Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

58572203 .. 58574524

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGTAACGCTCTTCTTAATTCCCATCTTTACAACTTTGGAAATACTGATTTTCAGATGACAAATTGGGATACTCAAATGAACATGAATAGAAAGATTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACCATAACAGTGTTTCTGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCAGGTTATTCCAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCAGCCAATGTTGTTTGACAAGAGTATTAATTCAGCTACCCAATTTCAAGAAGATTTTCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATAGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCAAAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCGATTTGCATCGTGCTTCTTCAACAACAAATTCAGAATCTGCATCGGATCTTTAGTAATTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAAAGGCCTTTGTTTGGTTCCTATTTCCATGACTCAGAAAGTGACTATGGAAGAGGGTTTTGATGAGGATCATCTTTCTACATCAAGAAAATTTGTCATAGCTAACCATTTCAAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.3

Weight (kDa)

7.09

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	689, 840
AcsI	RAATTY	4 cut(s)	236, 457, 663, 854
AfiI	CCNNNNNNNGG	1 cut(s)	778
AgsI	TTSAA	7 cut(s)	311, 399, 420, 578, 626, 656, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	299, 553, 866
AluI	AGCT	3 cut(s)	299, 553, 866
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	689, 840
AlwNI	CAGNNNCTG	1 cut(s)	673
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	2 cut(s)	265, 707
ApoI	RAATTY	4 cut(s)	236, 457, 663, 854
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	318, 415
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	277, 694
BccI	CCATC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	64
BclI	TGATCA	2 cut(s)	178, 247
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	883
BfmI	CTRYAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	266, 708
BlsI	GCNGC	2 cut(s)	267, 709
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	115, 431, 783
BmsI	GCATC	3 cut(s)	503, 651, 685
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	174
BsaBI	GATNNNNATC	2 cut(s)	641, 831
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse8I	GATNNNNATC	2 cut(s)	641, 831
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	2 cut(s)	641, 831
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMII	CTCAG	3 cut(s)	630, 772, 812
BseXI	GCAGC	2 cut(s)	277, 694
BshFI	GGCC	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	340, 709
BsnI	GGCC	1 cut(s)	771
Bsp143I	GATC	4 cut(s)	178, 247, 681, 832
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	3 cut(s)	629, 771, 811
BspLI	GGNNCC	3 cut(s)	115, 431, 783
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	689, 840
BspQI	GCTCTTC	2 cut(s)	18, 579
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	178, 247, 681, 832
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	18, 579, 810
BstDEI	CTNAG	4 cut(s)	554, 616, 758, 798
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	181, 250, 684, 835
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	178, 247, 681, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	277, 694
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	771
BtsI	GCAGTG	2 cut(s)	567, 609
BtsIMutI	CAGTG	3 cut(s)	151, 567, 609
BveI	ACCTGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	4 cut(s)	85, 109, 251, 793
CviJI	RGCY	9 cut(s)	102, 268, 299, 546, 553, 632, 744, 771, 866
CviKI_1	RGCY	9 cut(s)	102, 268, 299, 546, 553, 632, 744, 771, 866
DdeI	CTNAG	4 cut(s)	554, 616, 758, 798
DpnI	GATC	4 cut(s)	180, 249, 683, 834
DpnII	GATC	4 cut(s)	178, 247, 681, 832
Eam1104I	CTCTTC	3 cut(s)	18, 579, 810
EarI	CTCTTC	3 cut(s)	18, 579, 810
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	88, 112, 254, 796
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	84, 108, 250, 792
FbaI	TGATCA	2 cut(s)	178, 247
Fnu4HI	GCNGC	2 cut(s)	266, 708
Fsp4HI	GCNGC	2 cut(s)	266, 708
FspBI	CTAG	1 cut(s)	883
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	266, 708
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	771
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	88, 112, 254, 796
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	670, 728, 796
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	8 cut(s)	57, 166, 204, 242, 669, 681, 761, 801
Hpy188III	TCNNGA	5 cut(s)	153, 176, 311, 626, 849
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	6 cut(s)	108, 338, 526, 642, 676, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	4 cut(s)	554, 616, 758, 798
Hsp92II	CATG	4 cut(s)	88, 112, 254, 796
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	178, 247
Kzo9I	GATC	4 cut(s)	178, 247, 681, 832
LguI	GCTCTTC	2 cut(s)	18, 579
LpnPI	CCDG	6 cut(s)	138, 204, 308, 546, 696, 717
Lsp1109I	GCAGC	2 cut(s)	277, 694
LweI	GCATC	3 cut(s)	503, 651, 685
MaeI	CTAG	1 cut(s)	883
MaeIII	GTNAC	5 cut(s)	5, 131, 211, 557, 805
MalI	GATC	4 cut(s)	180, 249, 683, 834
MboI	GATC	4 cut(s)	178, 247, 681, 832
MboII	GAAGA	6 cut(s)	5, 326, 566, 614, 644, 827
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	790
MnlI	CCTC	8 cut(s)	183, 352, 531, 622, 625, 767, 811, 823
MroXI	GAANNNNTTC	2 cut(s)	318, 415
MseI	TTAA	2 cut(s)	18, 291
MslI	CAYNNNNRTG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	340, 709
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	4 cut(s)	178, 247, 681, 832
NlaIII	CATG	4 cut(s)	88, 112, 254, 796
NlaIV	GGNNCC	3 cut(s)	115, 431, 783
NmuCI	GTSAC	3 cut(s)	131, 557, 805
PceI	AGGCCT	1 cut(s)	771
PciSI	GCTCTTC	2 cut(s)	18, 579
PctI	GAATGC	2 cut(s)	340, 709
PdmI	GAANNNNTTC	2 cut(s)	318, 415
PfeI	GAWTC	2 cut(s)	670, 728
PkrI	GCNGC	2 cut(s)	267, 709
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	115, 431, 783
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	681
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	18, 579
SaqAI	TTAA	2 cut(s)	18, 291
SatI	GCNGC	2 cut(s)	266, 708
Sau3AI	GATC	4 cut(s)	178, 247, 681, 832
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	790
SetI	ASST	9 cut(s)	200, 223, 301, 327, 363, 390, 555, 759, 868
SfaNI	GCATC	3 cut(s)	503, 651, 685
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	144
SseBI	AGGCCT	1 cut(s)	771
SspMI	CTAG	1 cut(s)	883
StuI	AGGCCT	1 cut(s)	771
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	670, 728
Tru1I	TTAA	2 cut(s)	18, 291
Tru9I	TTAA	2 cut(s)	18, 291
TscAI	CASTG	3 cut(s)	151, 574, 616
TseFI	GTSAC	3 cut(s)	131, 557, 805
TseI	GCWGC	2 cut(s)	265, 707
Tsp45I	GTSAC	3 cut(s)	131, 557, 805
TspDTI	ATGAA	4 cut(s)	95, 101, 438, 684
TspRI	CASTG	3 cut(s)	151, 574, 616
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	4 cut(s)	236, 457, 663, 854
XmnI	GAANNNNTTC	2 cut(s)	318, 415
XspI	CTAG	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.