Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009869.1

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

36811 .. 38758

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009869.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgtttgaatccatattaaatcaattgttccttcaccgaaagaaagcagaaaatggttattctagtgcaaagcgctgtgaaaggccatctgattttgtgaattttcttcgcgaagccttggttagcattattggtaatcctcagggacaaaagtcaggattgagtagcaaaaggtcaggaaaggctaatggaaatatgatctacttgatttttgacaatttggagcgtgtcaaagggtgggacaaaggttctactgtgttatctttgttgtttaatctctatgacactctgaaaatgcccgaggtcggtcttatcttcatcagcaatacctcaccggatacatacgactcaaatatgggttatgttgagcctaaccctctatatcttcctgattatacagatgatgatcttggtcaaatcttaatgagacaccaagcaaacaaaaagctttacacctcttttctcagtgttgtactaaggcctttcagtagaattaccagacgagtggatgaattgtctagtgcattttcactattattcagaaaatattgtgaacctattactgatcttggggttgttcccaatgaagagatgaagagaaagttgtttagtcaatttcagccccatattgctcctgcactgaatgagatatttaaggtttcaactcagccttccactgaagttgaagctagggagagaaagccaaaggttagcacaaggaaatccagaggttatgaagttgctgaccagttagattttcacatgtctacctctgccaagtatcttctaatttcagcattccttgcttcaagaaatccagctacccttgatgcatcattgttcgattctactggaggttctaataatcgaaaacgaaagaggaaggtctctgagaagtcaatggaacagaaggaaactgcagaacaggaattactcatgaagggccccggaacattcccaatggagaggttactagccatattccagtgtattacatctgtggcggaagatccacttgatgatgaggaacaagcgcaggatgggttagggattcaagatgggcattgtgggctcatgtctgatgtcctcttacaattgactagtctctgtggtgcaaattttattgtcaaaggaggaagctgcccactcgagggctcaactcgctatcgttctacagttagtgaagatatggccctgcaggtagcaaggagcattaagtttcctctctcaaagtacttgtacagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

416

Amino Acids

46.88

Weight (kDa)

8.7

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1189
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	1004
AclWI	GGATC	1 cut(s)	1004
AcsI	RAATTY	2 cut(s)	100, 1117
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	3 cut(s)	474, 1235, 1241
AfeI	AGCGCT	1 cut(s)	74
AfiI	CCNNNNNNNGG	3 cut(s)	305, 1150, 1151
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	5 cut(s)	8, 663, 686, 810, 1055
AhlI	ACTAGT	1 cut(s)	1100
AluBI	AGCT	4 cut(s)	448, 689, 821, 1140
AluI	AGCT	4 cut(s)	448, 689, 821, 1140
Alw26I	GTCTC	3 cut(s)	421, 892, 1109
AlwI	GGATC	1 cut(s)	1004
Ama87I	CYCGRG	2 cut(s)	299, 1148
Aor51HI	AGCGCT	1 cut(s)	74
AoxI	GGCC	4 cut(s)	83, 479, 943, 1191
ApaI	GGGCCC	1 cut(s)	947
ApeKI	GCWGC	1 cut(s)	1140
ApoI	RAATTY	2 cut(s)	100, 1117
AspLEI	GCGC	2 cut(s)	75, 1036
AspS9I	GGNCC	3 cut(s)	943, 944, 1192
AsuC2I	CCSGG	1 cut(s)	948
AsuHPI	GGTGA	2 cut(s)	26, 324
AvaI	CYCGRG	2 cut(s)	299, 1148
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	947
BanII	GRGCYC	3 cut(s)	947, 1074, 1157
BbvI	GCAGC	1 cut(s)	1127
BccI	CCATC	3 cut(s)	94, 1034, 1052
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	948
BcoDI	GTCTC	3 cut(s)	421, 892, 1109
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	5 cut(s)	63, 519, 690, 974, 1101
BfmI	CTRYAG	3 cut(s)	918, 1173, 1196
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	1141
BlsI	GCNGC	1 cut(s)	1142
BmcAI	AGTACT	1 cut(s)	1235
Bme1390I	CCNGG	1 cut(s)	948
BmeT110I	CYCGRG	2 cut(s)	299, 1148
BmgT120I	GGNCC	3 cut(s)	943, 944, 1192
BmiI	GGNNCC	2 cut(s)	945, 946
BmrFI	CCNGG	1 cut(s)	948
BmsI	GCATC	2 cut(s)	820, 842
BoxI	GACNNNNGTC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	873
BpuMI	CCSGG	1 cut(s)	948
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	3 cut(s)	117, 300, 946
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 1150, 1151
Bse1I	ACTGG	3 cut(s)	748, 856, 985
Bse21I	CCTNAGG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	117, 300, 946
BseGI	GGATG	2 cut(s)	514, 1045
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	305, 1150, 1151
BseMII	CTCAG	4 cut(s)	155, 478, 680, 882
BseNI	ACTGG	3 cut(s)	748, 856, 985
BseSI	GKGCMC	1 cut(s)	947
BseXI	GCAGC	1 cut(s)	1127
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	85, 481, 945, 1193
BsiHKCI	CYCGRG	2 cut(s)	299, 1148
BsiSI	CCGG	2 cut(s)	335, 948
BslFI	GGGAC	2 cut(s)	159, 254
BslI	CCNNNNNNNGG	3 cut(s)	305, 1150, 1151
BsmAI	GTCTC	3 cut(s)	421, 892, 1109
BsmFI	GGGAC	2 cut(s)	159, 254
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	4 cut(s)	85, 481, 945, 1193
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	2 cut(s)	299, 1148
Bsp120I	GGGCCC	1 cut(s)	943
Bsp1286I	GDGCHC	3 cut(s)	947, 1074, 1157
Bsp1407I	TGTACA	1 cut(s)	1239
Bsp143I	GATC	4 cut(s)	198, 406, 565, 1009
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	1 cut(s)	1004
BspANI	GGCC	4 cut(s)	85, 481, 945, 1193
BspCNI	CTCAG	4 cut(s)	154, 477, 679, 883
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	945, 946
BspMAI	CTGCAG	2 cut(s)	922, 1200
BspMI	ACCTGC	1 cut(s)	1189
BspPI	GGATC	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	892
BsrGI	TGTACA	1 cut(s)	1239
BsrI	ACTGG	3 cut(s)	748, 856, 985
BssECI	CCNNGG	3 cut(s)	117, 300, 946
BssMI	GATC	4 cut(s)	198, 406, 565, 1009
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	256, 1177
Bst6I	CTCTTC	2 cut(s)	582, 590
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	1239
BstDEI	CTNAG	5 cut(s)	141, 464, 476, 666, 891
BstF5I	GGATG	2 cut(s)	514, 1045
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 1036
BstKTI	GATC	4 cut(s)	201, 409, 568, 1012
BstMAI	GTCTC	3 cut(s)	421, 892, 1109
BstMBI	GATC	4 cut(s)	198, 406, 565, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	803, 1069, 1161
BstNSI	RCATGY	1 cut(s)	766
BstPAI	GACNNNNGTC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	946
BstSFI	CTRYAG	3 cut(s)	918, 1173, 1196
BstSLI	GKGCMC	1 cut(s)	947
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	1127
BstX2I	RGATCY	1 cut(s)	1009
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	1009
Bsu36I	CCTNAGG	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	85, 481, 945, 1193
BtsCI	GGATG	2 cut(s)	514, 1045
BtsIMutI	CAGTG	4 cut(s)	472, 638, 675, 992
BtuMI	TCGCGA	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	1189
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	2 cut(s)	75, 1036
Cfr13I	GGNCC	3 cut(s)	943, 944, 1192
Csp6I	GTAC	3 cut(s)	473, 1234, 1240
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviAII	CATG	3 cut(s)	763, 937, 1075
CviQI	GTAC	3 cut(s)	473, 1234, 1240
DdeI	CTNAG	5 cut(s)	141, 464, 476, 666, 891
DpnI	GATC	4 cut(s)	200, 408, 567, 1011
DpnII	GATC	4 cut(s)	198, 406, 565, 1009
Eam1104I	CTCTTC	2 cut(s)	582, 590
EarI	CTCTTC	2 cut(s)	582, 590
EciI	GGCGGA	1 cut(s)	1019
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	947, 1074, 1157
Eco31I	GGTCTC	1 cut(s)	892
Eco47III	AGCGCT	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	299, 1148
EcoO109I	RGGNCCY	2 cut(s)	943, 944
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	835
EcoT38I	GRGCYC	3 cut(s)	947, 1074, 1157
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	766, 940, 1078
FalI	AAGNNNNNCTT	2 cut(s)	999, 1031
FaqI	GGGAC	2 cut(s)	159, 254
FatI	CATG	3 cut(s)	762, 936, 1074
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	1 cut(s)	1141
FokI	GGATG	2 cut(s)	521, 1052
FriOI	GRGCYC	3 cut(s)	947, 1074, 1157
Fsp4HI	GCNGC	1 cut(s)	1141
FspBI	CTAG	5 cut(s)	63, 519, 690, 974, 1101
GlaI	GCGC	2 cut(s)	74, 1035
GluI	GCNGC	1 cut(s)	1141
GsuI	CTGGAG	1 cut(s)	873
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	4 cut(s)	85, 481, 945, 1193
HapII	CCGG	2 cut(s)	335, 948
HhaI	GCGC	2 cut(s)	75, 1036
Hin1II	CATG	3 cut(s)	766, 940, 1078
Hin6I	GCGC	2 cut(s)	73, 1034
HinP1I	GCGC	2 cut(s)	73, 1034
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	8, 347, 845, 1051
HpaII	CCGG	2 cut(s)	335, 948
HphI	GGTGA	2 cut(s)	26, 324
Hpy166II	GTNNAC	2 cut(s)	554, 768
Hpy188I	TCNGA	5 cut(s)	91, 291, 542, 892, 1081
Hpy188III	TCNNGA	8 cut(s)	110, 156, 177, 389, 726, 810, 937, 1055
Hpy8I	GTNNAC	2 cut(s)	554, 768
HpyAV	CCTTC	5 cut(s)	41, 681, 877, 904, 934
HpyCH4III	ACNGT	2 cut(s)	256, 1177
HpyCH4V	TGCA	7 cut(s)	68, 524, 638, 833, 920, 1115, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	803, 1069, 1161
HpyF3I	CTNAG	5 cut(s)	141, 464, 476, 666, 891
Hsp92II	CATG	3 cut(s)	766, 940, 1078
HspAI	GCGC	2 cut(s)	73, 1034
Kzo9I	GATC	4 cut(s)	198, 406, 565, 1009
LmnI	GCTCC	3 cut(s)	223, 637, 1209
Lsp1109I	GCAGC	1 cut(s)	1127
LweI	GCATC	2 cut(s)	820, 842
MaeI	CTAG	5 cut(s)	63, 519, 690, 974, 1101
MaeIII	GTNAC	1 cut(s)	969
MalI	GATC	4 cut(s)	200, 408, 567, 1011
MboI	GATC	4 cut(s)	198, 406, 565, 1009
MboII	GAAGA	8 cut(s)	98, 307, 377, 599, 607, 776, 1019, 1196
MfeI	CAATTG	2 cut(s)	23, 1094
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	3 cut(s)	947, 1074, 1157
MlyI	GAGTC	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	5 cut(s)	17, 273, 422, 654, 1215
MspI	CCGG	2 cut(s)	335, 948
MspR9I	CCNGG	1 cut(s)	948
MunI	CAATTG	2 cut(s)	23, 1094
Mva1269I	GAATGC	1 cut(s)	797
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	803, 1069, 1161
NciI	CCSGG	1 cut(s)	948
NdeII	GATC	4 cut(s)	198, 406, 565, 1009
NlaIII	CATG	3 cut(s)	766, 940, 1078
NlaIV	GGNNCC	2 cut(s)	945, 946
NruI	TCGCGA	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	1 cut(s)	766
PaeR7I	CTCGAG	1 cut(s)	1148
PagI	TCATGA	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	762
PctI	GAATGC	1 cut(s)	797
PfeI	GAWTC	3 cut(s)	8, 845, 1051
PkrI	GCNGC	1 cut(s)	1142
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PscI	ACATGT	1 cut(s)	762
PshAI	GACNNNNGTC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	945, 946
PspOMI	GGGCCC	1 cut(s)	943
PspPI	GGNCC	3 cut(s)	943, 944, 1192
PspXI	VCTCGAGB	1 cut(s)	1148
PsrI	GAACNNNNNNTAC	2 cut(s)	915, 947
PstI	CTGCAG	2 cut(s)	922, 1200
PsuI	RGATCY	1 cut(s)	1009
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	3 cut(s)	474, 1235, 1241
RsaNI	GTAC	3 cut(s)	473, 1234, 1240
SaqAI	TTAA	5 cut(s)	17, 273, 422, 654, 1215
SatI	GCNGC	1 cut(s)	1141
Sau3AI	GATC	4 cut(s)	198, 406, 565, 1009
Sau96I	GGNCC	3 cut(s)	943, 944, 1192
SbfI	CCTGCAGG	1 cut(s)	1200
ScaI	AGTACT	1 cut(s)	1235
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	948
SdaI	CCTGCAGG	1 cut(s)	1200
SduI	GDGCHC	3 cut(s)	947, 1074, 1157
SfaNI	GCATC	2 cut(s)	820, 842
SfcI	CTRYAG	3 cut(s)	918, 1173, 1196
Sfr274I	CTCGAG	1 cut(s)	1148
SlaI	CTCGAG	1 cut(s)	1148
SmlI	CTYRAG	1 cut(s)	1148
SmoI	CTYRAG	1 cut(s)	1148
SpeI	ACTAGT	1 cut(s)	1100
Sse8387I	CCTGCAGG	1 cut(s)	1200
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	1004
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	5 cut(s)	63, 519, 690, 974, 1101
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	946
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	256, 1177
TaqI	TCGA	3 cut(s)	843, 868, 1149
TaqII	GACCGA	1 cut(s)	296
TatI	WGTACW	3 cut(s)	472, 1233, 1239
TfiI	GAWTC	3 cut(s)	8, 845, 1051
Tru1I	TTAA	5 cut(s)	17, 273, 422, 654, 1215
Tru9I	TTAA	5 cut(s)	17, 273, 422, 654, 1215
TscAI	CASTG	4 cut(s)	472, 645, 682, 992
TseI	GCWGC	1 cut(s)	1140
TspDTI	ATGAA	6 cut(s)	307, 525, 600, 608, 750, 953
TspRI	CASTG	4 cut(s)	472, 645, 682, 992
XapI	RAATTY	2 cut(s)	100, 1117
XceI	RCATGY	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	1148
XmiI	GTMKAC	1 cut(s)	767
XspI	CTAG	5 cut(s)	63, 519, 690, 974, 1101
ZrmI	AGTACT	1 cut(s)	1235
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.