Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Reverse (-)

35615170 .. 35620003

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0248300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGTCTCGAGGCAAGGATGGTACGGTTTTGTTGATTGATGTTGGCCCGTCGATGCATAAAGCTCTTCCGGAGATAGAGAAGCTTTGCTCTATGCTGGTGGAGAAGAAGCTCATTTACAGCAAAAGTGATGAAGTAGGAGTTGTTTTGTTCGGCACAGAAGGCACTGAAAATGAGCTAACAAGGGAAGTCGGTGGATATGATCATACAACGGTTTTACAAAATATCAAAGTTGTTGATGAACATCTTATTCAGGCTGTGGAACAACTCCCACGAGGAACTCATAATGGTGATTTTCTTGATGCTGTAATTGTTGGGATAGATATGCTGATAAAGAAATATGGAGAAACAAACAAAGGAAAAAAACGTCTTTGTCTATTTACGAATGCACACTTCCCCACTAAAGCTCCACAAGATGGAACTAAAGAAGATCAAGTTATCACCATTGCCAGACATATGAATACACAAGGCATGAGATTGGAAAGTATAGTCATAAGAGGAGGGCTTACTGGGGAAGCAAAGAAAAGTATAATGGATGAGAATGATCATCTATTGGATATATTCTCAAAGAGAACATGTGCAAAGTTGGTACATGTTGAGACTCCAACCTCATTGCTAGGTGCTCTTAAAACTCGAAAAGTTTCTCCTGTTACAATATTCAGGGGTGATCTTGAGCTGAGCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCCGAAGACAAGTTTCCCACTCTGAAGAAATATTCTGATAAAGCCGCTCCAACAGATAAATTTGCGACACATGAAGTCAAGGTGGATTTTGAGTATAAGAGTGCTGAAGATCTGAGTAAAGTTGTACCTCCAGAACAGAGGATTAAAGGTTATCGTTATGGACCTCAAGTAATTCCCATATCATCTGCTGAATGGGATGCTGTCAAGTTCAAACCAGAAAAAAGTGTGAAACTTCTGGGATTTTCTGATGCTCAAAATATAATGCGACACTATTACATGAAAGATGTCAACGTTTTCATTCCTGAACCGGGTAATACAAGGGCCATTCTTGCTGTTTCTGCCTTGGCACGAGCAATGAAAGATAAGAATAAGGTGGCAATTGTGCGCTGTGTTTGGAGACAAGGACAAGCAAGTGTTATTGTGGGGGCCTTGACACCTAATGTGTCTGACAATGATAATATTCCTGATTCGTTTTACTTCAACGTACTCCCTTTTTCTGAAGATGTTCGAGAATTTCAATTCCCATCTTTCAATAATTTCCCAGCAGCATGGCAACCAAGTGAACAGCAGCAAGAGGCTGCTGATGATTTTGTGAGGATGTTTGATCTTGCACCATCTGGGAAACAGGAGGTTCTGCCACCTGACCTAACACCAAATCCTGTTCTTGAGCGGTTTTTTCGTCATCTTGAGTTAAAGTCAAGGGACCCAGATGCAGCTGTACCTCCAATTGATGAAACCCTCAGGAAGATTAGTGAACCAGATAAGGAGCTGATTGCTGAAAACAAGTCTGTTATTGATGCATTCCGTAGTCGTTTTGAACTCAAAGAGAACCCAAAGCTGAAGAAATCAAGTAGGCGACTGTTGAAAGAAAAACCATCTGTGTCCGATGAAAGAGAGGATCCTATGGACATTTCTGATCAAACCAACTCCAACGAACATACATCTGGAATTAAGGTTACAAAAATTGGGGATTCTGCTCCTGTCCAGGATTTTGAAGCTATGATGTCCCGTAGAGATAGCCCAGAATGGGTTGGGAAAGCCATCAAGGATATGAAGAACAAAATACACGACTTAGTAGAGGACTCTCACGAAGGGGATAATTATCCTAAAGCACTGGAATGTTTAGTTGCCCTCCGCAAGGGTTGTATCCTAGAGCAAGAACCAAACCAGTTCAATGATTTTCTGCGGTCTCTATGCAAATTCTGCCAGGAGAAGTACCTGAGCAGTTTCTGTGAATTTCTTGCAACCAAAAAACTCACCTTGATTCCCAAGACAGAAGCTATAGACAGTGAAGTAACAGATGCTGAAGCTAGAAGTTTTCTGGTCAAATCAGAGCCAAAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

688

Amino Acids

77.68

Weight (kDa)

6.34

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	8 - 147	2.5e-14	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	227 - 431	8.3e-44	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	452 - 530	1.7e-07	Ku70/Ku80 C-terminal arm
Ku_PK_bind	PF08785	566 - 680	3.1e-38	Ku C terminal domain like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccBSI	CCGCTC	2 cut(s)	764, 1387
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	4 cut(s)	762, 1387, 1852, 1903
AclI	AACGTT	1 cut(s)	1008
AclWI	GGATC	2 cut(s)	1610, 1623
AcsI	RAATTY	4 cut(s)	776, 1229, 1916, 1952
AcuI	CTGAAG	5 cut(s)	761, 843, 1236, 1577, 2043
AfaI	GTAC	6 cut(s)	22, 588, 843, 1203, 1437, 1934
AfiI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
AflIII	ACRYGT	2 cut(s)	572, 589
AgsI	TTSAA	8 cut(s)	928, 1198, 1235, 1249, 1535, 1582, 1712, 1891
AjnI	CCWGG	2 cut(s)	1701, 1923
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	4 cut(s)	9, 590, 1108, 1911
AlwI	GGATC	2 cut(s)	1610, 1623
AlwNI	CAGNNNCTG	2 cut(s)	1947, 2021
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	3 cut(s)	43, 1038, 1143
ApeKI	GCWGC	4 cut(s)	1262, 1285, 1295, 1430
ApoI	RAATTY	4 cut(s)	776, 1229, 1916, 1952
Asp700I	GAANNNNTTC	2 cut(s)	637, 1221
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	4 cut(s)	299, 430, 674, 1966
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	878, 1420
AxyI	CCTNAGG	1 cut(s)	1457
BamHI	GGATCC	1 cut(s)	1615
BanII	GRGCYC	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	270, 1065
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	1274, 1282, 1297, 1442
BccI	CCATC	6 cut(s)	11, 407, 1249, 1339, 1600, 1766
BciT130I	CCWGG	2 cut(s)	1703, 1925
BciVI	GTATCC	1 cut(s)	1874
BclI	TGATCA	3 cut(s)	199, 541, 1633
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BfaI	CTAG	3 cut(s)	614, 1868, 2028
BfmI	CTRYAG	1 cut(s)	1998
BfuI	GTATCC	1 cut(s)	1874
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1431
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	5 cut(s)	763, 1264, 1287, 1297, 1432
Bme1390I	CCNGG	3 cut(s)	1026, 1703, 1925
Bme18I	GGWCC	2 cut(s)	878, 1420
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
BmiI	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
BmrFI	CCNGG	3 cut(s)	1026, 1703, 1925
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	7 cut(s)	42, 289, 904, 955, 1417, 1504, 2008
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	1937
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	4 cut(s)	689, 867, 1403, 1424
BpuMI	CCSGG	1 cut(s)	1026
BsaBI	GATNNNNATC	2 cut(s)	240, 1818
BsaI	GGTCTC	1 cut(s)	1911
BsaJI	CCNNGG	1 cut(s)	1059
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
Bse1I	ACTGG	3 cut(s)	511, 1836, 1885
Bse21I	CCTNAGG	1 cut(s)	1457
Bse3DI	GCAATG	3 cut(s)	441, 608, 1077
Bse8I	GATNNNNATC	2 cut(s)	240, 1818
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	1703, 1925
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	5 cut(s)	22, 538, 716, 919, 1320
BseJI	GATNNNNATC	2 cut(s)	240, 1818
BseLI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
BseMI	GCAATG	3 cut(s)	441, 608, 1077
BseMII	CTCAG	4 cut(s)	665, 821, 1471, 1928
BseNI	ACTGG	3 cut(s)	511, 1836, 1885
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	1274, 1282, 1297, 1442
BseYI	CCCAGC	1 cut(s)	1258
BshFI	GGCC	3 cut(s)	45, 1040, 1145
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	68, 1025
BslFI	GGGAC	2 cut(s)	1433, 1708
BslI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
BsmAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BsmFI	GGGAC	2 cut(s)	1433, 1708
BsmI	GAATGC	2 cut(s)	388, 1517
BsnI	GGCC	3 cut(s)	45, 1040, 1145
Bso31I	GGTCTC	1 cut(s)	1911
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	622, 680
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Bsp1720I	GCTNAGC	1 cut(s)	674
BspACI	CCGC	4 cut(s)	762, 1387, 1852, 1903
BspANI	GGCC	3 cut(s)	45, 1040, 1145
BspCNI	CTCAG	4 cut(s)	666, 822, 1470, 1929
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
BspPI	GGATC	2 cut(s)	1610, 1623
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	1911
BsrBI	CCGCTC	2 cut(s)	764, 1387
BsrDI	GCAATG	3 cut(s)	441, 608, 1077
BsrI	ACTGG	3 cut(s)	511, 1836, 1885
BssECI	CCNNGG	1 cut(s)	1059
BssMI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
BssSI	CACGAG	2 cut(s)	270, 1065
BssT1I	CCWWGG	1 cut(s)	1059
Bst2BI	CACGAG	2 cut(s)	270, 1065
Bst2UI	CCWGG	2 cut(s)	1703, 1925
Bst4CI	ACNGT	4 cut(s)	25, 211, 1578, 2006
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	1920
BstDEI	CTNAG	5 cut(s)	674, 830, 1457, 1789, 1937
BstENI	CCTNNNNNAGG	1 cut(s)	1853
BstF5I	GGATG	5 cut(s)	22, 538, 716, 919, 1320
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	8 cut(s)	202, 430, 544, 667, 829, 1324, 1618, 1636
BstMAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BstMBI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
BstNI	CCWGG	2 cut(s)	1703, 1925
BstNSI	RCATGY	2 cut(s)	576, 593
BstSCI	CCNGG	3 cut(s)	1024, 1701, 1923
BstSFI	CTRYAG	1 cut(s)	1998
BstV1I	GCAGC	4 cut(s)	1274, 1282, 1297, 1442
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	2 cut(s)	826, 1615
BstXI	CCANNNNNNTGG	1 cut(s)	1266
BstYI	RGATCY	2 cut(s)	826, 1615
Bsu36I	CCTNAGG	1 cut(s)	1457
BsuI	GTATCC	1 cut(s)	1874
BsuRI	GGCC	3 cut(s)	45, 1040, 1145
BtsCI	GGATG	5 cut(s)	22, 538, 716, 919, 1320
BtsIMutI	CAGTG	3 cut(s)	162, 1829, 2011
CaiI	CAGNNNCTG	2 cut(s)	1947, 2021
CfoI	GCGC	1 cut(s)	1104
Cfr13I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
Csp6I	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
CviAII	CATG	6 cut(s)	469, 573, 590, 788, 994, 1266
CviQI	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
DdeI	CTNAG	5 cut(s)	674, 830, 1457, 1789, 1937
DpnI	GATC	8 cut(s)	201, 429, 543, 666, 828, 1323, 1617, 1635
DpnII	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	1911
Eco47I	GGWCC	2 cut(s)	878, 1420
Eco57I	CTGAAG	5 cut(s)	761, 843, 1236, 1577, 2043
Eco81I	CCTNAGG	1 cut(s)	1457
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	1853
EcoO109I	RGGNCCY	2 cut(s)	1143, 1420
EcoRII	CCWGG	2 cut(s)	1701, 1923
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	2 cut(s)	57, 1519
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
FaqI	GGGAC	2 cut(s)	1433, 1708
FatI	CATG	6 cut(s)	468, 572, 589, 787, 993, 1265
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	3 cut(s)	199, 541, 1633
Fnu4HI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1431
FokI	GGATG	5 cut(s)	29, 545, 703, 926, 1327
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1431
FspBI	CTAG	3 cut(s)	614, 1868, 2028
GlaI	GCGC	1 cut(s)	1103
GluI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1431
GsaI	CCCAGC	1 cut(s)	1262
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	45, 1040, 1145
HapII	CCGG	2 cut(s)	68, 1025
HhaI	GCGC	1 cut(s)	1104
Hin1II	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	5 cut(s)	598, 1184, 1688, 1799, 1981
HpaII	CCGG	2 cut(s)	68, 1025
HphI	GGTGA	4 cut(s)	299, 430, 674, 1966
Hpy166II	GTNNAC	4 cut(s)	706, 1006, 1280, 1472
Hpy8I	GTNNAC	4 cut(s)	706, 1006, 1280, 1472
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	152, 1802
HpyCH4III	ACNGT	4 cut(s)	25, 211, 1578, 2006
HpyCH4IV	ACGT	3 cut(s)	364, 1008, 1200
HpyCH4V	TGCA	8 cut(s)	55, 386, 578, 1328, 1430, 1517, 1914, 1961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
HpyF3I	CTNAG	5 cut(s)	674, 830, 1457, 1789, 1937
HpySE526I	ACGT	3 cut(s)	364, 1008, 1200
Hsp92II	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
HspAI	GCGC	1 cut(s)	1102
KflI	GGGWCCC	1 cut(s)	1420
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	3 cut(s)	199, 541, 1633
Kzo9I	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	409, 769, 1483, 1699
Lsp1109I	GCAGC	4 cut(s)	1274, 1282, 1297, 1442
LweI	GCATC	7 cut(s)	42, 289, 904, 955, 1417, 1504, 2008
MaeI	CTAG	3 cut(s)	614, 1868, 2028
MaeII	ACGT	3 cut(s)	364, 1008, 1200
MaeIII	GTNAC	3 cut(s)	646, 1672, 2011
MalI	GATC	8 cut(s)	201, 429, 543, 666, 828, 1323, 1617, 1635
MbiI	CCGCTC	2 cut(s)	764, 1387
MboI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
MfeI	CAATTG	2 cut(s)	1095, 1443
MflI	RGATCY	2 cut(s)	826, 1615
MhlI	GDGCHC	2 cut(s)	622, 680
MlyI	GAGTC	2 cut(s)	592, 1793
MmeI	TCCRAC	4 cut(s)	626, 791, 1671, 2040
Mph1103I	ATGCAT	2 cut(s)	57, 1519
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	2 cut(s)	637, 1221
MseI	TTAA	5 cut(s)	624, 693, 861, 1409, 1668
MslI	CAYNNNNRTG	2 cut(s)	285, 1834
MspA1I	CMGCKG	1 cut(s)	1433
MspI	CCGG	2 cut(s)	68, 1025
MspR9I	CCNGG	3 cut(s)	1026, 1703, 1925
MunI	CAATTG	2 cut(s)	1095, 1443
Mva1269I	GAATGC	2 cut(s)	388, 1517
MvaI	CCWGG	2 cut(s)	1703, 1925
MwoI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
NlaIII	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
NlaIV	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
NsiI	ATGCAT	2 cut(s)	57, 1519
NspI	RCATGY	2 cut(s)	576, 593
PaeR7I	CTCGAG	1 cut(s)	6
PciI	ACATGT	2 cut(s)	572, 589
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	2 cut(s)	388, 1517
PdmI	GAANNNNTTC	2 cut(s)	637, 1221
PfeI	GAWTC	3 cut(s)	1184, 1688, 1981
PflMI	CCANNNNNTGG	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	1701
PkrI	GCNGC	5 cut(s)	763, 1264, 1287, 1297, 1432
PleI	GAGTC	2 cut(s)	592, 1793
PpsI	GAGTC	2 cut(s)	592, 1793
PpuMI	RGGWCCY	1 cut(s)	1420
PscI	ACATGT	2 cut(s)	572, 589
Psp1406I	AACGTT	1 cut(s)	1008
Psp5II	RGGWCCY	1 cut(s)	1420
Psp6I	CCWGG	2 cut(s)	1701, 1923
PspFI	CCCAGC	1 cut(s)	1258
PspGI	CCWGG	2 cut(s)	1701, 1923
PspN4I	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
PspPI	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
PspPPI	RGGWCCY	1 cut(s)	1420
PstNI	CAGNNNCTG	2 cut(s)	1947, 2021
PsuI	RGATCY	2 cut(s)	826, 1615
PvuII	CAGCTG	1 cut(s)	1433
RsaI	GTAC	6 cut(s)	22, 588, 843, 1203, 1437, 1934
RsaNI	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
RseI	CAYNNNNRTG	2 cut(s)	285, 1834
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	624, 693, 861, 1409, 1668
SatI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1431
Sau3AI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Sau96I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
SchI	GAGTC	2 cut(s)	592, 1793
ScrFI	CCNGG	3 cut(s)	1026, 1703, 1925
SduI	GDGCHC	2 cut(s)	622, 680
SfaNI	GCATC	7 cut(s)	42, 289, 904, 955, 1417, 1504, 2008
SfcI	CTRYAG	1 cut(s)	1998
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	878, 1420
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	285, 1834
SmlI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SmoI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SsiI	CCGC	4 cut(s)	762, 1387, 1852, 1903
SspI	AATATT	3 cut(s)	654, 749, 1177
SspMI	CTAG	3 cut(s)	614, 1868, 2028
StyD4I	CCNGG	3 cut(s)	1024, 1701, 1923
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	4 cut(s)	25, 211, 1578, 2006
TaiI	ACGT	3 cut(s)	367, 1011, 1203
TaqI	TCGA	4 cut(s)	7, 50, 631, 1225
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	1184, 1688, 1981
Tru1I	TTAA	5 cut(s)	624, 693, 861, 1409, 1668
Tru9I	TTAA	5 cut(s)	624, 693, 861, 1409, 1668
TscAI	CASTG	3 cut(s)	169, 1836, 2011
TseI	GCWGC	4 cut(s)	1262, 1285, 1295, 1430
TspGWI	ACGGA	1 cut(s)	1511
TspRI	CASTG	3 cut(s)	169, 1836, 2011
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	878, 1420
XagI	CCTNNNNNAGG	1 cut(s)	1853
XapI	RAATTY	4 cut(s)	776, 1229, 1916, 1952
XceI	RCATGY	2 cut(s)	576, 593
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	2 cut(s)	637, 1221
XspI	CTAG	3 cut(s)	614, 1868, 2028
Zsp2I	ATGCAT	2 cut(s)	57, 1519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.