Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Reverse (-)

35635983 .. 35638740

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACCAAGCAGCACGCTAACTGGTCCCCCTACGACAACAATGGCGGATCCGTGGTGGCGATTGCCGGAGCTGATTACTGTGTGATTGCCGCCGATACTCGGATGTCGACCGGTTACAGTATTCTCACCCGCGGCTACTCCAAAATCAGCAAATTAGCGGACAAAGCTTTTATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCTTTACAGAAGCATTTGACAGCTAAGCACTTGATTTATCAGCATCAGCATAACAAACAAATGAGCTGCCCTGCAATGGCTCAACTACTTTCCAATACTCTTTACTACAAACGCTTCTTTCCCTATTACGCCTTTAATGTTTTGGGTGGTCTAGACACTGAAGGGAAGGGTTGTGTCTTCACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGTGCCCAAGGTTCTGGTTCCACACTCATCATGCCTTTCTTGGATAACCAACTGAAGTCTCCCAGTCCTCTCTTGTTGCCTGCCGTGGATGCTGTAACACCACTTTCAGAAGGAGAAGCAATTGATTTGGTCAAAACTGTTTTTGCATCTGCCACTGAGAGGGATATCTACACTGGAGACAGGCTTGAAATTTATGTCCTAAATGCTCATGGCACTCATCATGAATACATGGAACTGAGGAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

223

Amino Acids

24.56

Weight (kDa)

6.7

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	13 - 207	4e-36	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	1 cut(s)	132
AciI	CCGC	5 cut(s)	45, 90, 130, 132, 158
AclWI	GGATC	2 cut(s)	42, 55
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	2 cut(s)	384, 497
AfiI	CCNNNNNNNGG	4 cut(s)	99, 280, 411, 582
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	191, 611
AluBI	AGCT	6 cut(s)	71, 167, 194, 206, 227, 270
AluI	AGCT	6 cut(s)	71, 167, 194, 206, 227, 270
Alw26I	GTCTC	2 cut(s)	486, 594
AlwI	GGATC	2 cut(s)	42, 55
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	10, 270
ApoI	RAATTY	1 cut(s)	612
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	22, 257
BceAI	ACGGC	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	486, 594
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	4 cut(s)	11, 90, 133, 271
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	4 cut(s)	12, 91, 134, 272
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	4 cut(s)	26, 49, 403, 442
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	4 cut(s)	256, 382, 502, 578
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	51, 130, 430, 507
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 280, 411, 582
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	26, 486, 601
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	51, 130, 430, 507
BseGI	GGATG	2 cut(s)	108, 517
BseLI	CCNNNNNNNGG	4 cut(s)	99, 280, 411, 582
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	570, 650
BseNI	ACTGG	3 cut(s)	26, 486, 601
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	22, 257
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	66, 111
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	99, 280, 411, 582
BsmAI	GTCTC	2 cut(s)	486, 594
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	47
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	5 cut(s)	45, 90, 130, 132, 158
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	571, 651
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	4 cut(s)	26, 49, 403, 442
BspPI	GGATC	2 cut(s)	42, 55
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	26, 486, 601
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	51, 130, 430, 507
BssMI	GATC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	80, 119, 562
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	15, 504
BstDEI	CTNAG	3 cut(s)	228, 579, 659
BstDSI	CCRYGG	3 cut(s)	51, 130, 507
BstENI	CCTNNNNNAGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	108, 517
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	2 cut(s)	486, 594
BstMBI	GATC	1 cut(s)	47
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 512
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	22, 257
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	3 cut(s)	51, 130, 507
BtsCI	GGATG	2 cut(s)	108, 517
BtsIMutI	CAGTG	3 cut(s)	360, 576, 594
Cac8I	GCNNGC	2 cut(s)	15, 504
CciI	TCATGA	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	24
Cfr42I	CCGCGG	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	4 cut(s)	454, 632, 644, 652
DdeI	CTNAG	3 cut(s)	228, 579, 659
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	384, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	4 cut(s)	457, 635, 647, 655
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	4 cut(s)	453, 631, 643, 651
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	4 cut(s)	11, 90, 133, 271
FokI	GGATG	2 cut(s)	115, 524
Fsp4HI	GCNGC	4 cut(s)	11, 90, 133, 271
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	4 cut(s)	11, 90, 133, 271
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	66, 111
Hin1II	CATG	4 cut(s)	457, 635, 647, 655
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	165, 204
HpaII	CCGG	2 cut(s)	66, 111
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	102, 532
Hpy188III	TCNNGA	2 cut(s)	356, 644
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	359, 364, 527
HpyCH4III	ACNGT	3 cut(s)	80, 119, 562
HpyCH4V	TGCA	2 cut(s)	278, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 512
HpyF3I	CTNAG	3 cut(s)	228, 579, 659
Hsp92II	CATG	4 cut(s)	457, 635, 647, 655
KspI	CCGCGG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	22, 257
LweI	GCATC	4 cut(s)	256, 382, 502, 578
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	113, 517
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	2 cut(s)	171, 373
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	3 cut(s)	152, 543, 612
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	187, 405, 501, 576, 654
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	2 cut(s)	66, 111
MunI	CAATTG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 512
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	457, 635, 647, 655
NlaIV	GGNNCC	4 cut(s)	26, 49, 403, 442
PagI	TCATGA	1 cut(s)	643
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	12, 91, 134, 272
PspN4I	GGNNCC	4 cut(s)	26, 49, 403, 442
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	11, 90, 133, 271
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	7 cut(s)	73, 169, 196, 208, 229, 272, 436
SfaNI	GCATC	4 cut(s)	256, 382, 502, 578
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	152, 543, 612
SsiI	CCGC	5 cut(s)	45, 90, 130, 132, 158
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	80, 119, 562
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	152, 543, 612
TauI	GCSGC	2 cut(s)	92, 135
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	3 cut(s)	367, 583, 601
TseI	GCWGC	2 cut(s)	10, 270
TspDTI	ATGAA	1 cut(s)	660
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	367, 583, 601
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	409
XapI	RAATTY	1 cut(s)	612
XbaI	TCTAGA	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.