Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

34370175 .. 34374244

Gene Structure 4070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGTTAAAGAAGAAAGCCCACAAATCACAAGGAGAACAACCCGATCCTCTTCTTTGGCCAAATGTTCAAACAATGTAGTTGAAGAAACAAAAGCAAATAGTCAGCAGCAACTGACTTTAGATGACCTTGTGATTGGAGAAGAAGGAGAGTCCTTTAGCTTCGCTGATCTGGTGTCTAGTTTTCCTGGTAGAGATAGTCAGATCAAAGAGCTTGTGCACCTTTTGGGTCCGCAGAACTCTCCCATGCTTCCTATATTTATATATGGAGGCTCTTCCACTGGAAAAACTAGTATTGTTCTACAAACATTTAGGCATCTTAAACGACCTATTGTTTACCTAAGCTGCCTTACCTGTTATAATCCTCGAATCTTATTTGAATCCATATTGAATCAATTGTACCTTCACCAAAAGAATGCAGAAAATGGTTATTCTAGTGCAAAGCGCTGTGAAAAACCATCTGATTTTGTGAATTTTCTTCGCGAAGCCTTGGTTAGCATTATTGGTAATCCTCAGGGACAAAAGTCAGGATTGAGTAGCAAAAGGTCAGGAAAGGCTAGTGGAAATATGATCTACTTGATTTTTGACAATTTGGAGCGTGTCAAAGGGTGGGACAAAGGTTCTACTGTGTTACCTTTGTTGTTTAATCTCTATGATACTCTGAAAAAGCCCGAGGTCGGTCTTATCTTCATCAGCAATACCTCACCGGATACATATGACTCAAATATGGGTTATGTTGAGCCTAACCCTCTATATCTTCCTGATTATATGGATGATGATCTTGGTCAAATCTTAATGAGAAACCAAGCAAACAAAAAGCTTTATACCTCTTTTCTCAGTGTTGTACTAAGGCCTTTCAGTAGAATTACCAGACGAGCGGATGAATTGTCTAGTGCCTTTTCACTATTATTCAGAAAATATTGTGAACCTATTACTGATCTTGGGGTTGTTCCCAATGAAGAAATGAAGAGAAAGTTGTTTAGTCAATTTCAGCCCCATATTGCTGCTGCACTGAATGAGATATTTAAGGTTTCAACTCAGCCTCCCGCTGAAGTTGAAGCTAGGGAGAGAAAGCCAAGGGGTAGCACAAGGAAATCCGGAGGTTATGAAGTTGTTGACCAGTTAGATTTTCACATGTCTACTTCTGCCAAGTATCTTCTTATTTCAGCATTCCTTGCTTCAAGAAATCCAGCTACCCTTGATGCATCATTGTTCGATTCTACTGGGGGTTCTAATAATCGAAAACGAAAGAGGAAGGTCTCTGAGAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTACTCATGAAGGGCCCCGGAACATTCGCAATGGAGAGGTTACTAGCCATATTCCAGTGTATTACGTCCGTGGCGGAAGATCCACTTGATGATGGGGAACAAGCACAGGATGGGTTAGGAATTCAAGATGGACATTGTGGGCTCATGTCTGATGTCCTCTTACAATTGACTAGTCTCTGTGGTGCAAATTTTATTGTTAAAGGAGGAAGCTGCCCACTGGAGGGCTCAACTCGCTATCGTTCTACATTTAGTGAAGATATGGCCCTGCAGGTAGCAAGGAGCATTAAGTTTCCTCTCTCAAAGTACTTGTACAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

539

Amino Acids

60.24

Weight (kDa)

8.54

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	61 - 203	1.5e-11	AAA ATPase domain
ATPase_2	PF01637	63 - 234	3.8e-06	ATPase domain predominantly from Archaea
ORC5_lid	PF21639	274 - 327	5.7e-11	ORC5, lid domain
ORC5_C	PF14630	378 - 536	2.4e-37	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	1558
AccBSI	CCGCTC	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	1136
AccII	CGCG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	1094
AciI	CCGC	4 cut(s)	230, 875, 1044, 1373
AclWI	GGATC	2 cut(s)	39, 1373
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	3 cut(s)	469, 1419, 1486
AcuI	CTGAAG	1 cut(s)	1068
AfaI	GTAC	4 cut(s)	398, 843, 1604, 1610
AfeI	AGCGCT	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	674, 1519, 1520
AflIII	ACRYGT	1 cut(s)	1131
AgsI	TTSAA	8 cut(s)	69, 83, 377, 388, 1032, 1055, 1179, 1424
AhlI	ACTAGT	2 cut(s)	287, 1469
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	7 cut(s)	159, 211, 342, 817, 1058, 1190, 1509
AluI	AGCT	7 cut(s)	159, 211, 342, 817, 1058, 1190, 1509
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	1261, 1478
Alw44I	GTGCAC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	39, 1373
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	1094
Aor51HI	AGCGCT	1 cut(s)	443
AoxI	GGCC	4 cut(s)	57, 848, 1312, 1560
ApaI	GGGCCC	1 cut(s)	1316
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	5 cut(s)	106, 342, 1001, 1004, 1509
ApoI	RAATTY	3 cut(s)	469, 1419, 1486
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	4 cut(s)	227, 1312, 1313, 1561
AsuC2I	CCSGG	1 cut(s)	1317
AsuHPI	GGTGA	2 cut(s)	395, 693
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	219, 1316
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	3 cut(s)	1316, 1443, 1526
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	5 cut(s)	118, 329, 988, 991, 1496
BccI	CCATC	4 cut(s)	463, 1385, 1403, 1421
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	1317
BcoDI	GTCTC	2 cut(s)	1261, 1478
BcuI	ACTAGT	2 cut(s)	287, 1469
BfaI	CTAG	8 cut(s)	177, 288, 432, 555, 888, 1059, 1343, 1470
BfmI	CTRYAG	2 cut(s)	1287, 1565
BfoI	RGCGCY	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	1558
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	5 cut(s)	107, 343, 1002, 1005, 1510
BlsI	GCNGC	5 cut(s)	108, 344, 1003, 1006, 1511
BmcAI	AGTACT	1 cut(s)	1604
Bme1390I	CCNGG	2 cut(s)	186, 1317
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	4 cut(s)	227, 1312, 1313, 1561
BmiI	GGNNCC	3 cut(s)	228, 1314, 1315
BmrFI	CCNGG	2 cut(s)	186, 1317
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	3 cut(s)	322, 1189, 1211
BmuI	ACTGGG	1 cut(s)	1230
BoxI	GACNNNNGTC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	1538
Bpu10I	CCTNAGC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	1317
BsaBI	GATNNNNATC	1 cut(s)	774
BsaI	GGTCTC	1 cut(s)	1261
BsaJI	CCNNGG	5 cut(s)	486, 669, 1073, 1315, 1368
BsaWI	WCCGGW	2 cut(s)	703, 1094
BsaXI	ACNNNNNCTCC	2 cut(s)	1024, 1054
Bsc4I	CCNNNNNNNGG	3 cut(s)	674, 1519, 1520
Bse1I	ACTGG	5 cut(s)	283, 1117, 1225, 1354, 1521
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	1335
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	1094
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	5 cut(s)	486, 669, 1073, 1315, 1368
BseGI	GGATG	3 cut(s)	775, 883, 1414
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	3 cut(s)	674, 1519, 1520
BseMI	GCAATG	1 cut(s)	1335
BseMII	CTCAG	4 cut(s)	524, 847, 1049, 1251
BseNI	ACTGG	5 cut(s)	283, 1117, 1225, 1354, 1521
BseSI	GKGCMC	2 cut(s)	219, 1316
BseXI	GCAGC	5 cut(s)	118, 329, 988, 991, 1496
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	59, 850, 1314, 1562
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	3 cut(s)	704, 1095, 1317
BslFI	GGGAC	2 cut(s)	528, 623
BslI	CCNNNNNNNGG	3 cut(s)	674, 1519, 1520
BsmAI	GTCTC	2 cut(s)	1261, 1478
BsmFI	GGGAC	2 cut(s)	528, 623
BsmI	GAATGC	2 cut(s)	418, 1166
BsnI	GGCC	4 cut(s)	59, 850, 1314, 1562
Bso31I	GGTCTC	1 cut(s)	1261
BsoBI	CYCGRG	1 cut(s)	668
Bsp120I	GGGCCC	1 cut(s)	1312
Bsp1286I	GDGCHC	4 cut(s)	219, 1316, 1443, 1526
Bsp13I	TCCGGA	1 cut(s)	1094
Bsp1407I	TGTACA	1 cut(s)	1608
Bsp143I	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
Bsp68I	TCGCGA	1 cut(s)	480
BspACI	CCGC	4 cut(s)	230, 875, 1044, 1373
BspANI	GGCC	4 cut(s)	59, 850, 1314, 1562
BspCNI	CTCAG	4 cut(s)	523, 846, 1048, 1252
BspEI	TCCGGA	1 cut(s)	1094
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	1305
BspLI	GGNNCC	3 cut(s)	228, 1314, 1315
BspMAI	CTGCAG	2 cut(s)	1291, 1569
BspMI	ACCTGC	1 cut(s)	1558
BspPI	GGATC	2 cut(s)	39, 1373
BspQI	GCTCTTC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	1261
BsrBI	CCGCTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	1335
BsrGI	TGTACA	1 cut(s)	1608
BsrI	ACTGG	5 cut(s)	283, 1117, 1225, 1354, 1521
BssECI	CCNNGG	5 cut(s)	486, 669, 1073, 1315, 1368
BssMI	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
BssT1I	CCWWGG	2 cut(s)	486, 1073
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	55, 277, 959
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstAUI	TGTACA	1 cut(s)	1608
BstDEI	CTNAG	6 cut(s)	338, 510, 833, 845, 1035, 1260
BstDSI	CCRYGG	1 cut(s)	1368
BstF5I	GGATG	3 cut(s)	775, 883, 1414
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	7 cut(s)	47, 169, 204, 570, 778, 937, 1381
BstMAI	GTCTC	2 cut(s)	1261, 1478
BstMBI	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
BstMWI	GCNNNNNNNGC	2 cut(s)	1172, 1530
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	1135
BstPAI	GACNNNNGTC	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	184, 1315
BstSFI	CTRYAG	2 cut(s)	1287, 1565
BstSLI	GKGCMC	2 cut(s)	219, 1316
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	5 cut(s)	118, 329, 988, 991, 1496
BstX2I	RGATCY	1 cut(s)	1378
BstYI	RGATCY	1 cut(s)	1378
Bsu36I	CCTNAGG	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	59, 850, 1314, 1562
BtgI	CCRYGG	1 cut(s)	1368
BtsCI	GGATG	3 cut(s)	775, 883, 1414
BtsIMutI	CAGTG	5 cut(s)	276, 841, 1007, 1361, 1514
BtuMI	TCGCGA	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	1558
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	1 cut(s)	1305
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	4 cut(s)	227, 1312, 1313, 1561
Csp6I	GTAC	4 cut(s)	397, 842, 1603, 1609
CviAII	CATG	4 cut(s)	244, 1132, 1306, 1444
CviQI	GTAC	4 cut(s)	397, 842, 1603, 1609
DdeI	CTNAG	6 cut(s)	338, 510, 833, 845, 1035, 1260
DpnI	GATC	7 cut(s)	46, 168, 203, 569, 777, 936, 1380
DpnII	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	55, 277, 959
EarI	CTCTTC	3 cut(s)	55, 277, 959
EciI	GGCGGA	1 cut(s)	1388
Eco130I	CCWWGG	2 cut(s)	486, 1073
Eco147I	AGGCCT	1 cut(s)	850
Eco24I	GRGCYC	3 cut(s)	1316, 1443, 1526
Eco31I	GGTCTC	1 cut(s)	1261
Eco47I	GGWCC	1 cut(s)	227
Eco47III	AGCGCT	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	1068
Eco81I	CCTNAGG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	668
EcoO109I	RGGNCCY	2 cut(s)	1312, 1313
EcoRI	GAATTC	1 cut(s)	1419
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	486, 1073
EcoT22I	ATGCAT	1 cut(s)	1204
EcoT38I	GRGCYC	3 cut(s)	1316, 1443, 1526
ErhI	CCWWGG	2 cut(s)	486, 1073
FaeI	CATG	4 cut(s)	247, 1135, 1309, 1447
FalI	AAGNNNNNCTT	2 cut(s)	1368, 1400
FaqI	GGGAC	2 cut(s)	528, 623
FatI	CATG	4 cut(s)	243, 1131, 1305, 1443
FauI	CCCGC	1 cut(s)	1051
FauNDI	CATATG	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	1136
Fnu4HI	GCNGC	5 cut(s)	107, 343, 1002, 1005, 1510
FokI	GGATG	3 cut(s)	782, 890, 1421
FriOI	GRGCYC	3 cut(s)	1316, 1443, 1526
Fsp4HI	GCNGC	5 cut(s)	107, 343, 1002, 1005, 1510
FspBI	CTAG	8 cut(s)	177, 288, 432, 555, 888, 1059, 1343, 1470
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	5 cut(s)	107, 343, 1002, 1005, 1510
GsuI	CTGGAG	1 cut(s)	1538
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	4 cut(s)	59, 850, 1314, 1562
HapII	CCGG	3 cut(s)	704, 1095, 1317
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	247, 1135, 1309, 1447
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	6 cut(s)	149, 366, 377, 388, 716, 1214
HpaII	CCGG	3 cut(s)	704, 1095, 1317
HphI	GGTGA	2 cut(s)	395, 693
Hpy166II	GTNNAC	5 cut(s)	217, 334, 923, 1114, 1137
Hpy188I	TCNGA	6 cut(s)	201, 460, 660, 911, 1261, 1450
Hpy188III	TCNNGA	8 cut(s)	479, 525, 546, 758, 1095, 1179, 1306, 1424
Hpy8I	GTNNAC	5 cut(s)	217, 334, 923, 1114, 1137
HpyAV	CCTTC	5 cut(s)	137, 410, 1246, 1273, 1303
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	1364
HpyCH4V	TGCA	8 cut(s)	217, 416, 437, 1007, 1202, 1289, 1484, 1567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1172, 1530
HpyF3I	CTNAG	6 cut(s)	338, 510, 833, 845, 1035, 1260
HpySE526I	ACGT	1 cut(s)	1364
Hsp92II	CATG	4 cut(s)	247, 1135, 1309, 1447
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	1094
Kzo9I	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	592, 1578
Lsp1109I	GCAGC	5 cut(s)	118, 329, 988, 991, 1496
LweI	GCATC	3 cut(s)	322, 1189, 1211
MaeI	CTAG	8 cut(s)	177, 288, 432, 555, 888, 1059, 1343, 1470
MaeII	ACGT	1 cut(s)	1364
MaeIII	GTNAC	2 cut(s)	627, 1338
MalI	GATC	7 cut(s)	46, 168, 203, 569, 777, 936, 1380
MbiI	CCGCTC	1 cut(s)	875
MboI	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
MfeI	CAATTG	2 cut(s)	392, 1463
MflI	RGATCY	1 cut(s)	1378
MhlI	GDGCHC	4 cut(s)	219, 1316, 1443, 1526
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	158, 710
Mox20I	TGGCCA	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	1204
MroI	TCCGGA	1 cut(s)	1094
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	7 cut(s)	6, 318, 642, 791, 1023, 1497, 1584
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	3 cut(s)	704, 1095, 1317
MspR9I	CCNGG	2 cut(s)	186, 1317
MunI	CAATTG	2 cut(s)	392, 1463
Mva1269I	GAATGC	2 cut(s)	418, 1166
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	1172, 1530
NciI	CCSGG	1 cut(s)	1317
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
NlaIII	CATG	4 cut(s)	247, 1135, 1309, 1447
NlaIV	GGNNCC	3 cut(s)	228, 1314, 1315
NruI	TCGCGA	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	1204
NspI	RCATGY	1 cut(s)	1135
PagI	TCATGA	1 cut(s)	1305
PceI	AGGCCT	1 cut(s)	850
PciI	ACATGT	1 cut(s)	1131
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	2 cut(s)	418, 1166
PfeI	GAWTC	4 cut(s)	366, 377, 388, 1214
PkrI	GCNGC	5 cut(s)	108, 344, 1003, 1006, 1511
PleI	GAGTC	2 cut(s)	157, 710
PpsI	GAGTC	2 cut(s)	157, 710
PscI	ACATGT	1 cut(s)	1131
PshAI	GACNNNNGTC	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	228, 1314, 1315
PspOMI	GGGCCC	1 cut(s)	1312
PspPI	GGNCC	4 cut(s)	227, 1312, 1313, 1561
PsrI	GAACNNNNNNTAC	2 cut(s)	1284, 1316
PstI	CTGCAG	2 cut(s)	1291, 1569
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	1378
RruI	TCGCGA	1 cut(s)	480
RsaI	GTAC	4 cut(s)	398, 843, 1604, 1610
RsaNI	GTAC	4 cut(s)	397, 842, 1603, 1609
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	7 cut(s)	6, 318, 642, 791, 1023, 1497, 1584
SatI	GCNGC	5 cut(s)	107, 343, 1002, 1005, 1510
Sau3AI	GATC	7 cut(s)	44, 166, 201, 567, 775, 934, 1378
Sau96I	GGNCC	4 cut(s)	227, 1312, 1313, 1561
SbfI	CCTGCAGG	1 cut(s)	1569
ScaI	AGTACT	1 cut(s)	1604
SchI	GAGTC	2 cut(s)	158, 710
ScrFI	CCNGG	2 cut(s)	186, 1317
SdaI	CCTGCAGG	1 cut(s)	1569
SduI	GDGCHC	4 cut(s)	219, 1316, 1443, 1526
SfaNI	GCATC	3 cut(s)	322, 1189, 1211
SfcI	CTRYAG	2 cut(s)	1287, 1565
SinI	GGWCC	1 cut(s)	227
SpeI	ACTAGT	2 cut(s)	287, 1469
Sse8387I	CCTGCAGG	1 cut(s)	1569
SseBI	AGGCCT	1 cut(s)	850
SsiI	CCGC	4 cut(s)	230, 875, 1044, 1373
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	8 cut(s)	177, 288, 432, 555, 888, 1059, 1343, 1470
StuI	AGGCCT	1 cut(s)	850
StyD4I	CCNGG	2 cut(s)	184, 1315
StyI	CCWWGG	2 cut(s)	486, 1073
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	1367
TaqI	TCGA	3 cut(s)	364, 1212, 1237
TaqII	GACCGA	1 cut(s)	665
TatI	WGTACW	3 cut(s)	841, 1602, 1608
TfiI	GAWTC	4 cut(s)	366, 377, 388, 1214
Tru1I	TTAA	7 cut(s)	6, 318, 642, 791, 1023, 1497, 1584
Tru9I	TTAA	7 cut(s)	6, 318, 642, 791, 1023, 1497, 1584
TscAI	CASTG	5 cut(s)	283, 841, 1014, 1361, 1521
TseI	GCWGC	5 cut(s)	106, 342, 1001, 1004, 1509
TspDTI	ATGAA	6 cut(s)	676, 894, 969, 977, 1119, 1322
TspGWI	ACGGA	1 cut(s)	1357
TspRI	CASTG	5 cut(s)	283, 841, 1014, 1361, 1521
VneI	GTGCAC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	3 cut(s)	469, 1419, 1486
XceI	RCATGY	1 cut(s)	1135
XmiI	GTMKAC	1 cut(s)	1136
XspI	CTAG	8 cut(s)	177, 288, 432, 555, 888, 1059, 1343, 1470
ZrmI	AGTACT	1 cut(s)	1604
Zsp2I	ATGCAT	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.