Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

61677305 .. 61677842

Gene Structure 538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0487300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCACTCCGATATGATGTATCTTCTAAGTGGAATGTCCCTGTTCGCTTACTACTCGGCATGTTGGCAATACAACAGTACTGGTCGCAGAAGCCATTGCCTTGCGTGATAGCCTTACTTGTGGAAAAGAAAGGGCTACAGGAAAGTAGAAGTGGAAGGGGCACTCAAATAACCCCGCCTTGGAGATTAATCAAAGTCATTGGAGACATAAAGAAGCTTGTTGTTCACTTTTCATCAATCTCTTTCAAACATGTTTTTAGAGAAGCAAATTTTGTTGCTGATACAGTTGCAAATTTAGGCCACAATAGCTTTGTAAATACTTTTTGGACCAATATGGAGGCTTCTAAAGTTTTATTATTTGACAATGTAAATTCTGGTTGCTCCAAAGGTTTTACCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

9.88

Isoelectric Point (pI)

22.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	63 - 99	4.1e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AcsI	RAATTY	3 cut(s)	268, 292, 370
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	217, 309
AluI	AGCT	2 cut(s)	217, 309
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	298
ApoI	RAATTY	3 cut(s)	268, 292, 370
AseI	ATTAAT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	78, 286, 397
BstDEI	CTNAG	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNSI	RCATGY	2 cut(s)	64, 254
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	61, 251
CviJI	RGCY	7 cut(s)	94, 113, 136, 217, 300, 309, 341
CviKI_1	RGCY	7 cut(s)	94, 113, 136, 217, 300, 309, 341
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	64, 254
FaiI	YATR	5 cut(s)	15, 62, 209, 252, 335
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	60, 250
FauI	CCCGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	64, 254
HindIII	AAGCTT	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	3 cut(s)	78, 286, 397
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	64, 254
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	4 cut(s)	54, 67, 125, 360
MboII	GAAGA	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	268, 292, 370
MnlI	CCTC	1 cut(s)	331
MseI	TTAA	2 cut(s)	188, 400
MwoI	GCNNNNNNNGC	1 cut(s)	306
NlaIII	CATG	2 cut(s)	64, 254
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	2 cut(s)	64, 254
PciI	ACATGT	1 cut(s)	250
PscI	ACATGT	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	327
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	188, 400
Sau96I	GGNCC	1 cut(s)	327
ScaI	AGTACT	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	3 cut(s)	219, 311, 391
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	268, 292, 370
SsiI	CCGC	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	78, 286, 397
TasI	AATT	3 cut(s)	268, 292, 370
TatI	WGTACW	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	188, 400
Tru9I	TTAA	2 cut(s)	188, 400
TspDTI	ATGAA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	188
XapI	RAATTY	3 cut(s)	268, 292, 370
XceI	RCATGY	2 cut(s)	64, 254
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.