Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002753

Physical Location & Seq

Genomic Coordinates Forward (+)

35634175 .. 35635735

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTCCATGGCATACCCCACCCCCTCCTCCTCCTACTCCTGTTGTTACAAGAATCACACCAAACGCAACATCATTCCCTCCATTCCACATATTACGTTCTGTCAGCAGCAGCAGCCTCATCAGAACGACCACAAACCCACCGACCCAGTCGGTCGAAGGGAGATTATACTGAGGAGCAGCGAATTGGCAGTGGTGGGAGCCATCTTCAACTTCAGCGGTAAAAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACCGGCTTTGGCTCTTTGTCCAGCTACTAAGAATTGCATTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGACGTAATAGGAAAAAGCCGGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCAACAAAGCCGGACAAGTTCACACCGCGGATAATGGAGAAGAAAGATGATTATGTGAGAGTGGAGTATCAGTCCTCAATCTTAGGGTTTGTGGATGATGTTGAGTTTTGGTTTCCACCGGGCAGAGACTCGATAGTGGAGTACAGATCAGCATCCCGGTTAGGCAACTTCGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0031974 GO:0031981 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_16 ORC5_C

Protein Analysis

225

Amino Acids

25.74

Weight (kDa)

9.22

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1499	PF07386	89 - 214	1e-33	Protein of unknown function (DUF1499)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29910 AT4G29910
fragaria_vesca	FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490 FvH4_7g14490
malus_domestica	MD01G1065000.v1.1 MD07G1135400.v1.1
prunus_persica	Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1 Prupe.2G172000_v2.0.a1
pyrus_communis	pycom01g09430 pycom07g13260
rosa_chinensis	RchiOBHm_Chr1g0355901 RchiOBHm_Chr2g0161261
rosa_laevigata	RLG00000021273 RLG00000028117
rosa_multiflora	Rmu_sc0004705.1_g000017 Rmu_sc0009869.1_g000009
rosa_roxburghii	Rroxscaffold_2G00088970 Rroxscaffold_2G00110130 Rroxscaffold_4G00299930
rosa_rugosa	Rorug01G0248300 Rorug01G0248400 Rorug01G0248500 Rorug02G0487300 Rorug02G0487400 Rorug02G0487500
rosa_samantha	Rh1AG261600 Rh1BG229700 Rh1CG244700 Rh1DG257700 Rh2AG554200 Rh2BG567600 Rh2CG538100 Rh2DG577000
rosa_wichuraiana	Rw1G023100 Rw2G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	451
AciI	CCGC	4 cut(s)	219, 303, 449, 451
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	211, 300
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	281, 672
AluI	AGCT	2 cut(s)	281, 672
Alw26I	GTCTC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	109, 112, 115, 180
AsuC2I	CCSGG	2 cut(s)	543, 580
BbvI	GCAGC	4 cut(s)	121, 124, 127, 192
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	543, 580
BcoDI	GTCTC	1 cut(s)	543
BisI	GCNGC	4 cut(s)	110, 113, 116, 181
BlsI	GCNGC	4 cut(s)	111, 114, 117, 182
Bme1390I	CCNGG	3 cut(s)	343, 543, 580
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	343, 543, 580
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	543, 580
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	4 cut(s)	9, 341, 449, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	2 cut(s)	259, 376
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	9, 341, 449, 663
BseGI	GGATG	2 cut(s)	523, 575
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	2 cut(s)	164, 297
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	19, 22, 190
BseXI	GCAGC	4 cut(s)	121, 124, 127, 192
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	5 cut(s)	260, 377, 434, 542, 580
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	569
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	219, 303, 449, 451
BspCNI	CTCAG	2 cut(s)	165, 298
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	626
BsrFI	RCCGGY	2 cut(s)	259, 376
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	2 cut(s)	259, 376
BssECI	CCNNGG	4 cut(s)	9, 341, 449, 663
BssMI	GATC	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	9, 663
Bst2UI	CCWGG	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	608
BstDEI	CTNAG	4 cut(s)	173, 285, 306, 505
BstDSI	CCRYGG	2 cut(s)	9, 449
BstF5I	GGATG	2 cut(s)	523, 575
BstFNI	CGCG	1 cut(s)	451
BstKTI	GATC	1 cut(s)	572
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	1 cut(s)	569
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 115
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	341, 541, 578
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	121, 124, 127, 192
BtgI	CCRYGG	2 cut(s)	9, 449
BtsCI	GGATG	2 cut(s)	523, 575
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 315
Cfr10I	RCCGGY	2 cut(s)	259, 376
Cfr42I	CCGCGG	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	173, 285, 306, 505
DpnI	GATC	1 cut(s)	571
DpnII	GATC	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	2 cut(s)	9, 663
Eco57I	CTGAAG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	9, 663
ErhI	CCWWGG	2 cut(s)	9, 663
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 16, 93, 170, 333, 351, 398, 477
FalI	AAGNNNNNCTT	1 cut(s)	656
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	110, 113, 116, 181
FokI	GGATG	2 cut(s)	530, 562
Fsp4HI	GCNGC	4 cut(s)	110, 113, 116, 181
GluI	GCNGC	4 cut(s)	110, 113, 116, 181
HapII	CCGG	5 cut(s)	260, 377, 434, 542, 580
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	3 cut(s)	55, 551, 618
HpaII	CCGG	5 cut(s)	260, 377, 434, 542, 580
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	98, 361
HpyCH4V	TGCA	2 cut(s)	247, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 115
HpyF3I	CTNAG	4 cut(s)	173, 285, 306, 505
HpySE526I	ACGT	2 cut(s)	98, 361
Hsp92II	CATG	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	177, 200
Lsp1109I	GCAGC	4 cut(s)	121, 124, 127, 192
LweI	GCATC	1 cut(s)	584
MaeII	ACGT	2 cut(s)	98, 361
MaeIII	GTNAC	2 cut(s)	47, 313
MalI	GATC	1 cut(s)	571
MboI	GATC	1 cut(s)	569
MboII	GAAGA	3 cut(s)	199, 475, 625
MluCI	AATT	2 cut(s)	185, 289
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	9 cut(s)	37, 40, 43, 91, 129, 168, 348, 394, 508
MspA1I	CMGCKG	3 cut(s)	219, 305, 451
MspI	CCGG	5 cut(s)	260, 377, 434, 542, 580
MspR9I	CCNGG	3 cut(s)	343, 543, 580
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	11, 115
NciI	CCSGG	2 cut(s)	543, 580
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	569
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	55, 618
PflFI	GACNNNGTC	2 cut(s)	149, 323
PkrI	GCNGC	4 cut(s)	111, 114, 117, 182
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	202
PsyI	GACNNNGTC	2 cut(s)	149, 323
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SacII	CCGCGG	1 cut(s)	452
SatI	GCNGC	4 cut(s)	110, 113, 116, 181
Sau3AI	GATC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	3 cut(s)	343, 543, 580
SetI	ASST	5 cut(s)	101, 283, 364, 655, 674
SfaNI	GCATC	1 cut(s)	584
Sfr303I	CCGCGG	1 cut(s)	452
SgrBI	CCGCGG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	185, 289
SsiI	CCGC	4 cut(s)	219, 303, 449, 451
StyD4I	CCNGG	3 cut(s)	341, 541, 578
StyI	CCWWGG	2 cut(s)	9, 663
TaiI	ACGT	2 cut(s)	101, 364
TaqI	TCGA	3 cut(s)	157, 554, 594
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	185, 289
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	55, 618
TscAI	CASTG	2 cut(s)	198, 322
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	109, 112, 115, 180
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	2 cut(s)	198, 322
Tth111I	GACNNNGTC	2 cut(s)	149, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.