Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

43071987 .. 43075109

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGACAAATTGGGATACTCAAATGAACATGAATAGAAAGATTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACCATAACAGTGTTTCTGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCAGGTTATTCCAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCAGCCAATGTTGTTTGACAAGAGTATTAATTCAGCTACCCAATTTCAAGAAGATTTTCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATAGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCAAAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCGATTTGCATCGTGCTTCTTCAACAACAAATTCAGAATCTGCATCGGATCTTTAGTAATTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAAAGGCCTTTGTTTGGTTCCTATTTCCATGACTCAGAAAGTGACTATGGAAGAGGGTTTTGATGAGGATCATCTTTCTACATCAAGAAAATTTGTCATAGCTAACCATTTCAAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

31.13

Weight (kDa)

7.7

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	632, 783
AcsI	RAATTY	4 cut(s)	179, 400, 606, 797
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	7 cut(s)	254, 342, 363, 521, 569, 599, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	242, 496, 809
AluI	AGCT	3 cut(s)	242, 496, 809
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	632, 783
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	2 cut(s)	208, 650
ApoI	RAATTY	4 cut(s)	179, 400, 606, 797
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	2 cut(s)	261, 358
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	220, 637
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	2 cut(s)	121, 190
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	826
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	209, 651
BlsI	GCNGC	2 cut(s)	210, 652
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	58, 374, 726
BmsI	GCATC	3 cut(s)	446, 594, 628
BpmI	CTGGAG	1 cut(s)	117
BsaBI	GATNNNNATC	2 cut(s)	584, 774
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse8I	GATNNNNATC	2 cut(s)	584, 774
BseDI	CCNNGG	1 cut(s)	331
BseJI	GATNNNNATC	2 cut(s)	584, 774
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	573, 715, 755
BseXI	GCAGC	2 cut(s)	220, 637
BshFI	GGCC	1 cut(s)	714
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	2 cut(s)	283, 652
BsnI	GGCC	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	121, 190, 624, 775
BspANI	GGCC	1 cut(s)	714
BspCNI	CTCAG	3 cut(s)	572, 714, 754
BspLI	GGNNCC	3 cut(s)	58, 374, 726
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	632, 783
BspQI	GCTCTTC	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	121, 190, 624, 775
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	2 cut(s)	522, 753
BstDEI	CTNAG	4 cut(s)	497, 559, 701, 741
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	4 cut(s)	124, 193, 627, 778
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	121, 190, 624, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	220, 637
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	714
BtsI	GCAGTG	2 cut(s)	510, 552
BtsIMutI	CAGTG	3 cut(s)	94, 510, 552
BveI	ACCTGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	4 cut(s)	28, 52, 194, 736
CviJI	RGCY	9 cut(s)	45, 211, 242, 489, 496, 575, 687, 714, 809
CviKI_1	RGCY	9 cut(s)	45, 211, 242, 489, 496, 575, 687, 714, 809
DdeI	CTNAG	4 cut(s)	497, 559, 701, 741
DpnI	GATC	4 cut(s)	123, 192, 626, 777
DpnII	GATC	4 cut(s)	121, 190, 624, 775
Eam1104I	CTCTTC	2 cut(s)	522, 753
EarI	CTCTTC	2 cut(s)	522, 753
Eco130I	CCWWGG	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	31, 55, 197, 739
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	27, 51, 193, 735
FbaI	TGATCA	2 cut(s)	121, 190
Fnu4HI	GCNGC	2 cut(s)	209, 651
Fsp4HI	GCNGC	2 cut(s)	209, 651
FspBI	CTAG	1 cut(s)	826
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	209, 651
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	714
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	31, 55, 197, 739
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	613, 671, 739
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	7 cut(s)	109, 147, 185, 612, 624, 704, 744
Hpy188III	TCNNGA	5 cut(s)	96, 119, 254, 569, 792
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	6 cut(s)	51, 281, 469, 585, 619, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	4 cut(s)	497, 559, 701, 741
Hsp92II	CATG	4 cut(s)	31, 55, 197, 739
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	2 cut(s)	121, 190
Kzo9I	GATC	4 cut(s)	121, 190, 624, 775
LguI	GCTCTTC	1 cut(s)	522
LpnPI	CCDG	6 cut(s)	81, 147, 251, 489, 639, 660
Lsp1109I	GCAGC	2 cut(s)	220, 637
LweI	GCATC	3 cut(s)	446, 594, 628
MaeI	CTAG	1 cut(s)	826
MaeIII	GTNAC	4 cut(s)	74, 154, 500, 748
MalI	GATC	4 cut(s)	123, 192, 626, 777
MboI	GATC	4 cut(s)	121, 190, 624, 775
MboII	GAAGA	5 cut(s)	269, 509, 557, 587, 770
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	624
MlyI	GAGTC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	126, 295, 474, 565, 568, 710, 754, 766
MroXI	GAANNNNTTC	2 cut(s)	261, 358
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	283, 652
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	4 cut(s)	121, 190, 624, 775
NlaIII	CATG	4 cut(s)	31, 55, 197, 739
NlaIV	GGNNCC	3 cut(s)	58, 374, 726
NmuCI	GTSAC	3 cut(s)	74, 500, 748
PceI	AGGCCT	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	522
PctI	GAATGC	2 cut(s)	283, 652
PdmI	GAANNNNTTC	2 cut(s)	261, 358
PfeI	GAWTC	2 cut(s)	613, 671
PkrI	GCNGC	2 cut(s)	210, 652
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	58, 374, 726
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	209, 651
Sau3AI	GATC	4 cut(s)	121, 190, 624, 775
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	733
SetI	ASST	9 cut(s)	143, 166, 244, 270, 306, 333, 498, 702, 811
SfaNI	GCATC	3 cut(s)	446, 594, 628
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	714
SspMI	CTAG	1 cut(s)	826
StuI	AGGCCT	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	578
TfiI	GAWTC	2 cut(s)	613, 671
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	94, 517, 559
TseFI	GTSAC	3 cut(s)	74, 500, 748
TseI	GCWGC	2 cut(s)	208, 650
Tsp45I	GTSAC	3 cut(s)	74, 500, 748
TspDTI	ATGAA	4 cut(s)	38, 44, 381, 627
TspRI	CASTG	3 cut(s)	94, 517, 559
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	4 cut(s)	179, 400, 606, 797
XmnI	GAANNNNTTC	2 cut(s)	261, 358
XspI	CTAG	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.