Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Forward (+)

11287041 .. 11290064

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGTAACGCTCTTCTTAATTCCCATCTTTACAACTTTGGAAATACTGATTTTCAGATGACAAATTGGGATACTCAAATGAACATGAATAGAACGATTGGCTTTTGCATGGGGTCCAAAGAAAGTGACAACCATAACAGTGTTTCTGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCCGGTTATTCCAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCAGACAATGTTGTTTGACAAGAGTATTAATTCAGCTACCCAATTTCAAGAAGATTTTCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGTGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAGTAGGAAGTTGCAAGTTCCAGTGAGGCGAAGCCACAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCGATTTACATCATACTTCTTCAACAACAAATTCAGCAGAATCTGCATCGGATTTTTAGTAGTTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAAAGGCCTTTGTTTGTATCCGATTTCCATGACTCAGAAAGTGACTATGGAAGAGGGTTTTTATGAGGATCATCTTTCTACATCAAGAAAATTTGTCATAGCTAACCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

33.1

Weight (kDa)

7.13

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	837
AcsI	RAATTY	4 cut(s)	230, 451, 657, 851
AgsI	TTSAA	6 cut(s)	305, 393, 414, 572, 620, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	3 cut(s)	293, 547, 863
AluI	AGCT	3 cut(s)	293, 547, 863
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	837
AlwNI	CAGNNNCTG	1 cut(s)	670
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	4 cut(s)	230, 451, 657, 851
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	2 cut(s)	312, 409
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	1 cut(s)	33
BciVI	GTATCC	2 cut(s)	64, 789
BclI	TGATCA	2 cut(s)	172, 241
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	874
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	343
BfuI	GTATCC	2 cut(s)	64, 789
BisI	GCNGC	1 cut(s)	705
BlsI	GCNGC	1 cut(s)	706
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	115, 425
BmsI	GCATC	2 cut(s)	497, 682
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	635
BsaJI	CCNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	527
Bse8I	GATNNNNATC	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	624, 769, 809
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	691
BshFI	GGCC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	2 cut(s)	334, 706
BsnI	GGCC	1 cut(s)	768
Bsp143I	GATC	3 cut(s)	172, 241, 829
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	3 cut(s)	623, 768, 808
BspLI	GGNNCC	2 cut(s)	115, 425
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	1 cut(s)	837
BspQI	GCTCTTC	2 cut(s)	18, 573
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	172, 241, 829
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	140, 509
Bst6I	CTCTTC	3 cut(s)	18, 573, 807
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstDEI	CTNAG	4 cut(s)	548, 610, 755, 795
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	3 cut(s)	175, 244, 832
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	172, 241, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 670
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	691
BsuI	GTATCC	2 cut(s)	64, 789
BsuRI	GGCC	1 cut(s)	768
BtsI	GCAGTG	2 cut(s)	561, 603
BtsIMutI	CAGTG	4 cut(s)	145, 534, 561, 603
CaiI	CAGNNNCTG	1 cut(s)	670
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	4 cut(s)	85, 109, 245, 790
CviJI	RGCY	9 cut(s)	102, 212, 293, 540, 547, 626, 741, 768, 863
CviKI_1	RGCY	9 cut(s)	102, 212, 293, 540, 547, 626, 741, 768, 863
DdeI	CTNAG	4 cut(s)	548, 610, 755, 795
DpnI	GATC	3 cut(s)	174, 243, 831
DpnII	GATC	3 cut(s)	172, 241, 829
Eam1104I	CTCTTC	3 cut(s)	18, 573, 807
EarI	CTCTTC	3 cut(s)	18, 573, 807
Eco130I	CCWWGG	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	88, 112, 248, 793
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	84, 108, 244, 789
FbaI	TGATCA	2 cut(s)	172, 241
Fnu4HI	GCNGC	1 cut(s)	705
Fsp4HI	GCNGC	1 cut(s)	705
FspBI	CTAG	1 cut(s)	874
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	705
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	88, 112, 248, 793
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	3 cut(s)	667, 725, 793
HpaII	CCGG	1 cut(s)	213
Hpy188I	TCNGA	8 cut(s)	57, 160, 198, 236, 678, 758, 783, 798
Hpy188III	TCNNGA	5 cut(s)	147, 170, 305, 620, 846
HpyCH4III	ACNGT	2 cut(s)	140, 509
HpyCH4V	TGCA	5 cut(s)	108, 332, 520, 673, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 670
HpyF3I	CTNAG	4 cut(s)	548, 610, 755, 795
Hsp92II	CATG	4 cut(s)	88, 112, 248, 793
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	2 cut(s)	172, 241
Kzo9I	GATC	3 cut(s)	172, 241, 829
LguI	GCTCTTC	2 cut(s)	18, 573
LpnPI	CCDG	6 cut(s)	132, 226, 302, 540, 693, 714
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	2 cut(s)	497, 682
MaeI	CTAG	1 cut(s)	874
MaeIII	GTNAC	5 cut(s)	5, 125, 205, 551, 802
MalI	GATC	3 cut(s)	174, 243, 831
MboI	GATC	3 cut(s)	172, 241, 829
MboII	GAAGA	6 cut(s)	5, 320, 560, 608, 638, 824
MfeI	CAATTG	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	787
MnlI	CCTC	8 cut(s)	177, 346, 525, 616, 619, 764, 808, 820
MroXI	GAANNNNTTC	2 cut(s)	312, 409
MseI	TTAA	2 cut(s)	18, 285
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	2 cut(s)	334, 706
MwoI	GCNNNNNNNGC	2 cut(s)	209, 670
NdeII	GATC	3 cut(s)	172, 241, 829
NlaIII	CATG	4 cut(s)	88, 112, 248, 793
NlaIV	GGNNCC	2 cut(s)	115, 425
NmuCI	GTSAC	3 cut(s)	125, 551, 802
PceI	AGGCCT	1 cut(s)	768
PciSI	GCTCTTC	2 cut(s)	18, 573
PctI	GAATGC	2 cut(s)	334, 706
PdmI	GAANNNNTTC	2 cut(s)	312, 409
PfeI	GAWTC	2 cut(s)	667, 725
PkrI	GCNGC	1 cut(s)	706
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PshBI	ATTAAT	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	115, 425
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	2 cut(s)	18, 573
SaqAI	TTAA	2 cut(s)	18, 285
SatI	GCNGC	1 cut(s)	705
Sau3AI	GATC	3 cut(s)	172, 241, 829
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	787
SetI	ASST	8 cut(s)	194, 295, 321, 357, 384, 549, 756, 865
SfaNI	GCATC	2 cut(s)	497, 682
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	138
SseBI	AGGCCT	1 cut(s)	768
SspMI	CTAG	1 cut(s)	874
StuI	AGGCCT	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	140, 509
TaqI	TCGA	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	667, 725
Tru1I	TTAA	2 cut(s)	18, 285
Tru9I	TTAA	2 cut(s)	18, 285
TscAI	CASTG	4 cut(s)	145, 534, 568, 610
TseFI	GTSAC	3 cut(s)	125, 551, 802
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	3 cut(s)	125, 551, 802
TspDTI	ATGAA	4 cut(s)	95, 101, 432, 681
TspRI	CASTG	4 cut(s)	145, 534, 568, 610
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	4 cut(s)	230, 451, 657, 851
XmnI	GAANNNNTTC	2 cut(s)	312, 409
XspI	CTAG	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.