Prupe.2G230000_v2.0.a1

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0002277
Physical Location & Seq
Reverse (-)
25474923 .. 25478527
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G230000.20

Sequence Viewer

Length: 864 bp
ATGAGAAACGCTCTTCTTCCATCTGTACCCTTCCATCTTTACAACTTTGGAAACAATATTGAAGTTCAGATGTCAAATTGGGATGCTCAAGTCAACATGAACAGAAGACTTGGGTTTTACATGGGGTCCAAGGCATTCGAAAGTGACAACCAAAATAGCAGAGCTGGAGACGACTTTTCTCTTCCTCTTCCTCTTCCTCTGCAGTCATCATCCCTCCTTGCTTATCAACCAGCTTATCCATCTGGTGCATTCAGATACCATGATGGTGTTTCCCAGCAGCCAGTCTTGCTGGACAAGAAGATTTCAGCTCCCCAATTTGAAGCAGATTTCCAGGCCATACAAAATGCAAGGAAACGTCCAATTGAGGTTGATGACCTTGGTGGTCTGGTTGGTGACAAGACAGCTCTAAACGAATGGAACCAAAATAAGAGAAGCAAGGTGACAAATTCTCAACAACAATGGCATCAACAGTTCCAAGAAACCTCAATGCAACAACAAAACAATAAGAAGTTGCATGCGCCTGTGAGAAGAAGCCAAAAGCTCAGTGACAAGATCACGGTTCTTCAGAAACTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCCATTTATATCATGCTACTTCAAGAACAAATTCAGCAGAATCTGCTAAGGATGTTTAGTAGTTCATACAAGAATGCTGCAGTTCTTCACACACAGGAATGTGGGAGCCGGCAGGTGCTCGACCTCAGAAGCAAAGGCCTTTGTTTGGTTCCTGTATCTGTTACTCAGAAAGTGACCATGGAAGAGGGTGTTGATCATGCTGCTACATCAAGAAAAATTGTCATAGCTAATAACTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.42

Weight (kDa)

9.22

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 724
Acc36I ACCTGC 1 cut(s) 724
AcsI RAATTY 2 cut(s) 445, 651
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 2 cut(s) 27, 860
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 4 cut(s) 62, 320, 614, 644
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 6 cut(s) 164, 233, 308, 404, 541, 848
AluI AGCT 6 cut(s) 164, 233, 308, 404, 541, 848
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 1 cut(s) 162
AlwNI CAGNNNCTG 2 cut(s) 571, 664
AoxI GGCC 2 cut(s) 333, 757
ApeKI GCWGC 3 cut(s) 277, 698, 821
ApoI RAATTY 2 cut(s) 445, 651
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 404, 451
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 289, 685, 808
BccI CCATC 4 cut(s) 28, 42, 247, 257
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 162
BfmI CTRYAG 2 cut(s) 200, 699
BfuAI ACCTGC 1 cut(s) 724
BisI GCNGC 3 cut(s) 278, 699, 822
BlsI GCNGC 3 cut(s) 279, 700, 823
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 4 cut(s) 127, 419, 728, 771
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 73, 472
BpiI GAAGAC 1 cut(s) 112
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 668
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 129, 376, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse118I RCCGGY 1 cut(s) 729
Bse1I ACTGG 2 cut(s) 281, 576
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 129, 376, 798
BseGI GGATG 3 cut(s) 88, 209, 678
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMII CTCAG 4 cut(s) 556, 618, 760, 800
BseNI ACTGG 2 cut(s) 281, 576
BseXI GCAGC 3 cut(s) 289, 685, 808
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 2 cut(s) 335, 759
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 1 cut(s) 730
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsmI GAATGC 3 cut(s) 134, 248, 700
BsnI GGCC 2 cut(s) 335, 759
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 2 cut(s) 552, 814
Bsp19I CCATGG 1 cut(s) 798
BspANI GGCC 2 cut(s) 335, 759
BspCNI CTCAG 4 cut(s) 555, 617, 759, 799
BspLI GGNNCC 4 cut(s) 127, 419, 728, 771
BspMAI CTGCAG 2 cut(s) 204, 703
BspMI ACCTGC 1 cut(s) 724
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 729
BsrI ACTGG 2 cut(s) 281, 576
BssAI RCCGGY 1 cut(s) 729
BssECI CCNNGG 3 cut(s) 129, 376, 798
BssMI GATC 2 cut(s) 552, 814
BssT1I CCWWGG 3 cut(s) 129, 376, 798
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 471, 559
Bst6I CTCTTC 5 cut(s) 18, 186, 192, 198, 798
BstAPI GCANNNNNTGC 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 516, 731
BstDEI CTNAG 5 cut(s) 542, 604, 668, 746, 786
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 3 cut(s) 88, 209, 678
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 555, 817
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 2 cut(s) 552, 814
BstMWI GCNNNNNNNGC 2 cut(s) 286, 664
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 2 cut(s) 200, 699
BstV1I GCAGC 3 cut(s) 289, 685, 808
BstV2I GAAGAC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 335, 759
BtgI CCRYGG 1 cut(s) 798
BtsCI GGATG 3 cut(s) 88, 209, 678
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 550, 597
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 2 cut(s) 516, 731
CaiI CAGNNNCTG 2 cut(s) 571, 664
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 26, 859
CviAII CATG 7 cut(s) 97, 121, 260, 515, 634, 799, 818
CviQI GTAC 2 cut(s) 26, 859
DdeI CTNAG 5 cut(s) 542, 604, 668, 746, 786
DpnI GATC 2 cut(s) 554, 816
DpnII GATC 2 cut(s) 552, 814
Eam1104I CTCTTC 5 cut(s) 18, 186, 192, 198, 798
EarI CTCTTC 5 cut(s) 18, 186, 192, 198, 798
Eco130I CCWWGG 3 cut(s) 129, 376, 798
Eco147I AGGCCT 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 3 cut(s) 129, 376, 798
ErhI CCWWGG 3 cut(s) 129, 376, 798
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 7 cut(s) 100, 124, 263, 518, 637, 802, 821
FatI CATG 7 cut(s) 96, 120, 259, 514, 633, 798, 817
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 278, 699, 822
FokI GGATG 3 cut(s) 95, 196, 685
Fsp4HI GCNGC 3 cut(s) 278, 699, 822
GlaI GCGC 1 cut(s) 519
GluI GCNGC 3 cut(s) 278, 699, 822
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 335, 759
HapII CCGG 1 cut(s) 730
HhaI GCGC 1 cut(s) 520
Hin1II CATG 7 cut(s) 100, 124, 263, 518, 637, 802, 821
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 661
HpaII CCGG 1 cut(s) 730
HphI GGTGA 2 cut(s) 404, 451
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 5 cut(s) 69, 254, 567, 749, 789
Hpy188III TCNNGA 3 cut(s) 614, 644, 831
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 471, 559
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 6 cut(s) 202, 248, 347, 490, 514, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 664
HpyF3I CTNAG 5 cut(s) 542, 604, 668, 746, 786
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 7 cut(s) 100, 124, 263, 518, 637, 802, 821
HspAI GCGC 1 cut(s) 518
KroI GCCGGC 1 cut(s) 729
KroNI GCCGGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 2 cut(s) 552, 814
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 313, 726
Lsp1109I GCAGC 3 cut(s) 289, 685, 808
LweI GCATC 2 cut(s) 73, 472
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 6 cut(s) 143, 392, 439, 545, 781, 793
MalI GATC 2 cut(s) 554, 816
MboI GATC 2 cut(s) 552, 814
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 6 cut(s) 76, 314, 360, 445, 651, 837
MroNI GCCGGC 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 651
MslI CAYNNNNRTG 2 cut(s) 264, 718
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 3 cut(s) 134, 248, 700
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 286, 664
NaeI GCCGGC 1 cut(s) 731
NcoI CCATGG 1 cut(s) 798
NdeII GATC 2 cut(s) 552, 814
NgoMIV GCCGGC 1 cut(s) 729
NlaIII CATG 7 cut(s) 100, 124, 263, 518, 637, 802, 821
NlaIV GGNNCC 4 cut(s) 127, 419, 728, 771
NmuCI GTSAC 5 cut(s) 143, 392, 439, 545, 793
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 138
PaeI GCATGC 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 724
PceI AGGCCT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 3 cut(s) 134, 248, 700
PdiI GCCGGC 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 661
PkrI GCNGC 3 cut(s) 279, 700, 823
Psp6I CCWGG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 127, 419, 728, 771
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 2 cut(s) 204, 703
PstNI CAGNNNCTG 2 cut(s) 571, 664
RsaI GTAC 2 cut(s) 27, 860
RsaNI GTAC 2 cut(s) 26, 859
RseI CAYNNNNRTG 2 cut(s) 264, 718
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 3 cut(s) 278, 699, 822
Sau3AI GATC 2 cut(s) 552, 814
Sau96I GGNCC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 2 cut(s) 73, 472
SfcI CTRYAG 2 cut(s) 200, 699
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 264, 718
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 518
Sse9I AATT 6 cut(s) 76, 314, 360, 445, 651, 837
SseBI AGGCCT 1 cut(s) 759
SspI AATATT 1 cut(s) 58
StuI AGGCCT 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 3 cut(s) 129, 376, 798
TaaI ACNGT 2 cut(s) 471, 559
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 138, 741
TasI AATT 6 cut(s) 76, 314, 360, 445, 651, 837
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 1 cut(s) 661
TscAI CASTG 2 cut(s) 550, 604
TseFI GTSAC 5 cut(s) 143, 392, 439, 545, 793
TseI GCWGC 3 cut(s) 277, 698, 821
Tsp45I GTSAC 5 cut(s) 143, 392, 439, 545, 793
TspDTI ATGAA 2 cut(s) 113, 675
TspRI CASTG 2 cut(s) 550, 604
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 2 cut(s) 445, 651
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.