Rorug01G0325200

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002277
Physical Location & Seq
Reverse (-)
44449214 .. 44450853
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0325200.1

Sequence Viewer

Length: 741 bp
ATGAATAGGGTTGGTTCTGATTTTGTTGTTTTTGTGTGTTGGGTTTGGGCAGCTTTGTTGGGCACTGAGACAGAGGCTCGTGACATGGAGTGGTTCTTCTTCACCGCAAAGGCTTACAAGTACAACAAAAGCTGTCGCTCGAATCGGAGCACGAAGAAGATCCACTGGAAAATCACAGGGAAGGAGCGTGGGATTAAAGCTCAACGATACAAAGCTGTTATCGGGAAGAAGAGGACATTGACTTTTTACCAGGGGCGTGCGCCGAAATCGAAGAAGACCAGCTGGGTTATTCATGAGCACTATCTTCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCTCTTGAAGATTAGATCAGATAGGAAGGATTCTCCGGTCAGTAATGAAGGAGAACCCAGAAGCACGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGAAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTCTTATCTATTAGATGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTGTGTATAATGTGTTTCCACAGCTACGTGATCCGCCAGAACAAAATCTGGATTCACTCTTTGGTCCACATCAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.93

Weight (kDa)

5.8

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 100 4.6e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 538
AciI CCGC 2 cut(s) 105, 695
AclWI GGATC 2 cut(s) 154, 686
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 314, 538
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 2 cut(s) 370, 642
AjnI CCWGG 3 cut(s) 249, 307, 342
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 8 cut(s) 53, 132, 200, 215, 282, 538, 545, 685
AluI AGCT 8 cut(s) 53, 132, 200, 215, 282, 538, 545, 685
Alw21I GWGCWC 2 cut(s) 152, 300
Alw26I GTCTC 3 cut(s) 62, 368, 653
AlwI GGATC 2 cut(s) 154, 686
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 50, 501
AsiGI ACCGGT 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 340, 725
AsuHPI GGTGA 4 cut(s) 94, 359, 513, 585
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 65
BauI CACGAG 2 cut(s) 78, 427
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 152, 300
BbvCI CCTCAGC 2 cut(s) 483, 508
BbvI GCAGC 2 cut(s) 62, 488
BccI CCATC 3 cut(s) 308, 483, 620
BciT130I CCWGG 3 cut(s) 251, 309, 344
BciVI GTATCC 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 62, 368, 653
BfmI CTRYAG 1 cut(s) 515
BfuI GTATCC 1 cut(s) 339
BisI GCNGC 2 cut(s) 51, 502
BlsI GCNGC 2 cut(s) 52, 503
Bme1390I CCNGG 3 cut(s) 251, 309, 344
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 2 cut(s) 340, 725
BmrFI CCNGG 3 cut(s) 251, 309, 344
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 483, 508
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 250, 342, 343
BsaWI WCCGGW 2 cut(s) 397, 523
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 538
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 3 cut(s) 251, 309, 344
BseDI CCNNGG 3 cut(s) 250, 342, 343
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 2 cut(s) 314, 538
BseMII CTCAG 3 cut(s) 57, 497, 522
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 62, 488
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 152, 300
BsiSI CCGG 2 cut(s) 398, 524
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 2 cut(s) 314, 538
BsmAI GTCTC 3 cut(s) 62, 368, 653
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 65, 152, 300
Bsp143I GATC 3 cut(s) 159, 377, 691
BspACI CCGC 2 cut(s) 105, 695
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 58, 496, 521
BspHI TCATGA 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 519
BspPI GGATC 2 cut(s) 154, 686
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 250, 342, 343
BssMI GATC 3 cut(s) 159, 377, 691
BssSI CACGAG 2 cut(s) 78, 427
Bst2BI CACGAG 2 cut(s) 78, 427
Bst2UI CCWGG 3 cut(s) 251, 309, 344
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 258, 339
BstDEI CTNAG 3 cut(s) 66, 483, 508
BstF5I GGATG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 162, 380, 694
BstMAI GTCTC 3 cut(s) 62, 368, 653
BstMBI GATC 3 cut(s) 159, 377, 691
BstNI CCWGG 3 cut(s) 251, 309, 344
BstSCI CCNGG 3 cut(s) 249, 307, 342
BstSFI CTRYAG 1 cut(s) 515
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 62, 488
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuI GTATCC 1 cut(s) 339
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 3 cut(s) 63, 163, 512
Cac8I GCNNGC 2 cut(s) 258, 339
CaiI CAGNNNCTG 1 cut(s) 490
CciI TCATGA 1 cut(s) 292
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 340, 725
Csp6I GTAC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 2 cut(s) 85, 293
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 66, 483, 508
DpnI GATC 3 cut(s) 161, 379, 693
DpnII GATC 3 cut(s) 159, 377, 691
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EciI GGCGGA 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 249, 307, 342
FaeI CATG 2 cut(s) 88, 296
FaiI YATR 4 cut(s) 86, 294, 669, 739
FaqI GGGAC 1 cut(s) 514
FatI CATG 2 cut(s) 84, 292
Fnu4HI GCNGC 2 cut(s) 51, 502
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 2 cut(s) 51, 502
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 51, 502
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 341
HapII CCGG 2 cut(s) 398, 524
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 88, 296
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 5 cut(s) 142, 392, 445, 611, 713
HpaII CCGG 2 cut(s) 398, 524
HphI GGTGA 4 cut(s) 94, 359, 513, 585
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 5 cut(s) 19, 147, 333, 382, 439
Hpy188III TCNNGA 7 cut(s) 80, 223, 293, 367, 449, 491, 710
Hpy8I GTNNAC 1 cut(s) 728
HpyAV CCTTC 3 cut(s) 175, 382, 404
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 3 cut(s) 517, 553, 589
HpyF3I CTNAG 3 cut(s) 66, 483, 508
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 2 cut(s) 88, 296
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 3 cut(s) 159, 377, 691
LmnI GCTCC 3 cut(s) 147, 184, 509
Lsp1109I GCAGC 2 cut(s) 62, 488
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 80, 347, 519, 562
MalI GATC 3 cut(s) 161, 379, 693
MboI GATC 3 cut(s) 159, 377, 691
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 65, 152, 300
MnlI CCTC 6 cut(s) 67, 225, 445, 492, 498, 517
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 2 cut(s) 398, 524
MspR9I CCNGG 3 cut(s) 251, 309, 344
MvaI CCWGG 3 cut(s) 251, 309, 344
NdeII GATC 3 cut(s) 159, 377, 691
NlaIII CATG 2 cut(s) 88, 296
NmuCI GTSAC 4 cut(s) 80, 347, 519, 562
OliI CACNNNNGTG 1 cut(s) 431
PagI TCATGA 1 cut(s) 292
PasI CCCWGGG 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 5 cut(s) 142, 392, 445, 611, 713
PflMI CCANNNNNTGG 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 2 cut(s) 52, 503
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 3 cut(s) 249, 307, 342
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 3 cut(s) 249, 307, 342
PspPI GGNCC 2 cut(s) 340, 725
PstI CTGCAG 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 51, 502
Sau3AI GATC 3 cut(s) 159, 377, 691
Sau96I GGNCC 2 cut(s) 340, 725
ScrFI CCNGG 3 cut(s) 251, 309, 344
SduI GDGCHC 3 cut(s) 65, 152, 300
SfcI CTRYAG 1 cut(s) 515
SgrAI CRCCGGYG 1 cut(s) 523
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 431
SsiI CCGC 2 cut(s) 105, 695
StyD4I CCNGG 3 cut(s) 249, 307, 342
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 140, 269
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 5 cut(s) 142, 392, 445, 611, 713
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 70, 170, 519
TseFI GTSAC 4 cut(s) 80, 347, 519, 562
TseI GCWGC 2 cut(s) 50, 501
Tsp45I GTSAC 4 cut(s) 80, 347, 519, 562
TspDTI ATGAA 6 cut(s) 17, 281, 423, 458, 648, 666
TspRI CASTG 3 cut(s) 70, 170, 519
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.