Rorug01G0325100

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002277
Physical Location & Seq
Reverse (-)
44437135 .. 44439106
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0325100.1

Sequence Viewer

Length: 1533 bp
ATGATGATGAGCAGCGACCGCATCACACTTCCAAAGGGTTTCCGATTCCAGCCCACCGAGGAGGAGCTGCTGAGTCATTACTTGGTCAAGAAGAATCATCAGCGCAAGGATCCCGAAATCGAGGCGATCATCCCTGACATCAATGTGTGCGAGCACGAGCCTCGCGACTTACCAGCCCTGGTGTTCACAAGGGCGAAATTTCTGCCGGCCTCTTCGAACATGGAGTGGCACTTCTTCAGTCGGCGAGTTTTTAAACACAGCAAAAGCGAAGGCAAAGGTAAAGGCAAAAGCAAAGGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGATGACAAACGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTACCGAAGAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACTAAGCCCAATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGCACAAGTCAGGCAAGTCTGATGATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAGCGGTAGCTGCAGTATGGTCTCCAATGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCGATTCCCAATGGCAATAATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTTGATGTTGAAAATCAAGCATCCAAACACCTGGAAAATGATCTTTTGATTCCCAATGGCAATGATAATGAAGCTGAACATGGAAGTAGCTGCCCCATCACCTCTGGTTTCGATAATGAAGCTGCAGCAGATGGTATGCTTACAGAAGCAGAAGAATACCTGGCATTCAAGAAGCTGGAAGAATTTTATGGCAATGAGCAAGATGTTAGAGGCTCGCAAACTGATCCATGTTGTATTGATAAGAATGATCTTTCGATCTCTGTCAAAGGTCAACCTGCTGATAGCTGCAATTCATCTGATTCTGATATGGTTGAAGAGTTACTTGATGAGCCAGGACATCTGGCCTTACCCCTTCATCCACCTTCGTTACCTCAACTGCAGTCACCAATATACACAAAGCTTGTCACCACCAATGCCCATAATGATGAATCTCGTAAGAGGAAATATCCATTTGGGGATAATGATCCTTTTCTTACGAAGAAAAATCATATTGATGTAGATAGCAACTCTTCATCAAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCTGGGATTTGATTCATTTCAGTCGCAGAAACTACCATCAATAAACAGAGAACAGGGAGATTTTCCCCATGACAATAATTTAATTGAATGGGATAAGTTGCCATCTATAACAGAAGGTTTTGACTCTTCTCTCGAGTTCTCAGATACATTTATTGATTGCTACCTCTGTGACAGAAACACCGAAGTCATCTCTGTATCAGTAAACGATTATTCTACATCAGCCATTGGAGAAATACTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
No domains found.

Protein Analysis

510

Amino Acids

56.9

Weight (kDa)

4.82

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 153 2.8e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 991
AccII CGCG 1 cut(s) 165
AciI CCGC 5 cut(s) 19, 508, 585, 690, 1244
AclWI GGATC 8 cut(s) 104, 117, 407, 548, 618, 631, 926, 1166
AcsI RAATTY 3 cut(s) 197, 890, 1225
AcuI CTGAAG 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 6 cut(s) 514, 614, 719, 877, 1022, 1370
AjnI CCWGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
AloI GAACNNNNNNTCC 2 cut(s) 631, 663
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 8 cut(s) 104, 117, 407, 548, 618, 631, 926, 1166
Ama87I CYCGRG 1 cut(s) 1415
AoxI GGCC 4 cut(s) 207, 365, 705, 1050
ApeKI GCWGC 9 cut(s) 12, 67, 591, 696, 798, 830, 833, 993, 1241
ApoI RAATTY 3 cut(s) 197, 890, 1225
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 584, 799, 1083, 1105
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 1415
BamHI GGATCC 2 cut(s) 109, 623
BauI CACGAG 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 9 cut(s) 24, 54, 578, 683, 785, 817, 845, 980, 1228
BccI CCATC 5 cut(s) 560, 812, 833, 1327, 1393
BcgI CGANNNNNNTGC 4 cut(s) 143, 177, 184, 218
BciT130I CCWGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 607
BfmI CTRYAG 4 cut(s) 592, 697, 831, 1085
BfuAI ACCTGC 1 cut(s) 991
Bme1390I CCNGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
BmeT110I CYCGRG 1 cut(s) 1415
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 3 cut(s) 111, 328, 625
BmrFI CCNGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 30, 737, 1237
BmuI ACTGGG 1 cut(s) 448
BplI GAGNNNNNCTC 1 cut(s) 1503
Bpu14I TTCGAA 1 cut(s) 215
BsaBI GATNNNNATC 2 cut(s) 540, 1170
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 57, 177, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 775, 907
Bse8I GATNNNNATC 2 cut(s) 540, 1170
BseBI CCWGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
BseDI CCNNGG 3 cut(s) 57, 177, 318
BseGI GGATG 5 cut(s) 129, 556, 728, 1063, 1252
BseJI GATNNNNATC 2 cut(s) 540, 1170
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 2 cut(s) 775, 907
BseMII CTCAG 2 cut(s) 62, 1437
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 2 cut(s) 74, 77
BseXI GCAGC 9 cut(s) 24, 54, 578, 683, 785, 817, 845, 980, 1228
BseYI CCCAGC 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 209, 367, 707, 1052
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 4 cut(s) 209, 367, 707, 1052
Bso31I GGTCTC 1 cut(s) 607
BsoBI CYCGRG 1 cut(s) 1415
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 156
Bsp68I TCGCGA 1 cut(s) 165
BspACI CCGC 5 cut(s) 19, 508, 585, 690, 1244
BspANI GGCC 4 cut(s) 209, 367, 707, 1052
BspCNI CTCAG 2 cut(s) 63, 1436
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 111, 328, 625
BspMAI CTGCAG 4 cut(s) 596, 701, 835, 1089
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 8 cut(s) 104, 117, 407, 548, 618, 631, 926, 1166
BspT104I TTCGAA 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 2 cut(s) 775, 907
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 3 cut(s) 57, 177, 318
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
Bst4CI ACNGT 2 cut(s) 561, 643
Bst6I CTCTTC 5 cut(s) 217, 389, 1017, 1222, 1414
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 152, 207, 923
BstDEI CTNAG 3 cut(s) 71, 465, 1423
BstF5I GGATG 5 cut(s) 129, 556, 728, 1063, 1252
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 607
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 18, 591, 696, 1247
BstNI CCWGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
BstSCI CCNGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
BstSFI CTRYAG 4 cut(s) 592, 697, 831, 1085
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 9 cut(s) 24, 54, 578, 683, 785, 817, 845, 980, 1228
BstX2I RGATCY 3 cut(s) 109, 399, 623
BstXI CCANNNNNNTGG 2 cut(s) 634, 739
BstYI RGATCY 3 cut(s) 109, 399, 623
BsuRI GGCC 4 cut(s) 209, 367, 707, 1052
BtgZI GCGATG 2 cut(s) 360, 579
BtsCI GGATG 5 cut(s) 129, 556, 728, 1063, 1252
BtsIMutI CAGTG 1 cut(s) 557
BtuMI TCGCGA 1 cut(s) 165
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 3 cut(s) 152, 207, 923
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 366
CviAII CATG 6 cut(s) 220, 449, 683, 788, 936, 1352
DdeI CTNAG 3 cut(s) 71, 465, 1423
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 5 cut(s) 217, 389, 1017, 1222, 1414
EarI CTCTTC 5 cut(s) 217, 389, 1017, 1222, 1414
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 1415
EcoRII CCWGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 6 cut(s) 223, 452, 686, 791, 939, 1355
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 1014, 1046
FaqI GGGAC 1 cut(s) 506
FatI CATG 6 cut(s) 219, 448, 682, 787, 935, 1351
FbaI TGATCA 1 cut(s) 541
FokI GGATG 5 cut(s) 116, 563, 715, 1050, 1259
GlaI GCGC 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 638
HaeIII GGCC 4 cut(s) 209, 367, 707, 1052
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 105
Hin1II CATG 6 cut(s) 223, 452, 686, 791, 939, 1355
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 980
HindII GTYRAC 1 cut(s) 980
HindIII AAGCTT 1 cut(s) 1106
HpaII CCGG 1 cut(s) 206
HphI GGTGA 4 cut(s) 584, 799, 1083, 1105
Hpy166II GTNNAC 4 cut(s) 186, 575, 980, 1486
Hpy188I TCNGA 9 cut(s) 44, 376, 478, 535, 651, 1006, 1012, 1231, 1426
Hpy188III TCNNGA 7 cut(s) 88, 113, 164, 403, 877, 1256, 1415
Hpy8I GTNNAC 4 cut(s) 186, 575, 980, 1486
HpyAV CCTTC 6 cut(s) 263, 317, 418, 1070, 1080, 1391
HpyCH4III ACNGT 2 cut(s) 561, 643
HpyCH4V TGCA 5 cut(s) 594, 699, 833, 996, 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 591, 696, 1247
HpyF3I CTNAG 3 cut(s) 71, 465, 1423
Hsp92II CATG 6 cut(s) 223, 452, 686, 791, 939, 1355
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 541
LmnI GCTCC 2 cut(s) 64, 332
Lsp1109I GCAGC 9 cut(s) 24, 54, 578, 683, 785, 817, 845, 980, 1228
LweI GCATC 3 cut(s) 30, 737, 1237
MaeIII GTNAC 5 cut(s) 1026, 1074, 1089, 1111, 1451
MflI RGATCY 3 cut(s) 109, 399, 623
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 7 cut(s) 197, 472, 890, 997, 1225, 1360, 1365
MlyI GAGTC 2 cut(s) 82, 1400
MroNI GCCGGC 1 cut(s) 205
MseI TTAA 2 cut(s) 252, 1364
MslI CAYNNNNRTG 3 cut(s) 143, 1131, 1200
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
Mva1269I GAATGC 1 cut(s) 872
MvaI CCWGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 18, 591, 696, 1247
NaeI GCCGGC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 6 cut(s) 223, 452, 686, 791, 939, 1355
NlaIV GGNNCC 3 cut(s) 111, 328, 625
NmeAIII GCCGAG 1 cut(s) 343
NmuCI GTSAC 3 cut(s) 1089, 1111, 1451
NruI TCGCGA 1 cut(s) 165
NspV TTCGAA 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 1415
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 872
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 9 cut(s) 45, 94, 357, 652, 757, 1007, 1136, 1252, 1295
PfoI TCCNGGA 1 cut(s) 329
PleI GAGTC 2 cut(s) 81, 1400
PpsI GAGTC 2 cut(s) 81, 1400
Psp6I CCWGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
PspFI CCCAGC 1 cut(s) 634
PspGI CCWGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
PspN4I GGNNCC 3 cut(s) 111, 328, 625
PspPI GGNCC 1 cut(s) 366
PstI CTGCAG 4 cut(s) 596, 701, 835, 1089
PsuI RGATCY 3 cut(s) 109, 399, 623
RruI TCGCGA 1 cut(s) 165
RseI CAYNNNNRTG 3 cut(s) 143, 1131, 1200
SaqAI TTAA 2 cut(s) 252, 1364
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 2 cut(s) 82, 1400
ScrFI CCNGG 6 cut(s) 179, 331, 740, 869, 1041, 1275
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 3 cut(s) 30, 737, 1237
SfcI CTRYAG 4 cut(s) 592, 697, 831, 1085
Sfr274I CTCGAG 1 cut(s) 1415
SfuI TTCGAA 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 1415
SmiMI CAYNNNNRTG 3 cut(s) 143, 1131, 1200
SmlI CTYRAG 1 cut(s) 1415
SmoI CTYRAG 1 cut(s) 1415
Sse9I AATT 7 cut(s) 197, 472, 890, 997, 1225, 1360, 1365
SsiI CCGC 5 cut(s) 19, 508, 585, 690, 1244
StyD4I CCNGG 6 cut(s) 177, 329, 738, 867, 1039, 1273
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 561, 643
TaqI TCGA 5 cut(s) 120, 215, 819, 962, 1416
TasI AATT 7 cut(s) 197, 472, 890, 997, 1225, 1360, 1365
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 9 cut(s) 45, 94, 357, 652, 757, 1007, 1136, 1252, 1295
Tru1I TTAA 2 cut(s) 252, 1364
Tru9I TTAA 2 cut(s) 252, 1364
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 3 cut(s) 1089, 1111, 1451
TseI GCWGC 9 cut(s) 12, 67, 591, 696, 798, 830, 833, 993, 1241
Tsp45I GTSAC 3 cut(s) 1089, 1111, 1451
TspDTI ATGAA 8 cut(s) 687, 792, 840, 990, 1052, 1149, 1209, 1287
TspRI CASTG 1 cut(s) 564
XapI RAATTY 3 cut(s) 197, 890, 1225
XhoI CTCGAG 1 cut(s) 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.