RLG00000027383

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002277
Physical Location & Seq
Forward (+)
11122662 .. 11124582
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027383

Sequence Viewer

Length: 795 bp
ATGGGGATATGGCATTATGGCAGTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACCATAACAGTGTTTCTGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGGTTATTCCAATGGGGAATTCAGATATGTTCATGGCATTTTTCAGCAGCCAATGTTGTTTGACAAGAGTATTAATTCAGCTACCCAATTTCAAGAAGATTTTCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAGCTGCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATGGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCACAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCGATTTACATCGTGCTTCTTCAACAACAAATTCAGAATCTGCATCGGATTTTTAGTAGTTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAAAGGCCTTTGTTTGGTTCCTATTTCCATGACTCAGAAAGTGACTATGGAACAGGGTTTTGATGAGGATCACCTTTCTACATCAAGAAAATTTGTCATAGCTAACCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.67

Weight (kDa)

7.13

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 756
AcsI RAATTY 4 cut(s) 152, 373, 579, 770
AfiI CCNNNNNNNGG 1 cut(s) 694
AgsI TTSAA 5 cut(s) 227, 315, 494, 542, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 4 cut(s) 215, 332, 469, 782
AluI AGCT 4 cut(s) 215, 332, 469, 782
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 756
AlwNI CAGNNNCTG 1 cut(s) 589
AoxI GGCC 1 cut(s) 685
ApeKI GCWGC 3 cut(s) 181, 332, 623
ApoI RAATTY 4 cut(s) 152, 373, 579, 770
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 332, 743
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 193, 319, 610
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 793
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 3 cut(s) 182, 333, 624
BlsI GCNGC 3 cut(s) 183, 334, 625
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 3 cut(s) 40, 347, 699
BmsI GCATC 2 cut(s) 419, 601
BpmI CTGGAG 1 cut(s) 99
BsaBI GATNNNNATC 2 cut(s) 557, 747
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse8I GATNNNNATC 2 cut(s) 557, 747
BseDI CCNNGG 1 cut(s) 304
BseJI GATNNNNATC 2 cut(s) 557, 747
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMII CTCAG 3 cut(s) 546, 688, 728
BseXI GCAGC 3 cut(s) 193, 319, 610
BshFI GGCC 1 cut(s) 687
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 2 cut(s) 256, 625
BsnI GGCC 1 cut(s) 687
Bsp143I GATC 2 cut(s) 103, 748
BspANI GGCC 1 cut(s) 687
BspCNI CTCAG 3 cut(s) 545, 687, 727
BspLI GGNNCC 3 cut(s) 40, 347, 699
BspMAI CTGCAG 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 756
BspQI GCTCTTC 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 103, 748
BssT1I CCWWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 495
BstDEI CTNAG 4 cut(s) 470, 532, 674, 714
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 106, 751
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 103, 748
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 3 cut(s) 193, 319, 610
BsuRI GGCC 1 cut(s) 687
BtsI GCAGTG 3 cut(s) 28, 483, 525
BtsIMutI CAGTG 4 cut(s) 28, 76, 483, 525
BveI ACCTGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 589
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 3 cut(s) 34, 167, 709
DdeI CTNAG 4 cut(s) 470, 532, 674, 714
DpnI GATC 2 cut(s) 105, 750
DpnII GATC 2 cut(s) 103, 748
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 687
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 152
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 37, 170, 712
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 33, 166, 708
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 182, 333, 624
Fsp4HI GCNGC 3 cut(s) 182, 333, 624
FspBI CTAG 1 cut(s) 793
GlaI GCGC 1 cut(s) 263
GluI GCNGC 3 cut(s) 182, 333, 624
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 1 cut(s) 687
HhaI GCGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 37, 170, 712
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 586, 644, 712
HphI GGTGA 2 cut(s) 332, 743
Hpy188I TCNGA 7 cut(s) 91, 129, 158, 585, 597, 677, 717
Hpy188III TCNNGA 5 cut(s) 78, 101, 227, 542, 765
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 6 cut(s) 33, 254, 335, 442, 592, 626
HpyF3I CTNAG 4 cut(s) 470, 532, 674, 714
Hsp92II CATG 3 cut(s) 37, 170, 712
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 748
LguI GCTCTTC 1 cut(s) 495
LpnPI CCDG 7 cut(s) 63, 120, 224, 462, 612, 633, 719
Lsp1109I GCAGC 3 cut(s) 193, 319, 610
LweI GCATC 2 cut(s) 419, 601
MaeI CTAG 1 cut(s) 793
MaeIII GTNAC 3 cut(s) 56, 473, 721
MalI GATC 2 cut(s) 105, 750
MboI GATC 2 cut(s) 103, 748
MboII GAAGA 4 cut(s) 242, 482, 530, 560
MfeI CAATTG 1 cut(s) 315
MlyI GAGTC 1 cut(s) 706
MnlI CCTC 7 cut(s) 108, 268, 447, 538, 541, 683, 739
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 332
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 2 cut(s) 256, 625
NdeII GATC 2 cut(s) 103, 748
NlaIII CATG 3 cut(s) 37, 170, 712
NlaIV GGNNCC 3 cut(s) 40, 347, 699
NmuCI GTSAC 3 cut(s) 56, 473, 721
PceI AGGCCT 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 2 cut(s) 256, 625
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 586, 644
PkrI GCNGC 3 cut(s) 183, 334, 625
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PshBI ATTAAT 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 40, 347, 699
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 182, 333, 624
Sau3AI GATC 2 cut(s) 103, 748
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 706
SfaNI GCATC 2 cut(s) 419, 601
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 687
SspMI CTAG 1 cut(s) 793
StuI AGGCCT 1 cut(s) 687
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 551
TfiI GAWTC 2 cut(s) 586, 644
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 4 cut(s) 28, 76, 490, 532
TseFI GTSAC 3 cut(s) 56, 473, 721
TseI GCWGC 3 cut(s) 181, 332, 623
Tsp45I GTSAC 3 cut(s) 56, 473, 721
TspDTI ATGAA 3 cut(s) 155, 354, 600
TspRI CASTG 4 cut(s) 28, 76, 490, 532
VpaK11BI GGWCC 1 cut(s) 39
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 4 cut(s) 152, 373, 579, 770
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.