Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

57329802 .. 57332615

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTAACGCTCTTCTTAATTCCCATCTTTACAACTTTGGAAATACTGATTTTCAGATGATAAATTGGGATACTCAAATGAACATGAATAGAAAGATTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACGAAACAGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCAGGTTATTACAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCAGCCAATGTTGTTTGACAAGAATATTAATTCAGCTACCCAATTTCAAGAGGATTTGCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATAGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCAAAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCATCAGTTCTTCAAGAGGCTTCGATTTACATCGTTCTTCTTCAACAACAAATTCAGAATCTGCATCGGATCTTTAGTAGTTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAATGGCCTTTGTTTGGTTCCGATTTCCTTGACTCAGAAAGTGACTATGGAAGAGGGTTTTGATGAGGATCATCTTTCCACATCAAGAAAATTTGTCATAGCTGGCCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.8

Weight (kDa)

6.17

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	200, 304
AclWI	GGATC	2 cut(s)	680, 831
AcoI	YGGCCR	1 cut(s)	859
AcsI	RAATTY	4 cut(s)	227, 448, 654, 845
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	6 cut(s)	302, 390, 411, 569, 617, 647
AluBI	AGCT	3 cut(s)	290, 544, 857
AluI	AGCT	3 cut(s)	290, 544, 857
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	680, 831
AlwNI	CAGNNNCTG	1 cut(s)	664
AoxI	GGCC	2 cut(s)	760, 859
ApeKI	GCWGC	2 cut(s)	256, 698
ApoI	RAATTY	4 cut(s)	227, 448, 654, 845
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	268, 685
BccI	CCATC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	64
BclI	TGATCA	2 cut(s)	169, 238
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	868
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	2 cut(s)	200, 304
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	257, 699
BlsI	GCNGC	2 cut(s)	258, 700
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	115, 422, 774
BmsI	GCATC	3 cut(s)	494, 614, 676
BplI	GAGNNNNNCTC	1 cut(s)	27
BsaBI	GATNNNNATC	2 cut(s)	632, 822
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	763
Bse8I	GATNNNNATC	2 cut(s)	632, 822
BseDI	CCNNGG	1 cut(s)	379
BseJI	GATNNNNATC	2 cut(s)	632, 822
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	2 cut(s)	763, 803
BseXI	GCAGC	2 cut(s)	268, 685
BshFI	GGCC	2 cut(s)	762, 861
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	2 cut(s)	331, 700
BsnI	GGCC	2 cut(s)	762, 861
Bsp143I	GATC	4 cut(s)	169, 238, 672, 823
BspANI	GGCC	2 cut(s)	762, 861
BspCNI	CTCAG	2 cut(s)	762, 802
BspLI	GGNNCC	3 cut(s)	115, 422, 774
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	2 cut(s)	200, 304
BspPI	GGATC	2 cut(s)	680, 831
BspQI	GCTCTTC	2 cut(s)	18, 570
BsrDI	GCAATG	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	169, 238, 672, 823
BssT1I	CCWWGG	1 cut(s)	379
Bst6I	CTCTTC	3 cut(s)	18, 570, 801
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	3 cut(s)	545, 749, 789
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	4 cut(s)	172, 241, 675, 826
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	169, 238, 672, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	268, 685
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	762, 861
BtsI	GCAGTG	2 cut(s)	558, 600
BtsIMutI	CAGTG	2 cut(s)	558, 600
BveI	ACCTGC	2 cut(s)	200, 304
Cac8I	GCNNGC	1 cut(s)	859
CaiI	CAGNNNCTG	1 cut(s)	664
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	3 cut(s)	85, 109, 242
DdeI	CTNAG	3 cut(s)	545, 749, 789
DpnI	GATC	4 cut(s)	171, 240, 674, 825
DpnII	GATC	4 cut(s)	169, 238, 672, 823
EaeI	YGGCCR	1 cut(s)	859
Eam1104I	CTCTTC	3 cut(s)	18, 570, 801
EarI	CTCTTC	3 cut(s)	18, 570, 801
Eco130I	CCWWGG	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	88, 112, 245
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	84, 108, 241
FbaI	TGATCA	2 cut(s)	169, 238
Fnu4HI	GCNGC	2 cut(s)	257, 699
Fsp4HI	GCNGC	2 cut(s)	257, 699
FspBI	CTAG	1 cut(s)	868
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	257, 699
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	762, 861
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	88, 112, 245
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	661, 719, 787
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	9 cut(s)	57, 157, 195, 233, 660, 672, 752, 777, 792
Hpy188III	TCNNGA	4 cut(s)	167, 302, 617, 840
HpyCH4V	TGCA	7 cut(s)	108, 313, 329, 517, 605, 667, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	545, 749, 789
Hsp92II	CATG	3 cut(s)	88, 112, 245
HspAI	GCGC	1 cut(s)	337
Ksp22I	TGATCA	2 cut(s)	169, 238
Kzo9I	GATC	4 cut(s)	169, 238, 672, 823
LguI	GCTCTTC	2 cut(s)	18, 570
LpnPI	CCDG	7 cut(s)	129, 195, 299, 537, 687, 708, 843
Lsp1109I	GCAGC	2 cut(s)	268, 685
LweI	GCATC	3 cut(s)	494, 614, 676
MaeI	CTAG	1 cut(s)	868
MaeIII	GTNAC	5 cut(s)	5, 131, 202, 548, 796
MalI	GATC	4 cut(s)	171, 240, 674, 825
MboI	GATC	4 cut(s)	169, 238, 672, 823
MboII	GAAGA	6 cut(s)	5, 557, 605, 632, 635, 818
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	672
MlsI	TGGCCA	1 cut(s)	861
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	1 cut(s)	781
MnlI	CCTC	8 cut(s)	174, 298, 343, 522, 613, 758, 802, 814
Mox20I	TGGCCA	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	2 cut(s)	18, 282
Msp20I	TGGCCA	1 cut(s)	861
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	331, 700
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	4 cut(s)	169, 238, 672, 823
NlaIII	CATG	3 cut(s)	88, 112, 245
NlaIV	GGNNCC	3 cut(s)	115, 422, 774
NmuCI	GTSAC	3 cut(s)	131, 548, 796
PciSI	GCTCTTC	2 cut(s)	18, 570
PctI	GAATGC	2 cut(s)	331, 700
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	661, 719
PkrI	GCNGC	2 cut(s)	258, 700
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	115, 422, 774
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	672
SapI	GCTCTTC	2 cut(s)	18, 570
SaqAI	TTAA	2 cut(s)	18, 282
SatI	GCNGC	2 cut(s)	257, 699
Sau3AI	GATC	4 cut(s)	169, 238, 672, 823
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	781
SetI	ASST	9 cut(s)	191, 214, 292, 318, 354, 381, 546, 750, 859
SfaNI	GCATC	3 cut(s)	494, 614, 676
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	114
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	868
StyI	CCWWGG	1 cut(s)	379
TaqI	TCGA	1 cut(s)	626
TfiI	GAWTC	2 cut(s)	661, 719
Tru1I	TTAA	2 cut(s)	18, 282
Tru9I	TTAA	2 cut(s)	18, 282
TscAI	CASTG	2 cut(s)	565, 607
TseFI	GTSAC	3 cut(s)	131, 548, 796
TseI	GCWGC	2 cut(s)	256, 698
Tsp45I	GTSAC	3 cut(s)	131, 548, 796
TspDTI	ATGAA	4 cut(s)	95, 101, 429, 675
TspRI	CASTG	2 cut(s)	565, 607
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	4 cut(s)	227, 448, 654, 845
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.