Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

27178563 .. 27182148

Gene Structure 3586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1192000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGAAACGCTGATCTTCTTCCATCTCTACCCTCCCATCTTTTCAACTTTGGAAACAATATTGATATTCAGATGACAAATTGGGATGCACAAATGAACATGAACAGAAAATTTGGGTTTTGCATGGGGTCCAAGGCATTCGAAAGTGACAACCAGAATAACATGAGAGCCGGAGACTTTTCTCTTCCTCTGCAGCAGTCATCATCCCTCCTTACCTATCAATCTGCAGTTAACTATCCATCGGGTGCCTTAAGATATGATGACATTTCCGAGCAGTCAATGTTGCTGGACAAGAAGATTTCAGCTCCCCAATTTCTAGATTGCCAGGCCATACAAAATGCAAGGAAACGTCCAATTGAGGTTGATGACCTTGGTCGTCTTGTTGGTGACACGACAGCTCTAAACGACTTATACAACAATAAGAGAAACAAGATGACAAACATTAATTCTCAACAACAATGGCATCAAGAAAGCTCAATGGAGCAACAAAACAATAAGTTGCATCATCTGCCTGTGCGAAGAAGCCAAAAGCTTAGTGACAAAATCACAGCTCTCCAAAAATTGGTTTCCCCCTATGGAAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCCATATATATCATGCTCCTCCAAGAACAAATTCAGAATCTGGTAAGGATGCTTAGTAGTTCATACAAGAATGCTGCAGCTCTTCACCCACAGGAATCTGGGAGTGGGCAGGTGCTTGATCTCAGAAGCAAAGGTCTTTGCTTGGTTCCTGTGTCAATTACTCAGAAAGTGACTATGGAAGAGCGTTCTGATCATCTTGCTACATCAAGAAAAGTTGTCATAGCTAATCACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

8.68

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	712
Acc36I	ACCTGC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	110, 642
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	46, 605
AjnI	CCWGG	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AluBI	AGCT	7 cut(s)	305, 398, 474, 532, 551, 692, 836
AluI	AGCT	7 cut(s)	305, 398, 474, 532, 551, 692, 836
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	652
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	193, 686, 689
ApoI	RAATTY	2 cut(s)	110, 642
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	398, 689
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	205, 673, 701
BccI	CCATC	3 cut(s)	31, 45, 247
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	3 cut(s)	191, 225, 687
BfrI	CTTAAG	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	712
BisI	GCNGC	3 cut(s)	194, 687, 690
BlsI	GCNGC	3 cut(s)	195, 688, 691
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	130, 247, 759
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	4 cut(s)	76, 472, 511, 651
BoxI	GACNNNNGTC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	132, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	132, 370
BseGI	GGATG	3 cut(s)	91, 203, 666
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	3 cut(s)	609, 748, 788
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	205, 673, 701
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	137, 688
BsnI	GGCC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	13, 730, 802
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	3 cut(s)	608, 747, 787
BspLI	GGNNCC	3 cut(s)	130, 247, 759
BspMAI	CTGCAG	3 cut(s)	195, 229, 691
BspMI	ACCTGC	1 cut(s)	712
BspQI	GCTCTTC	2 cut(s)	699, 786
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	132, 370
BssMI	GATC	3 cut(s)	13, 730, 802
BssT1I	CCWWGG	2 cut(s)	132, 370
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	189, 699, 786
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	5 cut(s)	533, 595, 665, 734, 774
BstF5I	GGATG	3 cut(s)	91, 203, 666
BstKTI	GATC	3 cut(s)	16, 733, 805
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	13, 730, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	326
BstPAI	GACNNNNGTC	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	3 cut(s)	191, 225, 687
BstV1I	GCAGC	3 cut(s)	205, 673, 701
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	91, 203, 666
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	712
CaiI	CAGNNNCTG	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	4 cut(s)	100, 124, 163, 625
DdeI	CTNAG	5 cut(s)	533, 595, 665, 734, 774
DpnI	GATC	3 cut(s)	15, 732, 804
DpnII	GATC	3 cut(s)	13, 730, 802
Eam1104I	CTCTTC	3 cut(s)	189, 699, 786
EarI	CTCTTC	3 cut(s)	189, 699, 786
Eco130I	CCWWGG	2 cut(s)	132, 370
Eco47I	GGWCC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	132, 370
ErhI	CCWWGG	2 cut(s)	132, 370
FaeI	CATG	4 cut(s)	103, 127, 166, 628
FatI	CATG	4 cut(s)	99, 123, 162, 624
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	3 cut(s)	194, 687, 690
FokI	GGATG	3 cut(s)	98, 190, 673
Fsp4HI	GCNGC	3 cut(s)	194, 687, 690
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	3 cut(s)	194, 687, 690
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	4 cut(s)	103, 127, 166, 628
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	649, 707
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	398, 689
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	6 cut(s)	72, 271, 648, 737, 777, 802
Hpy188III	TCNNGA	4 cut(s)	317, 467, 605, 819
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	7 cut(s)	89, 123, 193, 227, 341, 502, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	5 cut(s)	533, 595, 665, 734, 774
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	103, 127, 166, 628
Ksp22I	TGATCA	1 cut(s)	802
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	13, 730, 802
LguI	GCTCTTC	2 cut(s)	699, 786
LmnI	GCTCC	3 cut(s)	310, 481, 633
Lsp1109I	GCAGC	3 cut(s)	205, 673, 701
LweI	GCATC	4 cut(s)	76, 472, 511, 651
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	4 cut(s)	146, 386, 536, 781
MalI	GATC	3 cut(s)	15, 732, 804
MboI	GATC	3 cut(s)	13, 730, 802
MboII	GAAGA	8 cut(s)	8, 11, 176, 307, 531, 593, 686, 803
MfeI	CAATTG	1 cut(s)	354
MluCI	AATT	8 cut(s)	79, 110, 311, 354, 445, 560, 642, 768
MnlI	CCTC	7 cut(s)	43, 198, 218, 352, 601, 604, 641
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	3 cut(s)	231, 251, 444
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	137, 688
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeII	GATC	3 cut(s)	13, 730, 802
NlaIII	CATG	4 cut(s)	103, 127, 166, 628
NlaIV	GGNNCC	3 cut(s)	130, 247, 759
NmuCI	GTSAC	4 cut(s)	146, 386, 536, 781
NspV	TTCGAA	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	712
PciSI	GCTCTTC	2 cut(s)	699, 786
PctI	GAATGC	2 cut(s)	137, 688
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	649, 707
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	195, 688, 691
PshAI	GACNNNNGTC	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	130, 247, 759
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	3 cut(s)	195, 229, 691
PstNI	CAGNNNCTG	1 cut(s)	652
SapI	GCTCTTC	2 cut(s)	699, 786
SaqAI	TTAA	3 cut(s)	231, 251, 444
SatI	GCNGC	3 cut(s)	194, 687, 690
Sau3AI	GATC	3 cut(s)	13, 730, 802
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	326
SfaNI	GCATC	4 cut(s)	76, 472, 511, 651
SfcI	CTRYAG	3 cut(s)	191, 225, 687
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	8 cut(s)	79, 110, 311, 354, 445, 560, 642, 768
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	2 cut(s)	132, 370
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	141
TasI	AATT	8 cut(s)	79, 110, 311, 354, 445, 560, 642, 768
TfiI	GAWTC	2 cut(s)	649, 707
Tru1I	TTAA	3 cut(s)	231, 251, 444
Tru9I	TTAA	3 cut(s)	231, 251, 444
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	4 cut(s)	146, 386, 536, 781
TseI	GCWGC	3 cut(s)	193, 686, 689
Tsp45I	GTSAC	4 cut(s)	146, 386, 536, 781
TspDTI	ATGAA	3 cut(s)	110, 116, 663
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	562
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	110, 642
XbaI	TCTAGA	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.