Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Reverse (-)

10336470 .. 10338002

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTGGAGCCTATCTCTCTATATCTTCCTGATTATACACAAGATCGATCTGCAGAAAATCTTCATGAGAAACCAGGCGAACAAAAAGCTTTACTCCTCTTTTCTCAGAATTACCAGACGGGTGGATGAGCTATCTTCTGTCTTTTCACCATTATTCACAAAATATTGTGAACCCATCACTGATCTGAATGTTGTTCCCAATAAAGAGACGAACCAAAGGCTGTACAATTTTTTTCGTCCCCATGTTGCTCCTGCACTGAATGAGACATTTAAGGTTTCGTCACAGCAATCCCCCGAAGTTGAAGTTAAGGAGAGAAAAGGGAAGGGGGGCACAAGGAAATCCAGAGATTTTGAAGTTGAAGAATTAGATTTCCATATGCCTACTTCCGCCAAATATCTTCTTATTGCAGCATTCCTTGCTTCAAGAAACCCAGCTACCCTTGATTCATCCCTGTTTGATTCTACAGGAGGTTCTAATAGTCGAAAACGAAAGAGGAAGCTTTCGGACAAGTCAATGGAACAGAAGGAAACTGCAGAACAGGAATTGCTTTTGAATCCTGGATCATTCCCAATGGAAAGGTTATTAGCCATATTTCAGTGCATTACATCTGTAGGAGAAGGTCCTCTTGATGAGGAGGGACAAGAAGATGGTGGGTTAGACATTCAAGATGGGAATGGCGGGCTCATGTCTGATGTTCTCTTACAACTGTCCAGTCTCTGCAGTGCTAATTTTATTGTCACTGGTGGAAGCTGCCCGCTGGAGGGCTCAACTCGATATCGATCGACAGTGAGTGAAGATATGGCTCTTAAGGTAGCAAGGAGTATTAAGTTTCCTCTCTCAAAGTATATATACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

286

Amino Acids

32.15

Weight (kDa)

8.56

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC5_lid	PF21639	30 - 74	2.3e-08	ORC5, lid domain
ORC5_C	PF14630	126 - 283	5.2e-40	Origin recognition complex (ORC) subunit 5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	387, 678, 755
AclWI	GGATC	1 cut(s)	568
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	760, 761
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	6 cut(s)	302, 353, 359, 423, 553, 665
AjnI	CCWGG	2 cut(s)	72, 556
AluBI	AGCT	5 cut(s)	88, 130, 434, 499, 750
AluI	AGCT	5 cut(s)	88, 130, 434, 499, 750
Alw26I	GTCTC	3 cut(s)	200, 257, 719
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	407, 750
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	684, 767
BbvI	GCAGC	2 cut(s)	419, 737
BccI	CCATC	3 cut(s)	182, 641, 662
BciT130I	CCWGG	2 cut(s)	74, 558
BcoDI	GTCTC	3 cut(s)	200, 257, 719
BfmI	CTRYAG	5 cut(s)	50, 462, 531, 609, 718
BfrI	CTTAAG	1 cut(s)	806
BisI	GCNGC	2 cut(s)	408, 751
BlsI	GCNGC	2 cut(s)	409, 752
Bme1390I	CCNGG	2 cut(s)	74, 558
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	2 cut(s)	74, 558
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	779
Bsa29I	ATCGAT	2 cut(s)	45, 778
BsaBI	GATNNNNATC	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 761
Bse1I	ACTGG	2 cut(s)	711, 745
Bse8I	GATNNNNATC	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	74, 558
BseCI	ATCGAT	2 cut(s)	45, 778
BseGI	GGATG	2 cut(s)	130, 446
BseJI	GATNNNNATC	1 cut(s)	778
BseLI	CCNNNNNNNGG	2 cut(s)	760, 761
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	711, 745
BseRI	GAGGAG	2 cut(s)	85, 647
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	419, 737
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	782
BshVI	ATCGAT	2 cut(s)	45, 778
BsiEI	CGRYCG	1 cut(s)	782
BslFI	GGGAC	2 cut(s)	222, 651
BslI	CCNNNNNNNGG	2 cut(s)	760, 761
BsmAI	GTCTC	3 cut(s)	200, 257, 719
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	222, 651
BsmI	GAATGC	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	332, 684, 767
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	5 cut(s)	42, 46, 181, 560, 779
BspACI	CCGC	3 cut(s)	387, 678, 755
BspCNI	CTCAG	1 cut(s)	117
BspDI	ATCGAT	2 cut(s)	45, 778
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	8
BspMAI	CTGCAG	3 cut(s)	54, 535, 722
BspPI	GGATC	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	711, 745
BssMI	GATC	5 cut(s)	42, 46, 181, 560, 779
Bst2UI	CCWGG	2 cut(s)	74, 558
Bst4CI	ACNGT	2 cut(s)	708, 787
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	680, 755
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	130, 446
BstKTI	GATC	5 cut(s)	45, 49, 184, 563, 782
BstMAI	GTCTC	3 cut(s)	200, 257, 719
BstMBI	GATC	5 cut(s)	42, 46, 181, 560, 779
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	74, 558
BstSCI	CCNGG	2 cut(s)	72, 556
BstSFI	CTRYAG	5 cut(s)	50, 462, 531, 609, 718
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	419, 737
BstXI	CCANNNNNNTGG	1 cut(s)	121
Bsu15I	ATCGAT	2 cut(s)	45, 778
BsuTUI	ATCGAT	2 cut(s)	45, 778
BtsCI	GGATG	2 cut(s)	130, 446
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	6 cut(s)	177, 254, 602, 727, 738, 792
Cac8I	GCNNGC	2 cut(s)	680, 755
CaiI	CAGNNNCTG	1 cut(s)	717
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	620
ClaI	ATCGAT	2 cut(s)	45, 778
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	64, 242, 685
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	5 cut(s)	44, 48, 183, 562, 781
DpnII	GATC	5 cut(s)	42, 46, 181, 560, 779
EciI	GGCGGA	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	684, 767
Eco32I	GATATC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	72, 556
EcoRV	GATATC	1 cut(s)	776
EcoT38I	GRGCYC	2 cut(s)	684, 767
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	67, 245, 688
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	2 cut(s)	222, 651
FatI	CATG	3 cut(s)	63, 241, 684
FauI	CCCGC	2 cut(s)	671, 762
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	408, 751
FokI	GGATG	2 cut(s)	137, 433
FriOI	GRGCYC	2 cut(s)	684, 767
Fsp4HI	GCNGC	2 cut(s)	408, 751
GluI	GCNGC	2 cut(s)	408, 751
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	779
Hin1II	CATG	3 cut(s)	67, 245, 688
HindIII	AAGCTT	2 cut(s)	86, 497
HinfI	GANTC	3 cut(s)	443, 458, 553
HphI	GGTGA	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	107, 186, 505, 691
Hpy188III	TCNNGA	6 cut(s)	28, 64, 342, 423, 626, 665
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	316, 517, 611
HpyCH4III	ACNGT	2 cut(s)	708, 787
HpyCH4V	TGCA	6 cut(s)	52, 254, 407, 533, 600, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	67, 245, 688
Kzo9I	GATC	5 cut(s)	42, 46, 181, 560, 779
LmnI	GCTCC	2 cut(s)	6, 253
Lsp1109I	GCAGC	2 cut(s)	419, 737
MaeIII	GTNAC	2 cut(s)	279, 736
MalI	GATC	5 cut(s)	44, 48, 183, 562, 781
MboI	GATC	5 cut(s)	42, 46, 181, 560, 779
MboII	GAAGA	7 cut(s)	16, 52, 126, 371, 389, 656, 806
MhlI	GDGCHC	3 cut(s)	332, 684, 767
MluCI	AATT	5 cut(s)	108, 226, 362, 542, 727
MnlI	CCTC	8 cut(s)	106, 461, 486, 625, 628, 633, 754, 843
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	4 cut(s)	270, 306, 807, 825
MspA1I	CMGCKG	1 cut(s)	757
MspCI	CTTAAG	1 cut(s)	806
MspR9I	CCNGG	2 cut(s)	74, 558
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	2 cut(s)	74, 558
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	5 cut(s)	42, 46, 181, 560, 779
NlaIII	CATG	3 cut(s)	67, 245, 688
NlaIV	GGNNCC	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	279, 736
PagI	TCATGA	1 cut(s)	63
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	443, 458, 553
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	409, 752
Ple19I	CGATCG	1 cut(s)	782
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	72, 556
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	72, 556
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	620
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	3 cut(s)	54, 535, 722
PstNI	CAGNNNCTG	1 cut(s)	717
PvuI	CGATCG	1 cut(s)	782
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	270, 306, 807, 825
SatI	GCNGC	2 cut(s)	408, 751
Sau3AI	GATC	5 cut(s)	42, 46, 181, 560, 779
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	74, 558
SduI	GDGCHC	3 cut(s)	332, 684, 767
SfcI	CTRYAG	5 cut(s)	50, 462, 531, 609, 718
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	5 cut(s)	108, 226, 362, 542, 727
SsiI	CCGC	3 cut(s)	387, 678, 755
SspI	AATATT	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	72, 556
TaaI	ACNGT	2 cut(s)	708, 787
TaqI	TCGA	5 cut(s)	45, 481, 772, 778, 782
TasI	AATT	5 cut(s)	108, 226, 362, 542, 727
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	443, 458, 553
Tru1I	TTAA	4 cut(s)	270, 306, 807, 825
Tru9I	TTAA	4 cut(s)	270, 306, 807, 825
TscAI	CASTG	6 cut(s)	184, 261, 602, 727, 745, 792
TseFI	GTSAC	2 cut(s)	279, 736
TseI	GCWGC	2 cut(s)	407, 750
Tsp45I	GTSAC	2 cut(s)	279, 736
TspDTI	ATGAA	2 cut(s)	52, 435
TspRI	CASTG	6 cut(s)	184, 261, 602, 727, 745, 792
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.