Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006406.1

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

11366 .. 13315

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006406.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgttaatggggatatggcattatggcagtggcttttgcatggggtccaaagcaatagaaagtgacaacgaaacaggagacatttctgatgttccttttgatcagtcatcactctttacctatcagacaggtttggtcatacagaatgcaaggaagcgcccaataattgaggtcaatgatatcttgcccaaaaataaccttggtggttcaattagtgagagaacaacttcaaatgaatggaaccaaaacaagagaaacaaggggacaaattctcaacaacaatggcataatcaattccaagaagcatctatggaaaaacaagacaataggaagttgcaagttcctgtgaggcgaagccaaaagcttagtgacaaaatcactgctcttcaaaaattggtttccccctatggcaaggtcagcagtttgcagagcactaaaaagttcatatctttaattcccagtaatataggaaatgaaattctgtactttctggaaagcctaattcaggtatggttaaattcgaaattgttgcagactgacactgcctcagttcttcaagaggcttcgatttacatcgtgcttcttcaacaacaaattcagaatctgcatcggatctttagtagttcatacaagaatgctgcaggacttcacacacaagaatctgggagtagtagccaagtgcttgacctcagaagcaatggcctttgtttggttccgatttccatgactcagaaagtgactatggaagagggttttgatgaggatcatctttctacatcaagaaaatttgtcatagctaaccatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.34

Weight (kDa)

8.44

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	620, 771
AcsI	RAATTY	5 cut(s)	268, 477, 517, 594, 785
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	505, 709
AgsI	TTSAA	5 cut(s)	210, 231, 389, 557, 587
AluBI	AGCT	2 cut(s)	364, 797
AluI	AGCT	2 cut(s)	364, 797
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	620, 771
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	5 cut(s)	268, 477, 517, 594, 785
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	45
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	808
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	3 cut(s)	46, 242, 714
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	314, 616
BmuI	ACTGGG	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	521
BsaBI	GATNNNNATC	2 cut(s)	572, 762
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 709
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	703
Bse8I	GATNNNNATC	2 cut(s)	572, 762
BseDI	CCNNGG	1 cut(s)	199
BseJI	GATNNNNATC	2 cut(s)	572, 762
BseLI	CCNNNNNNNGG	2 cut(s)	505, 709
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	3 cut(s)	561, 703, 743
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	505, 709
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	2 cut(s)	151, 640
BsnI	GGCC	1 cut(s)	702
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	100, 612, 763
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	560, 702, 742
BspLI	GGNNCC	3 cut(s)	46, 242, 714
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	620, 771
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	3 cut(s)	100, 612, 763
BssT1I	CCWWGG	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	390, 741
BstBI	TTCGAA	1 cut(s)	521
BstDEI	CTNAG	4 cut(s)	365, 547, 689, 729
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	103, 615, 766
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	100, 612, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	702
BtsI	GCAGTG	3 cut(s)	34, 378, 540
BtsIMutI	CAGTG	3 cut(s)	34, 378, 540
CaiI	CAGNNNCTG	1 cut(s)	604
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	2 cut(s)	40, 724
CviJI	RGCY	8 cut(s)	33, 357, 364, 498, 563, 675, 702, 797
CviKI_1	RGCY	8 cut(s)	33, 357, 364, 498, 563, 675, 702, 797
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	4 cut(s)	365, 547, 689, 729
DpnI	GATC	3 cut(s)	102, 614, 765
DpnII	GATC	3 cut(s)	100, 612, 763
Eam1104I	CTCTTC	2 cut(s)	390, 741
EarI	CTCTTC	2 cut(s)	390, 741
Eco130I	CCWWGG	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	43, 727
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	39, 723
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	808
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	702
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	43, 727
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	601, 659, 727
Hpy188I	TCNGA	7 cut(s)	88, 126, 600, 612, 692, 717, 732
Hpy188III	TCNNGA	3 cut(s)	491, 557, 780
HpyCH4V	TGCA	7 cut(s)	39, 149, 337, 427, 532, 607, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	4 cut(s)	365, 547, 689, 729
Hsp92II	CATG	2 cut(s)	43, 727
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 612, 763
LguI	GCTCTTC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	60, 114, 357, 472, 476, 491, 627, 648
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	2 cut(s)	314, 616
MaeI	CTAG	1 cut(s)	808
MaeIII	GTNAC	3 cut(s)	62, 368, 736
MalI	GATC	3 cut(s)	102, 614, 765
MboI	GATC	3 cut(s)	100, 612, 763
MboII	GAAGA	4 cut(s)	377, 545, 575, 758
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	721
MnlI	CCTC	7 cut(s)	163, 342, 553, 556, 698, 742, 754
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	5, 452, 515
Mva1269I	GAATGC	2 cut(s)	151, 640
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	3 cut(s)	100, 612, 763
NlaIII	CATG	2 cut(s)	43, 727
NlaIV	GGNNCC	3 cut(s)	46, 242, 714
NmuCI	GTSAC	3 cut(s)	62, 368, 736
NspV	TTCGAA	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	2 cut(s)	151, 640
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	601, 659
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PspN4I	GGNNCC	3 cut(s)	46, 242, 714
PspPI	GGNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	612
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	5, 452, 515
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	100, 612, 763
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	721
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	9 cut(s)	122, 133, 174, 201, 366, 417, 510, 690, 799
SfaNI	GCATC	2 cut(s)	314, 616
SfcI	CTRYAG	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	808
StyI	CCWWGG	1 cut(s)	199
TaqI	TCGA	2 cut(s)	521, 566
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	601, 659
Tru1I	TTAA	3 cut(s)	5, 452, 515
Tru9I	TTAA	3 cut(s)	5, 452, 515
TscAI	CASTG	3 cut(s)	34, 385, 547
TseFI	GTSAC	3 cut(s)	62, 368, 736
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	3 cut(s)	62, 368, 736
TspDTI	ATGAA	4 cut(s)	249, 433, 489, 615
TspRI	CASTG	3 cut(s)	34, 385, 547
VpaK11BI	GGWCC	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	5 cut(s)	268, 477, 517, 594, 785
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.