Cfr13I	GGNCC	5 cut(s)	1394, 2016, 2479, 2480, 2728
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	5 cut(s)	45, 413, 807, 841, 2009
CspCI	CAANNNNNGTGG	2 cut(s)	2200, 2235
CviQI	GTAC	5 cut(s)	45, 413, 807, 841, 2009
DinI	GGCGCC	1 cut(s)	113
DriI	GACNNNNNGTC	1 cut(s)	787
EaeI	YGGCCR	2 cut(s)	687, 1227
Eam1104I	CTCTTC	5 cut(s)	146, 216, 1444, 2118, 2126
Eam1105I	GACNNNNNGTC	1 cut(s)	787
EarI	CTCTTC	5 cut(s)	146, 216, 1444, 2118, 2126
EciI	GGCGGA	1 cut(s)	2555
Ecl136II	GAGCTC	1 cut(s)	2844
Eco130I	CCWWGG	2 cut(s)	633, 1653
Eco24I	GRGCYC	4 cut(s)	2483, 2610, 2693, 2846
Eco31I	GGTCTC	2 cut(s)	556, 2428
Eco47I	GGWCC	1 cut(s)	1394
Eco47III	AGCGCT	1 cut(s)	1610
Eco53kI	GAGCTC	1 cut(s)	2844
Eco57I	CTGAAG	6 cut(s)	272, 356, 609, 745, 2005, 2235
Eco81I	CCTNAGG	1 cut(s)	1677
Eco88I	CYCGRG	3 cut(s)	1835, 2262, 2684
EcoICRI	GAGCTC	1 cut(s)	2844
EcoO109I	RGGNCCY	3 cut(s)	2016, 2479, 2480
EcoRI	GAATTC	2 cut(s)	863, 1036
EcoRII	CCWGG	2 cut(s)	997, 1351
EcoT14I	CCWWGG	2 cut(s)	633, 1653
EcoT22I	ATGCAT	1 cut(s)	2371
EcoT38I	GRGCYC	4 cut(s)	2483, 2610, 2693, 2846
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	633, 1653
FalI	AAGNNNNNCTT	2 cut(s)	2535, 2567
FaqI	GGGAC	2 cut(s)	1695, 1790
FauNDI	CATATG	1 cut(s)	2808
FbaI	TGATCA	2 cut(s)	394, 481
FblI	GTMKAC	1 cut(s)	2303
Fnu4HI	GCNGC	7 cut(s)	100, 279, 591, 630, 1277, 1510, 2677
FokI	GGATG	2 cut(s)	2057, 2588
FriOI	GRGCYC	4 cut(s)	2483, 2610, 2693, 2846
Fsp4HI	GCNGC	7 cut(s)	100, 279, 591, 630, 1277, 1510, 2677
FspBI	CTAG	8 cut(s)	90, 767, 1344, 1599, 2055, 2226, 2510, 2637
GlaI	GCGC	3 cut(s)	113, 1610, 2571
GluI	GCNGC	7 cut(s)	100, 279, 591, 630, 1277, 1510, 2677
GsaI	CCCAGC	2 cut(s)	135, 257
GsuI	CTGGAG	1 cut(s)	2409
HaeII	RGCGCY	2 cut(s)	115, 1612
HaeIII	GGCC	8 cut(s)	187, 689, 1063, 1229, 1621, 2017, 2481, 2729
HapII	CCGG	4 cut(s)	56, 856, 1871, 2484
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	3 cut(s)	114, 1611, 2572
Hin1I	GRCGYC	2 cut(s)	112, 368
Hin6I	GCGC	3 cut(s)	112, 1609, 2570
HinP1I	GCGC	3 cut(s)	112, 1609, 2570
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	2 cut(s)	748, 1982
HpaII	CCGG	4 cut(s)	56, 856, 1871, 2484
HphI	GGTGA	3 cut(s)	16, 1562, 1860
Hpy166II	GTNNAC	8 cut(s)	613, 843, 978, 1384, 1397, 1501, 2090, 2304
Hpy8I	GTNNAC	8 cut(s)	613, 843, 978, 1384, 1397, 1501, 2090, 2304
HpyCH4III	ACNGT	6 cut(s)	478, 522, 840, 963, 1792, 2713
HpyCH4IV	ACGT	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	2 cut(s)	112, 368
HspAI	GCGC	3 cut(s)	112, 1609, 2570
KasI	GGCGCC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	394, 481
LguI	GCTCTTC	1 cut(s)	1444
LmnI	GCTCC	6 cut(s)	733, 1759, 2173, 2745, 2797, 2841
Lsp1109I	GCAGC	6 cut(s)	86, 577, 616, 1288, 1496, 2663
LweI	GCATC	5 cut(s)	1141, 1252, 1489, 2356, 2378
MaeI	CTAG	8 cut(s)	90, 767, 1344, 1599, 2055, 2226, 2510, 2637
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	85, 2505
MfeI	CAATTG	2 cut(s)	1559, 2630
MflI	RGATCY	3 cut(s)	937, 1088, 2545
MhlI	GDGCHC	5 cut(s)	1386, 2483, 2610, 2693, 2846
MlsI	TGGCCA	1 cut(s)	1229
MluNI	TGGCCA	1 cut(s)	1229
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	5 cut(s)	46, 797, 1325, 1877, 2860
Mox20I	TGGCCA	1 cut(s)	1229
Mph1103I	ATGCAT	1 cut(s)	2371
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	1229
MslI	CAYNNNNRTG	1 cut(s)	1146
Msp20I	TGGCCA	1 cut(s)	1229
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	4 cut(s)	56, 856, 1871, 2484
MspR9I	CCNGG	3 cut(s)	999, 1353, 2484
MunI	CAATTG	2 cut(s)	1559, 2630
Mva1269I	GAATGC	2 cut(s)	923, 2333
MvaI	CCWGG	2 cut(s)	999, 1353
MvnI	CGCG	1 cut(s)	1647
NarI	GGCGCC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	2484
NcoI	CCATGG	1 cut(s)	633
NdeI	CATATG	1 cut(s)	2808
NlaIV	GGNNCC	5 cut(s)	113, 735, 1395, 2481, 2482
NruI	TCGCGA	1 cut(s)	1647
NsiI	ATGCAT	1 cut(s)	2371
NspI	RCATGY	2 cut(s)	954, 2302
PaeR7I	CTCGAG	1 cut(s)	2684
PagI	TCATGA	2 cut(s)	400, 2472
PciI	ACATGT	1 cut(s)	2298
PciSI	GCTCTTC	1 cut(s)	1444
PctI	GAATGC	2 cut(s)	923, 2333
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	8 cut(s)	316, 904, 1030, 1533, 1544, 2381, 2587, 2812
PfoI	TCCNGGA	1 cut(s)	997
PkrI	GCNGC	7 cut(s)	101, 280, 592, 631, 1278, 1511, 2678
PleI	GAGTC	5 cut(s)	46, 796, 1324, 1877, 2859
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	5 cut(s)	46, 796, 1324, 1877, 2859
PscI	ACATGT	1 cut(s)	2298
PshAI	GACNNNNGTC	1 cut(s)	1687
PsiI	TTATAA	1 cut(s)	1524
Psp124BI	GAGCTC	1 cut(s)	2846
Psp1406I	AACGTT	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	997, 1351
PspFI	CCCAGC	2 cut(s)	131, 253
PspGI	CCWGG	2 cut(s)	997, 1351
PspN4I	GGNNCC	5 cut(s)	113, 735, 1395, 2481, 2482
PspOMI	GGGCCC	1 cut(s)	2479
PspPI	GGNCC	5 cut(s)	1394, 2016, 2479, 2480, 2728
PspXI	VCTCGAGB	1 cut(s)	2684
PsrI	GAACNNNNNNTAC	2 cut(s)	2451, 2483
PstI	CTGCAG	3 cut(s)	595, 2458, 2736
PsuI	RGATCY	3 cut(s)	937, 1088, 2545
PvuII	CAGCTG	1 cut(s)	629
RruI	TCGCGA	1 cut(s)	1647
RsaI	GTAC	5 cut(s)	46, 414, 808, 842, 2010
RsaNI	GTAC	5 cut(s)	45, 413, 807, 841, 2009
RseI	CAYNNNNRTG	1 cut(s)	1146
SacI	GAGCTC	1 cut(s)	2846
SapI	GCTCTTC	1 cut(s)	1444
SatI	GCNGC	7 cut(s)	100, 279, 591, 630, 1277, 1510, 2677
Sau96I	GGNCC	5 cut(s)	1394, 2016, 2479, 2480, 2728
SbfI	CCTGCAGG	1 cut(s)	2736
ScaI	AGTACT	1 cut(s)	414
SchI	GAGTC	5 cut(s)	46, 797, 1325, 1877, 2860
ScrFI	CCNGG	3 cut(s)	999, 1353, 2484
SdaI	CCTGCAGG	1 cut(s)	2736
SduI	GDGCHC	5 cut(s)	1386, 2483, 2610, 2693, 2846
SfaNI	GCATC	5 cut(s)	1141, 1252, 1489, 2356, 2378
SfcI	CTRYAG	4 cut(s)	591, 2454, 2709, 2732
SfoI	GGCGCC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	2684
SinI	GGWCC	1 cut(s)	1394
SlaI	CTCGAG	1 cut(s)	2684
SmiMI	CAYNNNNRTG	1 cut(s)	1146
SmlI	CTYRAG	3 cut(s)	181, 1504, 2684
SmoI	CTYRAG	3 cut(s)	181, 1504, 2684
SpeI	ACTAGT	1 cut(s)	2636
Sse8387I	CCTGCAGG	1 cut(s)	2736
SsiI	CCGC	4 cut(s)	278, 575, 1095, 2540
SspDI	GGCGCC	1 cut(s)	111
SspI	AATATT	1 cut(s)	2084
SspMI	CTAG	8 cut(s)	90, 767, 1344, 1599, 2055, 2226, 2510, 2637
SstI	GAGCTC	1 cut(s)	2846
StyD4I	CCNGG	3 cut(s)	997, 1351, 2482
StyI	CCWWGG	2 cut(s)	633, 1653
TaaI	ACNGT	6 cut(s)	478, 522, 840, 963, 1792, 2713
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	5 cut(s)	542, 1531, 2379, 2404, 2685
TaqII	GACCGA	1 cut(s)	1832
TatI	WGTACW	3 cut(s)	412, 840, 2008
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	8 cut(s)	316, 904, 1030, 1533, 1544, 2381, 2587, 2812
TscAI	CASTG	6 cut(s)	326, 1450, 2008, 2181, 2218, 2528
TseI	GCWGC	6 cut(s)	99, 590, 629, 1276, 1509, 2676
TspGWI	ACGGA	1 cut(s)	1210
TspRI	CASTG	6 cut(s)	326, 1450, 2008, 2181, 2218, 2528
VneI	GTGCAC	1 cut(s)	1382
VpaK11BI	GGWCC	1 cut(s)	1394
XapI	RAATTY	6 cut(s)	486, 863, 1036, 1194, 1636, 2653
XceI	RCATGY	2 cut(s)	954, 2302
XhoI	CTCGAG	1 cut(s)	2684
XmiI	GTMKAC	1 cut(s)	2303
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	8 cut(s)	90, 767, 1344, 1599, 2055, 2226, 2510, 2637
ZrmI	AGTACT	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	2371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.