Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002277

Physical Location & Seq

Genomic Coordinates Reverse (-)

55236098 .. 55239220

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTAACGCTCTTCTTAATTCCCATCTTTACAACTTTGGAAATACTGATTTTCAGATGACAAATTGGGATACTCAAATGAACATGAATAGAAAGATTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACCATAACAGTGTTTCTGGAGACATTTCTGATGTTCCTCTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCAGGTTATTCCAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCAGCCAATGTTGTTTGACAAGAGTATTAATTCAGCTACCCAATTTCAAGAAGATTTTCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATAGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCAAAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGGTCAGCAGTTTGCAGAACACTAAAAAGTTCATATCTTTAATTCCCAGTAGATATAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.34

Weight (kDa)

9.38

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21560 FvH4_7g21560 FvH4_7g21560 FvH4_7g21560
malus_domestica	MD01G1122500.v1.1 MD07G1192000.v1.1
prunus_persica	Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1 Prupe.2G230000_v2.0.a1
pyrus_communis	pycom01g14940 pycom07g18140
rosa_chinensis	RchiOBHm_Chr1g0365881
rosa_laevigata	RLG00000027383
rosa_multiflora	Rmu_sc0004288.1_g000017 Rmu_sc0006406.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290770
rosa_rugosa	Rorug01G0325000 Rorug01G0325100 Rorug01G0325200
rosa_samantha	Rh1AG334300 Rh1BG294900 Rh1CG311600 Rh1DG327300
rosa_wichuraiana	Rw1G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	236, 457
AgsI	TTSAA	4 cut(s)	311, 399, 420, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	299, 553
AluI	AGCT	2 cut(s)	299, 553
Alw26I	GTCTC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	236, 457
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	318, 415
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	64
BclI	TGATCA	2 cut(s)	178, 247
BcoDI	GTCTC	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	115, 431
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	642
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	178, 247
BspLI	GGNNCC	2 cut(s)	115, 431
BspMI	ACCTGC	1 cut(s)	209
BspQI	GCTCTTC	2 cut(s)	18, 579
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	178, 247
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	18, 579
BstDEI	CTNAG	1 cut(s)	554
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	181, 250
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	178, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 606
BstV1I	GCAGC	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	151, 567
BveI	ACCTGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	3 cut(s)	85, 109, 251
CviJI	RGCY	5 cut(s)	102, 268, 299, 546, 553
CviKI_1	RGCY	5 cut(s)	102, 268, 299, 546, 553
DdeI	CTNAG	1 cut(s)	554
DpnI	GATC	2 cut(s)	180, 249
DpnII	GATC	2 cut(s)	178, 247
Eam1104I	CTCTTC	2 cut(s)	18, 579
EarI	CTCTTC	2 cut(s)	18, 579
Eco130I	CCWWGG	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	3 cut(s)	88, 112, 254
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	84, 108, 250
FbaI	TGATCA	2 cut(s)	178, 247
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	349
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	88, 112, 254
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	551
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	4 cut(s)	57, 166, 204, 242
Hpy188III	TCNNGA	3 cut(s)	153, 176, 311
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	108, 338, 526, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 606
HpyF3I	CTNAG	1 cut(s)	554
Hsp92II	CATG	3 cut(s)	88, 112, 254
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	178, 247
Kzo9I	GATC	2 cut(s)	178, 247
LguI	GCTCTTC	2 cut(s)	18, 579
LpnPI	CCDG	5 cut(s)	138, 204, 308, 546, 661
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	503
MaeIII	GTNAC	4 cut(s)	5, 131, 211, 557
MalI	GATC	2 cut(s)	180, 249
MboI	GATC	2 cut(s)	178, 247
MboII	GAAGA	3 cut(s)	5, 326, 566
MfeI	CAATTG	1 cut(s)	399
MnlI	CCTC	3 cut(s)	183, 352, 531
MroXI	GAANNNNTTC	2 cut(s)	318, 415
MseI	TTAA	3 cut(s)	18, 291, 641
MslI	CAYNNNNRTG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	215, 606
NdeII	GATC	2 cut(s)	178, 247
NlaIII	CATG	3 cut(s)	88, 112, 254
NlaIV	GGNNCC	2 cut(s)	115, 431
NmuCI	GTSAC	2 cut(s)	131, 557
PciSI	GCTCTTC	2 cut(s)	18, 579
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	318, 415
PkrI	GCNGC	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	115, 431
PspPI	GGNCC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	18, 579
SaqAI	TTAA	3 cut(s)	18, 291, 641
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	178, 247
Sau96I	GGNCC	1 cut(s)	114
SetI	ASST	8 cut(s)	200, 223, 301, 327, 363, 390, 555, 606
SfaNI	GCATC	1 cut(s)	503
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	18, 291, 641
Tru9I	TTAA	3 cut(s)	18, 291, 641
TscAI	CASTG	2 cut(s)	151, 574
TseFI	GTSAC	2 cut(s)	131, 557
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	131, 557
TspDTI	ATGAA	4 cut(s)	95, 101, 438, 622
TspRI	CASTG	2 cut(s)	151, 574
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	2 cut(s)	236, 457
XmnI	GAANNNNTTC	2 cut(s)	318, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.