helix loop helix domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 160 |
| AclWI | GGATC | 2 cut(s) | 51, 64 |
| AgsI | TTSAA | 1 cut(s) | 245 |
| AjnI | CCWGG | 1 cut(s) | 213 |
| AluBI | AGCT | 2 cut(s) | 98, 403 |
| AluI | AGCT | 2 cut(s) | 98, 403 |
| AlwI | GGATC | 2 cut(s) | 51, 64 |
| ApeKI | GCWGC | 2 cut(s) | 98, 121 |
| AsuHPI | GGTGA | 1 cut(s) | 329 |
| BamHI | GGATCC | 1 cut(s) | 56 |
| BbvI | GCAGC | 2 cut(s) | 85, 133 |
| BccI | CCATC | 1 cut(s) | 175 |
| BciT130I | CCWGG | 1 cut(s) | 215 |
| BfmI | CTRYAG | 3 cut(s) | 99, 119, 153 |
| BfuAI | ACCTGC | 1 cut(s) | 160 |
| BisI | GCNGC | 2 cut(s) | 99, 122 |
| BlsI | GCNGC | 2 cut(s) | 100, 123 |
| Bme1390I | CCNGG | 1 cut(s) | 215 |
| BmiI | GGNNCC | 1 cut(s) | 58 |
| BmrFI | CCNGG | 1 cut(s) | 215 |
| BmsI | GCATC | 3 cut(s) | 4, 74, 403 |
| BseBI | CCWGG | 1 cut(s) | 215 |
| BseGI | GGATG | 3 cut(s) | 19, 65, 131 |
| BseXI | GCAGC | 2 cut(s) | 85, 133 |
| Bsp143I | GATC | 1 cut(s) | 56 |
| BspLI | GGNNCC | 1 cut(s) | 58 |
| BspMAI | CTGCAG | 3 cut(s) | 103, 123, 157 |
| BspMI | ACCTGC | 1 cut(s) | 160 |
| BspPI | GGATC | 2 cut(s) | 51, 64 |
| BssMI | GATC | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 1 cut(s) | 215 |
| Bst6I | CTCTTC | 1 cut(s) | 117 |
| BstF5I | GGATG | 3 cut(s) | 19, 65, 131 |
| BstKTI | GATC | 1 cut(s) | 59 |
| BstMBI | GATC | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 400 |
| BstNI | CCWGG | 1 cut(s) | 215 |
| BstSCI | CCNGG | 1 cut(s) | 213 |
| BstSFI | CTRYAG | 3 cut(s) | 99, 119, 153 |
| BstV1I | GCAGC | 2 cut(s) | 85, 133 |
| BstX2I | RGATCY | 1 cut(s) | 56 |
| BstYI | RGATCY | 1 cut(s) | 56 |
| BtsCI | GGATG | 3 cut(s) | 19, 65, 131 |
| BveI | ACCTGC | 1 cut(s) | 160 |
| CviAII | CATG | 5 cut(s) | 28, 52, 83, 91, 262 |
| CviJI | RGCY | 3 cut(s) | 98, 233, 403 |
| CviKI_1 | RGCY | 3 cut(s) | 98, 233, 403 |
| DpnI | GATC | 1 cut(s) | 58 |
| DpnII | GATC | 1 cut(s) | 56 |
| Eam1104I | CTCTTC | 1 cut(s) | 117 |
| EarI | CTCTTC | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 213 |
| FaeI | CATG | 5 cut(s) | 31, 55, 86, 94, 265 |
| FaiI | YATR | 8 cut(s) | 29, 53, 84, 92, 186, 263, 343, 351 |
| FatI | CATG | 5 cut(s) | 27, 51, 82, 90, 261 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 122 |
| FokI | GGATG | 3 cut(s) | 26, 52, 118 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 122 |
| GluI | GCNGC | 2 cut(s) | 99, 122 |
| Hin1II | CATG | 5 cut(s) | 31, 55, 86, 94, 265 |
| HphI | GGTGA | 1 cut(s) | 329 |
| Hpy188I | TCNGA | 2 cut(s) | 70, 199 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 7 cut(s) | 17, 51, 101, 121, 155, 265, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 400 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92II | CATG | 5 cut(s) | 31, 55, 86, 94, 265 |
| Kzo9I | GATC | 1 cut(s) | 56 |
| LmnI | GCTCC | 2 cut(s) | 408, 421 |
| LpnPI | CCDG | 4 cut(s) | 156, 165, 200, 227 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 133 |
| LweI | GCATC | 3 cut(s) | 4, 74, 403 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MaeIII | GTNAC | 2 cut(s) | 74, 317 |
| MalI | GATC | 1 cut(s) | 58 |
| MboI | GATC | 1 cut(s) | 56 |
| MboII | GAAGA | 1 cut(s) | 104 |
| MfeI | CAATTG | 1 cut(s) | 285 |
| MflI | RGATCY | 1 cut(s) | 56 |
| MluCI | AATT | 7 cut(s) | 7, 39, 160, 239, 285, 338, 376 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 3 cut(s) | 126, 146, 283 |
| MseI | TTAA | 1 cut(s) | 159 |
| MspR9I | CCNGG | 1 cut(s) | 215 |
| MunI | CAATTG | 1 cut(s) | 285 |
| MvaI | CCWGG | 1 cut(s) | 215 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 400 |
| NdeII | GATC | 1 cut(s) | 56 |
| NlaIII | CATG | 5 cut(s) | 31, 55, 86, 94, 265 |
| NlaIV | GGNNCC | 1 cut(s) | 58 |
| NmuCI | GTSAC | 2 cut(s) | 74, 317 |
| PfoI | TCCNGGA | 1 cut(s) | 213 |
| PkrI | GCNGC | 2 cut(s) | 100, 123 |
| Psp6I | CCWGG | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 1 cut(s) | 58 |
| PstI | CTGCAG | 3 cut(s) | 103, 123, 157 |
| PsuI | RGATCY | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| SatI | GCNGC | 2 cut(s) | 99, 122 |
| Sau3AI | GATC | 1 cut(s) | 56 |
| ScrFI | CCNGG | 1 cut(s) | 215 |
| SetI | ASST | 7 cut(s) | 100, 146, 154, 283, 294, 405, 441 |
| SfaNI | GCATC | 3 cut(s) | 4, 74, 403 |
| SfcI | CTRYAG | 3 cut(s) | 99, 119, 153 |
| Sse9I | AATT | 7 cut(s) | 7, 39, 160, 239, 285, 338, 376 |
| StyD4I | CCNGG | 1 cut(s) | 213 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TasI | AATT | 7 cut(s) | 7, 39, 160, 239, 285, 338, 376 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TseFI | GTSAC | 2 cut(s) | 74, 317 |
| TseI | GCWGC | 2 cut(s) | 98, 121 |
| Tsp45I | GTSAC | 2 cut(s) | 74, 317 |
| TspDTI | ATGAA | 1 cut(s) | 44 |