Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Forward (+)

1795199 .. 1796263

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAATTGAGATCTCTGAGGTATTTAGTTGAATGCAATAACATTCTGCCTCAATTGCATACAAAGCATCCAGAACTTTGTGATAGATTTGGTGGGCTCTTTGCAATGCATATAGATGATCTTCGAGCATTGGCACCTATGTGGCTTTCGAAAGCAGAAGAAGTGCGAGAAGATAGAGCTCACTGGGGAACTAATATAACTGGTGACATTTATGGAAGCGGATGGATCAGTTGTGACACTTTTGGTGCAGCAGAGGTTGGTCTTCCGCACAAAATAAATGATAACTTGATGATCTATCCAAGATATATTCCACAAGAGGGTGTTGTGCCTATTCTTCTTGACTATGGCTTGCCATTTAGCGTCGGAAATTGGTCCTTTAGTAAATTCGATAACCGTCAAGATGGTATTGTTTATGACTGTGGCGGTCGCTTTCCTGAAGATCCTTATCCAAAAGAGGTTTGTGTTCCGAGTCCAATAGACAAGCACCCTTTAGATAGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

5.27

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	3 cut(s)	219, 266, 423
AclWI	GGATC	2 cut(s)	233, 434
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	32
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	233, 434
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	99, 181
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	216, 395
BfaI	CTAG	1 cut(s)	502
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	188, 205
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	444
BseGI	GGATG	2 cut(s)	67, 227
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	188, 205
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	99, 181
Bsp143I	GATC	5 cut(s)	11, 118, 225, 291, 439
BspACI	CCGC	3 cut(s)	219, 266, 423
BspCNI	CTCAG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	233, 434
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	188, 205
BssMI	GATC	5 cut(s)	11, 118, 225, 291, 439
Bst4CI	ACNGT	2 cut(s)	395, 419
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	67, 227
BstKTI	GATC	5 cut(s)	14, 121, 228, 294, 442
BstMBI	GATC	5 cut(s)	11, 118, 225, 291, 439
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 64
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	11, 439
BstYI	RGATCY	2 cut(s)	11, 439
BtsCI	GGATG	2 cut(s)	67, 227
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	1 cut(s)	349
CviJI	RGCY	5 cut(s)	97, 145, 179, 348, 498
CviKI_1	RGCY	5 cut(s)	97, 145, 179, 348, 498
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	5 cut(s)	13, 120, 227, 293, 441
DpnII	GATC	5 cut(s)	11, 118, 225, 291, 439
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	99, 181
Eco47I	GGWCC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	99, 181
FaiI	YATR	9 cut(s)	60, 111, 113, 140, 197, 213, 306, 345, 414
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	54, 234
FriOI	GRGCYC	2 cut(s)	99, 181
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	502
GluI	GCNGC	1 cut(s)	249
HgaI	GACGC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	469
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	18, 365, 468
Hpy188III	TCNNGA	4 cut(s)	71, 338, 398, 434
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	395, 419
HpyCH4V	TGCA	5 cut(s)	36, 58, 104, 109, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 64
HpyF3I	CTNAG	1 cut(s)	17
Kzo9I	GATC	5 cut(s)	11, 118, 225, 291, 439
LpnPI	CCDG	4 cut(s)	84, 169, 186, 447
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	203, 233
MalI	GATC	5 cut(s)	13, 120, 227, 293, 441
MboI	GATC	5 cut(s)	11, 118, 225, 291, 439
MboII	GAAGA	6 cut(s)	113, 170, 182, 254, 326, 449
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	2 cut(s)	11, 439
MhlI	GDGCHC	2 cut(s)	99, 181
MluCI	AATT	4 cut(s)	5, 53, 367, 383
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	12, 60, 247, 310, 448
Mph1103I	ATGCAT	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	114, 139
MunI	CAATTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	55, 64
NdeII	GATC	5 cut(s)	11, 118, 225, 291, 439
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	203, 233
NsiI	ATGCAT	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	139
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	11, 439
RseI	CAYNNNNRTG	2 cut(s)	114, 139
SacI	GAGCTC	1 cut(s)	181
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	5 cut(s)	11, 118, 225, 291, 439
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	99, 181
SetI	ASST	5 cut(s)	23, 139, 181, 258, 459
SfaNI	GCATC	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	114, 139
Sse9I	AATT	4 cut(s)	5, 53, 367, 383
SsiI	CCGC	3 cut(s)	219, 266, 423
SspMI	CTAG	1 cut(s)	502
SstI	GAGCTC	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	395, 419
TaqI	TCGA	3 cut(s)	124, 149, 387
TasI	AATT	4 cut(s)	5, 53, 367, 383
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	2 cut(s)	203, 233
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	203, 233
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.