Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Forward (+)

1138749 .. 1143238

Gene Structure 4490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1018400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGGCCGGATTCTTGGTTCTGGTGGCGGTTGCGGTGGTGGTGGGTCTGTGCATTAATGGCGGTTGGGTGGCGGAGGCGGGTCGGGAGGCTCGGGGAAGGACGGGCAGGAGGGTCCACACGCTGTTCTCGGTGGAGTGCCAGAACTACTTCGACTGGCAGACTGTCGGGTTGATGCACAGCTACCGGAAGTCCCTGCAACCCGGCCCGATTACCCGACTCCTCAGCTGCACCGACCACGAGAAGAAGAAGTACCAAGGGATGCATCTGGCTCCCACTTTTGAGGTGCCTTCGATGAGCAGGCACCCAAAAACTGGTGACTGGTACCCTGCCATTAACAAACCAGCTGGAGTTGTGCACTGGCTTAAGCACAGTAAAGAGGCTGAGAATGTTGATTGGGTTGTGATTCTGGATGCTGACATGATTATCCGCGGCCCTATTGTTCCTTGGGAACTTGGTGCTGAGAAAGGCAAGCCTGTTGCAGCATTATATGGGTACTTGGTTGGGTGTGATAATCTTCTCGCTCAATTGCACACCAAGCACCCTGAACTCTGTGATAAAGTTGGTGGGCTTTTGGCCATGCATATAGATGATCTTCGGGCATTGGCACCCATGTGGCTTTTGAAAACAGAAGAAGTGCGGGAAGACAGAGCTCACTGGACAACTAATATAACTGGTGACATCTATGGGAAAGGATGGATCAGTGAGATGTATGGATATTCTTTTGGTGCAGCAGAGGTTGGTCTCCAGCACAAAATAAATGATAACTTGATGATCTACCCAGGCTATACTCCAGCTGAGGGTGTTGAGCCTATTCTTCTTCACTATGGCTTGCCATTTAGTGTAGGGAATTGGTCTTTTAGTAAATTAGATCACCATGAGGACGGTATTGTTTATGATTGTGGCCGACTTTTTCCTGAACCTCCTTATCCAAAAGAGGTAATAATGATGGAACTTGATCAATATAAAAGGCGGGCTCTTATGTTGAATTTAGAGTGCATTAACACTTTAAATGAGGGTCTTTTACTTCAACATGCAGCAGATGGTTGCCCAAAGCCAAAGTGGACCAAATACACGAGCTTTCTGAAAAGCAAAACTTTTGCTGAACTGACTCGGCCAAAAAAGCTGACTCCTGCTACTTTACGATTTGAGGAGCCAGTACATGTAGTACAGGCAGTGCAGCAGGAGGTTGTCGATGAACCCGGAAAACCATATCCAAAAATCCACACCCTTTTTTCCACTGAATGCACCGCTTACTTTGATTGGCAGACTGTAGGACTTGTCCACAGTTTTCACCTGAGTGGTCAGCCTGGAAATATCACACGATTACTCAGCTGTACAGATGAAGACTTGAAGCAATATGCTGGGCATGATCTGGCTCCCACCCATTATGTCCCTTCCATGAGCCGACATCCATTAACGGGTGATTGGTATCCAGCGATTAACAAACCAGCTGCAGTCCTTCATTGGCTCAATCATGCAAATACGGATGCAGAGTACATAGTGATTCTTGATGCTGATATGATCTTGAGAGGTCCAATTACACCATGGGAATTCAAAGCAGCACGTGGCCGACCAGTTTCAACTCCCTATGACTATCTTATCGGTTGTGATAATGAGCTTGCGAAACTCCATACTCGCCATCCTGAAGCCTGTGACAAGGTTGGGGGTGTTATCATCATGCATATAGATGATCTTAGAAAGTTTGCTCTACTGTGGTTGCATAAAACCGAGGAAGTCCGGGCAGACACAGCTCATTATGCCACAAATATCACTGGTGATATATATGCATCTGGTTGGATAAGTGAGATGTATGGTTACTCATTCGGGGCGGCAGAGTTGAAACTACGGCATCAAATAAGCAGCGAGATACTGATATACCCAGGGTATGCTCCTGAACCAGGCATCAAATACAGAGTATTCCACTACGGTTTGGAATTCAAGGTTGGAAACTGGAGCTTTGATAAAGCAAGCTGGAGGAATGTTGATGTGGTTAACAAGTGCTGGGCCCAGTTTCCCGACCCACCCGACCCTTCAACGCTCGACCAGACAGACAAGAACAAACTGCAGACAGATCTACTTAGCCTAGAATGCATTAAGACACTAAAGGAAGCATTACACCTGCATCACAATAGAAGGAACTGTCCCGATCCCAGTTCATTGTCCAACTCAAACTCACAAGCAGCGGAGGAAGTTGTAGTATCAAGGAAACTTGGTAAGTTGGATGGAAGTTTTGGTCTAGGAAGCAACCATGTCCAAACGAATCATTCCGAGGAGATTTCGGAACCTACATTGACAGATGGGATGTTTAGTTCTGTGAGGTTCTGGGTTGTTGCTCTATGGGCATTCTGTGGTTTGGGCTTCTTGACGGTCACGTCAATGCTGTTTTCAGGTCGTAAAGGGAAAGGTAAAAGAGGTAAAAGTCATAGAATTAAGAGGAGAAATTCTGGTACAGGATTTATGGATATTAGCAGCCGTGATAGGCATTTACGTGGAGGTGAAGTACCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

837

Amino Acids

94.04

Weight (kDa)

6.79

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	39 - 275	1.1e-18	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	408 - 676	2.1e-18	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2127
AasI	GACNNNNNNGTC	1 cut(s)	2371
Acc36I	ACCTGC	1 cut(s)	2127
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	4 cut(s)	283, 300, 321, 604
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	429
AclWI	GGATC	2 cut(s)	704, 2141
AcoI	YGGCCR	5 cut(s)	3, 573, 901, 1112, 1567
AcsI	RAATTY	4 cut(s)	985, 1550, 1934, 2440
AcuI	CTGAAG	1 cut(s)	1665
AcvI	CACGTG	1 cut(s)	1565
AfaI	GTAC	9 cut(s)	251, 323, 494, 1158, 1167, 1336, 1496, 2449, 2502
AfiI	CCNNNNNNNGG	4 cut(s)	311, 797, 1418, 1898
AflII	CTTAAG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	1159
AgsI	TTSAA	9 cut(s)	622, 985, 1028, 1351, 1555, 1581, 1840, 1939, 2034
AjiI	CACGTC	1 cut(s)	2373
AjnI	CCWGG	4 cut(s)	778, 1306, 1879, 1897
AjuI	GAANNNNNNNTTGG	2 cut(s)	1926, 1958
AleI	CACNNNNGTG	2 cut(s)	610, 1296
AloI	GAACNNNNNNTCC	3 cut(s)	32, 2293, 2325
Alw21I	GWGCWC	2 cut(s)	357, 652
Alw26I	GTCTC	1 cut(s)	746
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	704, 2141
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	8 cut(s)	3, 202, 430, 573, 901, 1112, 1567, 2004
ApaI	GGGCCC	1 cut(s)	2008
ApaLI	GTGCAC	1 cut(s)	353
ApoI	RAATTY	4 cut(s)	985, 1550, 1934, 2440
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	7 cut(s)	112, 203, 431, 1062, 1532, 2004, 2005
AsuC2I	CCSGG	3 cut(s)	201, 1200, 1739
AsuHPI	GGTGA	7 cut(s)	326, 686, 863, 1283, 1433, 1787, 2507
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	3 cut(s)	112, 1062, 1532
BaeGI	GKGCMC	2 cut(s)	357, 2008
BalI	TGGCCA	1 cut(s)	575
BanI	GGYRCC	4 cut(s)	283, 300, 321, 604
BanII	GRGCYC	3 cut(s)	652, 976, 2008
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BauI	CACGAG	2 cut(s)	236, 1072
BbrPI	CACGTG	1 cut(s)	1565
BbsI	GAAGAC	2 cut(s)	648, 1350
Bbv12I	GWGCWC	2 cut(s)	357, 652
BbvCI	CCTCAGC	2 cut(s)	221, 795
BccI	CCATC	6 cut(s)	687, 940, 1034, 1647, 2216, 2291
BceAI	ACGGC	2 cut(s)	1862, 2457
BciT130I	CCWGG	4 cut(s)	780, 1308, 1881, 1899
BciVI	GTATCC	1 cut(s)	1440
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	3 cut(s)	201, 1200, 1739
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	2 cut(s)	2084, 2237
BfmI	CTRYAG	3 cut(s)	1269, 1452, 2063
BfrI	CTTAAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	2127
BfuI	GTATCC	1 cut(s)	1440
BglII	AGATCT	1 cut(s)	2071
Bme1390I	CCNGG	7 cut(s)	201, 780, 1200, 1308, 1739, 1881, 1899
Bme18I	GGWCC	3 cut(s)	112, 1062, 1532
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	2373
BmgT120I	GGNCC	7 cut(s)	112, 203, 431, 1062, 1532, 2004, 2005
BmrFI	CCNGG	7 cut(s)	201, 780, 1200, 1308, 1739, 1881, 1899
BmrI	ACTGGG	2 cut(s)	2002, 2145
BmuI	ACTGGG	2 cut(s)	2002, 2145
BpiI	GAAGAC	2 cut(s)	648, 1350
BpmI	CTGGAG	5 cut(s)	366, 728, 774, 1972, 1993
Bpu10I	CCTNAGC	2 cut(s)	221, 795
BpuEI	CTTGAG	1 cut(s)	1546
BpuMI	CCSGG	3 cut(s)	201, 1200, 1739
BsaAI	YACGTR	2 cut(s)	1565, 2489
BsaBI	GATNNNNATC	1 cut(s)	1428
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	9 cut(s)	253, 427, 443, 778, 1544, 1728, 1879, 1880, 2268
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	2484
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 797, 1418, 1898
Bse8I	GATNNNNATC	1 cut(s)	1428
BseBI	CCWGG	4 cut(s)	780, 1308, 1881, 1899
BseDI	CCNNGG	9 cut(s)	253, 427, 443, 778, 1544, 1728, 1879, 1880, 2268
BseGI	GGATG	8 cut(s)	264, 415, 698, 1408, 1492, 1639, 2227, 2307
BseJI	GATNNNNATC	1 cut(s)	1428
BseLI	CCNNNNNNNGG	4 cut(s)	311, 797, 1418, 1898
BseMII	CTCAG	6 cut(s)	235, 372, 450, 786, 1286, 1342
BseRI	GAGGAG	4 cut(s)	209, 1163, 2285, 2449
BseSI	GKGCMC	2 cut(s)	357, 2008
BseYI	CCCAGC	2 cut(s)	1361, 2001
BsgI	GTGCAG	3 cut(s)	211, 747, 1196
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	8 cut(s)	5, 204, 432, 575, 903, 1114, 1569, 2006
BshNI	GGYRCC	4 cut(s)	283, 300, 321, 604
BsiHKAI	GWGCWC	2 cut(s)	357, 652
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	5 cut(s)	6, 184, 201, 1200, 1738
BslFI	GGGAC	3 cut(s)	175, 1376, 2127
BslI	CCNNNNNNNGG	4 cut(s)	311, 797, 1418, 1898
BsmAI	GTCTC	1 cut(s)	746
BsmFI	GGGAC	3 cut(s)	175, 1376, 2127
BsmI	GAATGC	3 cut(s)	1247, 2093, 2342
BsnI	GGCC	8 cut(s)	5, 204, 432, 575, 903, 1114, 1569, 2006
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	90
Bsp120I	GGGCCC	1 cut(s)	2004
Bsp1286I	GDGCHC	4 cut(s)	357, 652, 976, 2008
Bsp1407I	TGTACA	1 cut(s)	1334
Bsp19I	CCATGG	1 cut(s)	1544
BspANI	GGCC	8 cut(s)	5, 204, 432, 575, 903, 1114, 1569, 2006
BspCNI	CTCAG	6 cut(s)	234, 373, 451, 787, 1287, 1341
BspFNI	CGCG	1 cut(s)	429
BspMAI	CTGCAG	2 cut(s)	1456, 2067
BspMI	ACCTGC	1 cut(s)	2127
BspPI	GGATC	2 cut(s)	704, 2141
BspT107I	GGYRCC	4 cut(s)	283, 300, 321, 604
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	1334
BssECI	CCNNGG	9 cut(s)	253, 427, 443, 778, 1544, 1728, 1879, 1880, 2268
BssSI	CACGAG	2 cut(s)	236, 1072
BssT1I	CCWWGG	3 cut(s)	253, 443, 1544
Bst2BI	CACGAG	2 cut(s)	236, 1072
Bst2UI	CCWGG	4 cut(s)	780, 1308, 1881, 1899
Bst4CI	ACNGT	9 cut(s)	163, 371, 884, 1270, 1286, 1713, 1928, 2141, 2368
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	1334
BstBAI	YACGTR	2 cut(s)	1565, 2489
BstC8I	GCNNGC	6 cut(s)	299, 470, 830, 972, 1620, 1969
BstDEI	CTNAG	8 cut(s)	221, 381, 459, 795, 1295, 1328, 1694, 2078
BstDSI	CCRYGG	2 cut(s)	427, 1544
BstENI	CCTNNNNNAGG	1 cut(s)	1896
BstF5I	GGATG	8 cut(s)	264, 415, 698, 1408, 1492, 1639, 2227, 2307
BstFNI	CGCG	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	746
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 535, 1120, 1748, 1757, 2088, 2339
BstNI	CCWGG	4 cut(s)	780, 1308, 1881, 1899
BstNSI	RCATGY	2 cut(s)	1034, 1163
BstSCI	CCNGG	7 cut(s)	199, 778, 1198, 1306, 1737, 1879, 1897
BstSFI	CTRYAG	3 cut(s)	1269, 1452, 2063
BstSLI	GKGCMC	2 cut(s)	357, 2008
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	2 cut(s)	648, 1350
BstX2I	RGATCY	1 cut(s)	2071
BstYI	RGATCY	1 cut(s)	2071
BsuI	GTATCC	1 cut(s)	1440
BsuRI	GGCC	8 cut(s)	5, 204, 432, 575, 903, 1114, 1569, 2006
BtgI	CCRYGG	2 cut(s)	427, 1544
BtrI	CACGTC	1 cut(s)	2373
BtsCI	GGATG	8 cut(s)	264, 415, 698, 1408, 1492, 1639, 2227, 2307
BtsI	GCAGTG	1 cut(s)	1179
BtsIMutI	CAGTG	6 cut(s)	355, 652, 706, 1179, 1236, 1770
BveI	ACCTGC	1 cut(s)	2127
Cac8I	GCNNGC	6 cut(s)	299, 470, 830, 972, 1620, 1969
Cfr13I	GGNCC	7 cut(s)	112, 203, 431, 1062, 1532, 2004, 2005
Cfr42I	CCGCGG	1 cut(s)	430
Csp6I	GTAC	9 cut(s)	250, 322, 493, 1157, 1166, 1335, 1495, 2448, 2501
CviQI	GTAC	9 cut(s)	250, 322, 493, 1157, 1166, 1335, 1495, 2448, 2501
DdeI	CTNAG	8 cut(s)	221, 381, 459, 795, 1295, 1328, 1694, 2078
DraI	TTTAAA	1 cut(s)	1008
DrdI	GACNNNNNNGTC	1 cut(s)	2371
DseDI	GACNNNNNNGTC	1 cut(s)	2371
EaeI	YGGCCR	5 cut(s)	3, 573, 901, 1112, 1567
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	650
Eco130I	CCWWGG	3 cut(s)	253, 443, 1544
Eco24I	GRGCYC	3 cut(s)	652, 976, 2008
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	3 cut(s)	112, 1062, 1532
Eco53kI	GAGCTC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	1665
Eco72I	CACGTG	1 cut(s)	1565
Eco88I	CYCGRG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	1896
EcoRI	GAATTC	2 cut(s)	1550, 1934
EcoRII	CCWGG	4 cut(s)	778, 1306, 1879, 1897
EcoT14I	CCWWGG	3 cut(s)	253, 443, 1544
EcoT22I	ATGCAT	5 cut(s)	264, 582, 1683, 1789, 2093
EcoT38I	GRGCYC	3 cut(s)	652, 976, 2008
ErhI	CCWWGG	3 cut(s)	253, 443, 1544
FalI	AAGNNNNNCTT	2 cut(s)	1078, 1110
FaqI	GGGAC	3 cut(s)	175, 1376, 2127
FauI	CCCGC	3 cut(s)	70, 630, 963
FbaI	TGATCA	1 cut(s)	955
FokI	GGATG	8 cut(s)	271, 422, 705, 1395, 1499, 1626, 2234, 2314
FriOI	GRGCYC	3 cut(s)	652, 976, 2008
FspBI	CTAG	2 cut(s)	2084, 2237
GsaI	CCCAGC	2 cut(s)	1365, 2005
GsuI	CTGGAG	5 cut(s)	366, 728, 774, 1972, 1993
HaeIII	GGCC	8 cut(s)	5, 204, 432, 575, 903, 1114, 1569, 2006
HapII	CCGG	5 cut(s)	6, 184, 201, 1200, 1738
HincII	GTYRAC	1 cut(s)	1993
HindII	GTYRAC	1 cut(s)	1993
HinfI	GANTC	7 cut(s)	9, 216, 403, 1108, 1126, 1504, 2260
HpaI	GTTAAC	1 cut(s)	1993
HpaII	CCGG	5 cut(s)	6, 184, 201, 1200, 1738
HphI	GGTGA	7 cut(s)	326, 686, 863, 1283, 1433, 1787, 2507
Hpy166II	GTNNAC	5 cut(s)	115, 355, 1062, 1282, 1993
Hpy188I	TCNGA	3 cut(s)	1083, 2269, 2281
Hpy8I	GTNNAC	5 cut(s)	115, 355, 1062, 1282, 1993
HpyAV	CCTTC	6 cut(s)	90, 297, 1404, 1469, 2040, 2127
HpyCH4III	ACNGT	9 cut(s)	163, 371, 884, 1270, 1286, 1713, 1928, 2141, 2368
HpyCH4IV	ACGT	3 cut(s)	1564, 2372, 2488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 535, 1120, 1748, 1757, 2088, 2339
HpyF3I	CTNAG	8 cut(s)	221, 381, 459, 795, 1295, 1328, 1694, 2078
HpySE526I	ACGT	3 cut(s)	1564, 2372, 2488
KpnI	GGTACC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	955
KspAI	GTTAAC	1 cut(s)	1993
KspI	CCGCGG	1 cut(s)	430
LmnI	GCTCC	5 cut(s)	274, 1150, 1381, 1894, 1953
MaeI	CTAG	2 cut(s)	2084, 2237
MaeII	ACGT	3 cut(s)	1564, 2372, 2488
MaeIII	GTNAC	5 cut(s)	314, 674, 1652, 1814, 2368
MboII	GAAGA	9 cut(s)	253, 256, 506, 584, 641, 653, 806, 809, 1355
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	2071
MhlI	GDGCHC	4 cut(s)	357, 652, 976, 2008
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	9 cut(s)	524, 847, 863, 985, 1536, 1550, 1934, 2427, 2440
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	210, 1102, 1120
MmeI	TCCRAC	4 cut(s)	1775, 1924, 2187, 2199
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	5 cut(s)	264, 582, 1683, 1789, 2093
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	575
MslI	CAYNNNNRTG	6 cut(s)	585, 610, 1296, 1686, 2375, 2487
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	7 cut(s)	225, 344, 429, 794, 1332, 1451, 2183
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	5 cut(s)	6, 184, 201, 1200, 1738
MspR9I	CCNGG	7 cut(s)	201, 780, 1200, 1308, 1739, 1881, 1899
MunI	CAATTG	1 cut(s)	524
Mva1269I	GAATGC	3 cut(s)	1247, 2093, 2342
MvaI	CCWGG	4 cut(s)	780, 1308, 1881, 1899
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	7 cut(s)	57, 535, 1120, 1748, 1757, 2088, 2339
NciI	CCSGG	3 cut(s)	201, 1200, 1739
NcoI	CCATGG	1 cut(s)	1544
NmeAIII	GCCGAG	1 cut(s)	1090
NmuCI	GTSAC	4 cut(s)	314, 674, 1652, 2368
NsiI	ATGCAT	5 cut(s)	264, 582, 1683, 1789, 2093
NspI	RCATGY	2 cut(s)	1034, 1163
OliI	CACNNNNGTG	2 cut(s)	610, 1296
PaqCI	CACCTGC	1 cut(s)	2127
PasI	CCCWGGG	1 cut(s)	1880
PciI	ACATGT	1 cut(s)	1159
PctI	GAATGC	3 cut(s)	1247, 2093, 2342
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	4 cut(s)	9, 403, 1504, 2260
PflMI	CCANNNNNTGG	1 cut(s)	311
PleI	GAGTC	3 cut(s)	210, 1102, 1120
PmaCI	CACGTG	1 cut(s)	1565
PmlI	CACGTG	1 cut(s)	1565
PpsI	GAGTC	3 cut(s)	210, 1102, 1120
Ppu21I	YACGTR	2 cut(s)	1565, 2489
PscI	ACATGT	1 cut(s)	1159
PshBI	ATTAAT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	652
Psp6I	CCWGG	4 cut(s)	778, 1306, 1879, 1897
PspCI	CACGTG	1 cut(s)	1565
PspFI	CCCAGC	2 cut(s)	1361, 2001
PspGI	CCWGG	4 cut(s)	778, 1306, 1879, 1897
PspOMI	GGGCCC	1 cut(s)	2004
PspPI	GGNCC	7 cut(s)	112, 203, 431, 1062, 1532, 2004, 2005
PstI	CTGCAG	2 cut(s)	1456, 2067
PsuI	RGATCY	1 cut(s)	2071
PvuII	CAGCTG	5 cut(s)	225, 344, 794, 1332, 1451
RsaI	GTAC	9 cut(s)	251, 323, 494, 1158, 1167, 1336, 1496, 2449, 2502
RsaNI	GTAC	9 cut(s)	250, 322, 493, 1157, 1166, 1335, 1495, 2448, 2501
RseI	CAYNNNNRTG	6 cut(s)	585, 610, 1296, 1686, 2375, 2487
SacI	GAGCTC	1 cut(s)	652
SacII	CCGCGG	1 cut(s)	430
Sau96I	GGNCC	7 cut(s)	112, 203, 431, 1062, 1532, 2004, 2005
SchI	GAGTC	3 cut(s)	210, 1102, 1120
ScrFI	CCNGG	7 cut(s)	201, 780, 1200, 1308, 1739, 1881, 1899
SduI	GDGCHC	4 cut(s)	357, 652, 976, 2008
SfcI	CTRYAG	3 cut(s)	1269, 1452, 2063
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SinI	GGWCC	3 cut(s)	112, 1062, 1532
SmiMI	CAYNNNNRTG	6 cut(s)	585, 610, 1296, 1686, 2375, 2487
SmlI	CTYRAG	2 cut(s)	362, 1525
SmoI	CTYRAG	2 cut(s)	362, 1525
Sse9I	AATT	9 cut(s)	524, 847, 863, 985, 1536, 1550, 1934, 2427, 2440
SspMI	CTAG	2 cut(s)	2084, 2237
SstI	GAGCTC	1 cut(s)	652
StyD4I	CCNGG	7 cut(s)	199, 778, 1198, 1306, 1737, 1879, 1897
StyI	CCWWGG	3 cut(s)	253, 443, 1544
TaaI	ACNGT	9 cut(s)	163, 371, 884, 1270, 1286, 1713, 1928, 2141, 2368
TaiI	ACGT	3 cut(s)	1567, 2375, 2491
TaqI	TCGA	4 cut(s)	150, 290, 1191, 2040
TasI	AATT	9 cut(s)	524, 847, 863, 985, 1536, 1550, 1934, 2427, 2440
TatI	WGTACW	4 cut(s)	1156, 1165, 1334, 1494
TauI	GCSGC	2 cut(s)	432, 1832
TfiI	GAWTC	4 cut(s)	9, 403, 1504, 2260
TscAI	CASTG	6 cut(s)	362, 659, 706, 1179, 1243, 1777
TseFI	GTSAC	4 cut(s)	314, 674, 1652, 2368
Tsp45I	GTSAC	4 cut(s)	314, 674, 1652, 2368
TspDTI	ATGAA	5 cut(s)	1209, 1356, 1451, 2145, 2496
TspGWI	ACGGA	1 cut(s)	1499
TspRI	CASTG	6 cut(s)	362, 659, 706, 1179, 1243, 1777
Van91I	CCANNNNNTGG	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	112, 1062, 1532
VspI	ATTAAT	1 cut(s)	54
XagI	CCTNNNNNAGG	1 cut(s)	1896
XapI	RAATTY	4 cut(s)	985, 1550, 1934, 2440
XceI	RCATGY	2 cut(s)	1034, 1163
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1056, 1542
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	2 cut(s)	2084, 2237
Zsp2I	ATGCAT	5 cut(s)	264, 582, 1683, 1789, 2093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.