Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

71528999 .. 71535846

Gene Structure 6848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG538100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGAAGGAGTTGGATAGAGCCGTCCGATTATTTGATAGTCTGATCATGCGGCTGACATTAGATGACCGAAGCTTCTTCCCCTTCAGGCTAGAATTGTGGGGAGACATGGAGTCAGAGACTATGCTCTGTACCACAGATCAATGTGTTGAACAAGAGCCACAGCACACACATATTGACCGGAATGAATTCTCACAGAGAAGGCACACGAAGCAGGAGGAGGACGAGATTCTCATATGTGAATGCAAGTGTGATGAAAAGGATCTTGAAAGTGCATGTGGAGAATGGTGCTTGAATGTGTTGACCAGCACGCAATGCACTCCTGGATATTGCCCTTGTGGTGTCTATTGTAAGAATCAGAATTCAGACATGGTTAAGGAAGAAAGGCCACAAATTACAAGGAGAGCAACCAGATCCTCCGCTTTGGCTAAAAGTGTAGTTGAAGAAACAGATACAAGCAGTCAGCACCCATATGATGCTTCTGCGAGTTCAGACATTATTAAAGAAGAAAGCCCACAAATTTCAAGGAGAACAACCCGATCCTCCTTTTTGGCCAAATGTTCAAACAATGTAGTTGAAGAAACAGATGCAAATAGTCAGCAGCAACCGACTTTAGATGACCTTGTGATTGGAGAAGGAGAGTCCTTTAGCTTCGATGATCTGTTGTCTAGTTTTCCTGGTAAAGAAAGTCAGATCAAAGAGCTTGTGCACCTTTTGGGTCCACAGAACTCTCCCATGCTTCCTATATTTATATATGGAGGCTCTTCCACTGGAAAAACCAGTATTGTTCTACAAACATTTAGGCATCTTAAACGACCTTTTGTTTACTCAAGCTGCCTTACCTGTTATAATCCTCGAATCTTGTTTGAATCCATATTAAATCAATTGTTCCTTCACCGAAAGAAAGCAGAAAATGGTTATTCTAGTGCAAAGCGCTGTGAAAGGCCATCTGAGTTTGTGAATTTTCTTCGCGAAGCCTTGGTTAGCATTATTGGTAATCCTCAGGGACAAAAGTCAGGATTGAGTAGCAAAAGGTCAGGAAAGGCTAATGGAAATATGATCTACTTGATTTTTGACAATTTGGAGCGTGTCAAAGGGTGGGACAAAGGTTCTACTGTGTTACCTTTGTTGTTTAATCTCTATGACACTCTGAAAATGCCCGAGGTCGGTCTTATCTTCATCAGCAATACCTCACCGGATACATACGACTCAAATATGGGTTATGTTGAGCCTAACCCTCTATATCTTCCTGATTATACAGATGATGATCTTGGTCAAATCTTAATGAGACACCAAGCAAACAAAAAGCTTTACACCTCTTTTCTCAGTGTTGTACTAAGGCCTTTCAGTAGAATTACCAGACGAGTGGATGAATTGTCTAGTGCATTTTCACTATTATTCAGAAAATATTGTGAACCTATTACTGATCTTGGGGTTGTTCCCAATGAAGAAATGAAGAGAAAGTTGTTTAGTCAATTTCAGCCTCATATTGCTCCTGCACTGAATGAGATATTTAAGGTTTCAACTCAGCCTTCCACTGAAGTTGAAGCTAGGGAGAGAAAGCCAAAGGTTAGCACAAGGAAATCCAGAGGTTATGAAGTTGTTGACCAGTTAGATTTTCACATGTCTACCTCTGCCAAGTATCTTCTAATTTCAGCATTCCTTGCTTCAAGAAATCCAGCTACCCTTGATGCATCATTGTTCGATTCTACTGGAGGTTCTAATAATCGAAAACGAAAGAGGAAGGTCTCTGAGAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTACTCATGAAGGGCCCCGGAACATTCCCAATGGAGAGGTTACTAGCCATATTCCAGTGTATTACATCTGTGGCGGAAGATCCACTTGATGATGAGGAACAAGCGCAGGATGGGTTAGGGATTCAAGATGGGCATTGTGGGCTCATGTCTGATGTCCTCTTACAATTGACTAGTCTCTGTGGTGCAAATTTTATTGTCAAAGGAGGAAGCTGCCCACTCGAGGGCTCAACTTGCTATCGTTCTACAGTTAGTGAAGATATGGCCCTGCAGGTAGCAAGGAGCATTAAGTTTCCTCTCTCAAAGTACTTGTACAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

702

Amino Acids

79.37

Weight (kDa)

5.77

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AWS	PF17907	87 - 119	3.8e-09	AWS domain
AAA_16	PF13191	224 - 385	4.2e-11	AAA ATPase domain
ORC5_lid	PF21639	437 - 490	1.8e-11	ORC5, lid domain
ORC5_C	PF14630	541 - 699	9.1e-38	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	2047
AccI	GTMKAC	1 cut(s)	1625
AccII	CGCG	1 cut(s)	969
AciI	CCGC	3 cut(s)	49, 417, 1862
AclWI	GGATC	4 cut(s)	267, 405, 531, 1862
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	5 cut(s)	185, 358, 516, 958, 1975
AcuI	CTGAAG	2 cut(s)	67, 1557
AfaI	GTAC	4 cut(s)	130, 1332, 2093, 2099
AfeI	AGCGCT	1 cut(s)	932
AfiI	CCNNNNNNNGG	3 cut(s)	1163, 2008, 2009
AflIII	ACRYGT	1 cut(s)	1620
AhdI	GACNNNNNGTC	1 cut(s)	109
AhlI	ACTAGT	1 cut(s)	1958
AjnI	CCWGG	2 cut(s)	319, 673
AluBI	AGCT	8 cut(s)	72, 648, 700, 831, 1306, 1547, 1679, 1998
AluI	AGCT	8 cut(s)	72, 648, 700, 831, 1306, 1547, 1679, 1998
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	5 cut(s)	96, 110, 1279, 1750, 1967
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	4 cut(s)	267, 405, 531, 1862
Ama87I	CYCGRG	2 cut(s)	1157, 2006
Aor51HI	AGCGCT	1 cut(s)	932
AoxI	GGCC	6 cut(s)	383, 549, 941, 1337, 1801, 2049
ApaI	GGGCCC	1 cut(s)	1805
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	3 cut(s)	598, 831, 1998
ApoI	RAATTY	5 cut(s)	185, 358, 516, 958, 1975
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	933, 1894
AspS9I	GGNCC	4 cut(s)	716, 1801, 1802, 2050
AsuC2I	CCSGG	1 cut(s)	1806
AsuHPI	GGTGA	2 cut(s)	884, 1182
AvaI	CYCGRG	2 cut(s)	1157, 2006
AvaII	GGWCC	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	999
BaeGI	GKGCMC	2 cut(s)	708, 1805
BalI	TGGCCA	1 cut(s)	551
BanII	GRGCYC	3 cut(s)	1805, 1932, 2015
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	3 cut(s)	610, 818, 1985
BccI	CCATC	3 cut(s)	952, 1892, 1910
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	2 cut(s)	321, 675
BciVI	GTATCC	1 cut(s)	1189
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	1806
BcoDI	GTCTC	5 cut(s)	96, 110, 1279, 1750, 1967
BcuI	ACTAGT	1 cut(s)	1958
BfaI	CTAG	7 cut(s)	89, 666, 921, 1377, 1548, 1832, 1959
BfmI	CTRYAG	3 cut(s)	1776, 2031, 2054
BfoI	RGCGCY	1 cut(s)	934
BfuAI	ACCTGC	1 cut(s)	2047
BfuI	GTATCC	1 cut(s)	1189
BisI	GCNGC	4 cut(s)	50, 599, 832, 1999
BlsI	GCNGC	4 cut(s)	51, 600, 833, 2000
BmcAI	AGTACT	1 cut(s)	2093
Bme1390I	CCNGG	3 cut(s)	321, 675, 1806
Bme18I	GGWCC	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmeT110I	CYCGRG	2 cut(s)	1157, 2006
BmgT120I	GGNCC	4 cut(s)	716, 1801, 1802, 2050
BmiI	GGNNCC	3 cut(s)	717, 1803, 1804
BmrFI	CCNGG	3 cut(s)	321, 675, 1806
BmsI	GCATC	5 cut(s)	463, 574, 811, 1678, 1700
BoxI	GACNNNNGTC	1 cut(s)	1009
BpmI	CTGGAG	1 cut(s)	1731
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	1 cut(s)	1806
BsaBI	GATNNNNATC	1 cut(s)	1263
BsaI	GGTCTC	1 cut(s)	1750
BsaJI	CCNNGG	3 cut(s)	975, 1158, 1804
BsaWI	WCCGGW	2 cut(s)	177, 1192
Bsc4I	CCNNNNNNNGG	3 cut(s)	1163, 2008, 2009
Bse1I	ACTGG	5 cut(s)	772, 777, 1606, 1714, 1843
Bse21I	CCTNAGG	1 cut(s)	999
Bse3DI	GCAATG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	1263
BseBI	CCWGG	2 cut(s)	321, 675
BseDI	CCNNGG	3 cut(s)	975, 1158, 1804
BseGI	GGATG	2 cut(s)	1372, 1903
BseJI	GATNNNNATC	1 cut(s)	1263
BseLI	CCNNNNNNNGG	3 cut(s)	1163, 2008, 2009
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	5 cut(s)	939, 1013, 1336, 1538, 1740
BseNI	ACTGG	5 cut(s)	772, 777, 1606, 1714, 1843
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	2 cut(s)	708, 1805
BseXI	GCAGC	3 cut(s)	610, 818, 1985
BsgI	GTGCAG	1 cut(s)	1479
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	6 cut(s)	385, 551, 943, 1339, 1803, 2051
BsiHKAI	GWGCWC	1 cut(s)	708
BsiHKCI	CYCGRG	2 cut(s)	1157, 2006
BsiSI	CCGG	3 cut(s)	178, 1193, 1806
BslFI	GGGAC	2 cut(s)	1017, 1112
BslI	CCNNNNNNNGG	3 cut(s)	1163, 2008, 2009
BsmAI	GTCTC	5 cut(s)	96, 110, 1279, 1750, 1967
BsmFI	GGGAC	2 cut(s)	1017, 1112
BsmI	GAATGC	2 cut(s)	245, 1655
BsnI	GGCC	6 cut(s)	385, 551, 943, 1339, 1803, 2051
Bso31I	GGTCTC	1 cut(s)	1750
BsoBI	CYCGRG	2 cut(s)	1157, 2006
Bsp120I	GGGCCC	1 cut(s)	1801
Bsp1286I	GDGCHC	4 cut(s)	708, 1805, 1932, 2015
Bsp1407I	TGTACA	1 cut(s)	2097
Bsp68I	TCGCGA	1 cut(s)	969
BspACI	CCGC	3 cut(s)	49, 417, 1862
BspANI	GGCC	6 cut(s)	385, 551, 943, 1339, 1803, 2051
BspCNI	CTCAG	5 cut(s)	940, 1012, 1335, 1537, 1741
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	1794
BspLI	GGNNCC	3 cut(s)	717, 1803, 1804
BspMAI	CTGCAG	2 cut(s)	1780, 2058
BspMI	ACCTGC	1 cut(s)	2047
BspPI	GGATC	4 cut(s)	267, 405, 531, 1862
BspQI	GCTCTTC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	1750
BsrDI	GCAATG	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	2097
BsrI	ACTGG	5 cut(s)	772, 777, 1606, 1714, 1843
BssECI	CCNNGG	3 cut(s)	975, 1158, 1804
BssT1I	CCWWGG	1 cut(s)	975
Bst2UI	CCWGG	2 cut(s)	321, 675
Bst4CI	ACNGT	2 cut(s)	1114, 2035
Bst6I	CTCTTC	2 cut(s)	766, 1448
BstAPI	GCANNNNNTGC	2 cut(s)	312, 1661
BstAUI	TGTACA	1 cut(s)	2097
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	6 cut(s)	948, 999, 1322, 1334, 1524, 1749
BstF5I	GGATG	2 cut(s)	1372, 1903
BstFNI	CGCG	1 cut(s)	969
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	2 cut(s)	933, 1894
BstMAI	GTCTC	5 cut(s)	96, 110, 1279, 1750, 1967
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 312, 1661, 1927, 2019
BstNI	CCWGG	2 cut(s)	321, 675
BstNSI	RCATGY	2 cut(s)	276, 1624
BstPAI	GACNNNNGTC	1 cut(s)	1009
BstSCI	CCNGG	3 cut(s)	319, 673, 1804
BstSFI	CTRYAG	3 cut(s)	1776, 2031, 2054
BstSLI	GKGCMC	2 cut(s)	708, 1805
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	3 cut(s)	610, 818, 1985
BstX2I	RGATCY	3 cut(s)	259, 410, 1867
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	3 cut(s)	259, 410, 1867
Bsu36I	CCTNAGG	1 cut(s)	999
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	6 cut(s)	385, 551, 943, 1339, 1803, 2051
BtsCI	GGATG	2 cut(s)	1372, 1903
BtsIMutI	CAGTG	5 cut(s)	765, 1330, 1496, 1533, 1850
BtuMI	TCGCGA	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	2047
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	1794
CfoI	GCGC	2 cut(s)	933, 1894
Cfr13I	GGNCC	4 cut(s)	716, 1801, 1802, 2050
Csp6I	GTAC	4 cut(s)	129, 1331, 2092, 2098
CspCI	CAANNNNNGTGG	2 cut(s)	1522, 1557
CviAII	CATG	8 cut(s)	46, 106, 273, 367, 733, 1621, 1795, 1933
CviQI	GTAC	4 cut(s)	129, 1331, 2092, 2098
DdeI	CTNAG	6 cut(s)	948, 999, 1322, 1334, 1524, 1749
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	766, 1448
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	2 cut(s)	766, 1448
EciI	GGCGGA	1 cut(s)	1877
Eco130I	CCWWGG	1 cut(s)	975
Eco147I	AGGCCT	1 cut(s)	1339
Eco24I	GRGCYC	3 cut(s)	1805, 1932, 2015
Eco31I	GGTCTC	1 cut(s)	1750
Eco47I	GGWCC	1 cut(s)	716
Eco47III	AGCGCT	1 cut(s)	932
Eco57I	CTGAAG	2 cut(s)	67, 1557
Eco81I	CCTNAGG	1 cut(s)	999
Eco88I	CYCGRG	2 cut(s)	1157, 2006
EcoO109I	RGGNCCY	2 cut(s)	1801, 1802
EcoRI	GAATTC	2 cut(s)	185, 358
EcoRII	CCWGG	2 cut(s)	319, 673
EcoT14I	CCWWGG	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	1693
EcoT38I	GRGCYC	3 cut(s)	1805, 1932, 2015
ErhI	CCWWGG	1 cut(s)	975
FaeI	CATG	8 cut(s)	49, 109, 276, 370, 736, 1624, 1798, 1936
FalI	AAGNNNNNCTT	2 cut(s)	1857, 1889
FaqI	GGGAC	2 cut(s)	1017, 1112
FatI	CATG	8 cut(s)	45, 105, 272, 366, 732, 1620, 1794, 1932
FauNDI	CATATG	2 cut(s)	233, 469
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	1625
Fnu4HI	GCNGC	4 cut(s)	50, 599, 832, 1999
FokI	GGATG	2 cut(s)	1379, 1910
FriOI	GRGCYC	3 cut(s)	1805, 1932, 2015
Fsp4HI	GCNGC	4 cut(s)	50, 599, 832, 1999
FspBI	CTAG	7 cut(s)	89, 666, 921, 1377, 1548, 1832, 1959
GlaI	GCGC	2 cut(s)	932, 1893
GluI	GCNGC	4 cut(s)	50, 599, 832, 1999
GsuI	CTGGAG	1 cut(s)	1731
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	6 cut(s)	385, 551, 943, 1339, 1803, 2051
HapII	CCGG	3 cut(s)	178, 1193, 1806
HhaI	GCGC	2 cut(s)	933, 1894
Hin1II	CATG	8 cut(s)	49, 109, 276, 370, 736, 1624, 1798, 1936
Hin6I	GCGC	2 cut(s)	931, 1892
HinP1I	GCGC	2 cut(s)	931, 1892
HincII	GTYRAC	2 cut(s)	300, 1603
HindII	GTYRAC	2 cut(s)	300, 1603
HindIII	AAGCTT	2 cut(s)	70, 1304
HinfI	GANTC	9 cut(s)	110, 226, 352, 638, 855, 866, 1205, 1703, 1909
HpaII	CCGG	3 cut(s)	178, 1193, 1806
HphI	GGTGA	2 cut(s)	884, 1182
Hpy166II	GTNNAC	7 cut(s)	300, 706, 719, 823, 1412, 1603, 1626
Hpy188III	TCNNGA	9 cut(s)	263, 968, 1014, 1035, 1247, 1584, 1668, 1795, 1913
Hpy8I	GTNNAC	7 cut(s)	300, 706, 719, 823, 1412, 1603, 1626
HpyAV	CCTTC	8 cut(s)	91, 192, 626, 899, 1539, 1735, 1762, 1792
HpyCH4III	ACNGT	2 cut(s)	1114, 2035
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 312, 1661, 1927, 2019
HpyF3I	CTNAG	6 cut(s)	948, 999, 1322, 1334, 1524, 1749
Hsp92II	CATG	8 cut(s)	49, 109, 276, 370, 736, 1624, 1798, 1936
HspAI	GCGC	2 cut(s)	931, 1892
Ksp22I	TGATCA	1 cut(s)	42
LguI	GCTCTTC	1 cut(s)	766
LmnI	GCTCC	3 cut(s)	1081, 1495, 2067
Lsp1109I	GCAGC	3 cut(s)	610, 818, 1985
LweI	GCATC	5 cut(s)	463, 574, 811, 1678, 1700
MaeI	CTAG	7 cut(s)	89, 666, 921, 1377, 1548, 1832, 1959
MaeIII	GTNAC	2 cut(s)	1116, 1827
MfeI	CAATTG	2 cut(s)	881, 1952
MflI	RGATCY	3 cut(s)	259, 410, 1867
MhlI	GDGCHC	4 cut(s)	708, 1805, 1932, 2015
MlsI	TGGCCA	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	3 cut(s)	119, 647, 1199
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	1693
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	8 cut(s)	372, 498, 807, 875, 1131, 1280, 1512, 2073
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	3 cut(s)	178, 1193, 1806
MspR9I	CCNGG	3 cut(s)	321, 675, 1806
MunI	CAATTG	2 cut(s)	881, 1952
Mva1269I	GAATGC	2 cut(s)	245, 1655
MvaI	CCWGG	2 cut(s)	321, 675
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	5 cut(s)	208, 312, 1661, 1927, 2019
NciI	CCSGG	1 cut(s)	1806
NdeI	CATATG	2 cut(s)	233, 469
NlaIII	CATG	8 cut(s)	49, 109, 276, 370, 736, 1624, 1798, 1936
NlaIV	GGNNCC	3 cut(s)	717, 1803, 1804
NruI	TCGCGA	1 cut(s)	969
NsiI	ATGCAT	1 cut(s)	1693
NspI	RCATGY	2 cut(s)	276, 1624
PaeR7I	CTCGAG	1 cut(s)	2006
PagI	TCATGA	1 cut(s)	1794
PceI	AGGCCT	1 cut(s)	1339
PciI	ACATGT	1 cut(s)	1620
PciSI	GCTCTTC	1 cut(s)	766
PctI	GAATGC	2 cut(s)	245, 1655
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	6 cut(s)	226, 352, 855, 866, 1703, 1909
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	51, 600, 833, 2000
PleI	GAGTC	3 cut(s)	118, 646, 1199
PpsI	GAGTC	3 cut(s)	118, 646, 1199
PscI	ACATGT	1 cut(s)	1620
PshAI	GACNNNNGTC	1 cut(s)	1009
PsiI	TTATAA	1 cut(s)	846
Psp6I	CCWGG	2 cut(s)	319, 673
PspGI	CCWGG	2 cut(s)	319, 673
PspN4I	GGNNCC	3 cut(s)	717, 1803, 1804
PspOMI	GGGCCC	1 cut(s)	1801
PspPI	GGNCC	4 cut(s)	716, 1801, 1802, 2050
PspXI	VCTCGAGB	1 cut(s)	2006
PsrI	GAACNNNNNNTAC	2 cut(s)	1773, 1805
PstI	CTGCAG	2 cut(s)	1780, 2058
PsuI	RGATCY	3 cut(s)	259, 410, 1867
RruI	TCGCGA	1 cut(s)	969
RsaI	GTAC	4 cut(s)	130, 1332, 2093, 2099
RsaNI	GTAC	4 cut(s)	129, 1331, 2092, 2098
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	766
SaqAI	TTAA	8 cut(s)	372, 498, 807, 875, 1131, 1280, 1512, 2073
SatI	GCNGC	4 cut(s)	50, 599, 832, 1999
Sau96I	GGNCC	4 cut(s)	716, 1801, 1802, 2050
SbfI	CCTGCAGG	1 cut(s)	2058
ScaI	AGTACT	1 cut(s)	2093
SchI	GAGTC	3 cut(s)	119, 647, 1199
ScrFI	CCNGG	3 cut(s)	321, 675, 1806
SdaI	CCTGCAGG	1 cut(s)	2058
SduI	GDGCHC	4 cut(s)	708, 1805, 1932, 2015
SfaNI	GCATC	5 cut(s)	463, 574, 811, 1678, 1700
SfcI	CTRYAG	3 cut(s)	1776, 2031, 2054
Sfr274I	CTCGAG	1 cut(s)	2006
SinI	GGWCC	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	2006
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	826, 2006
SmoI	CTYRAG	2 cut(s)	826, 2006
SpeI	ACTAGT	1 cut(s)	1958
Sse8387I	CCTGCAGG	1 cut(s)	2058
SseBI	AGGCCT	1 cut(s)	1339
SsiI	CCGC	3 cut(s)	49, 417, 1862
SspI	AATATT	1 cut(s)	1406
SspMI	CTAG	7 cut(s)	89, 666, 921, 1377, 1548, 1832, 1959
StuI	AGGCCT	1 cut(s)	1339
StyD4I	CCNGG	3 cut(s)	319, 673, 1804
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	2 cut(s)	1114, 2035
TaqI	TCGA	5 cut(s)	651, 853, 1701, 1726, 2007
TaqII	GACCGA	2 cut(s)	81, 1154
TatI	WGTACW	3 cut(s)	1330, 2091, 2097
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	6 cut(s)	226, 352, 855, 866, 1703, 1909
Tru1I	TTAA	8 cut(s)	372, 498, 807, 875, 1131, 1280, 1512, 2073
Tru9I	TTAA	8 cut(s)	372, 498, 807, 875, 1131, 1280, 1512, 2073
TscAI	CASTG	5 cut(s)	772, 1330, 1503, 1540, 1850
TseI	GCWGC	3 cut(s)	598, 831, 1998
TspDTI	ATGAA	9 cut(s)	17, 198, 267, 1165, 1383, 1458, 1466, 1608, 1811
TspRI	CASTG	5 cut(s)	772, 1330, 1503, 1540, 1850
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	5 cut(s)	185, 358, 516, 958, 1975
XceI	RCATGY	2 cut(s)	276, 1624
XhoI	CTCGAG	1 cut(s)	2006
XmiI	GTMKAC	1 cut(s)	1625
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	7 cut(s)	89, 666, 921, 1377, 1548, 1832, 1959
ZrmI	AGTACT	1 cut(s)	2093
Zsp2I	ATGCAT	1 cut(s)	1693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.