Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Reverse (-)

80235849 .. 80241535

Gene Structure 5687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG629100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGATGGGTGGTGACTTGTTATCATTGGTGCTTCTGGTGCTTCTGGGTTTGTGTGTTAATGGCGAGCCGGGTATGCCACCGGGTCGGAGGGTCCATACTCTGTTCTCGGTGGAGTGTCAGGACTACTTCGACTGGCAGACTGTGGGCCTGATGCACAGCTTCAGGAAGGCCCGGCAACCCGGCCCGATTACCCGACTGCTCAGCTGCACCGACGAGGAGAAGAAGAAGTACAGAGGGATGCATTTGGCTCCAACTTTTGAGGTGCCTTCTATGAGTAGGCACCCAAAGACTGGTGACTGGTACCCTGCCATTAACAAACCTGCTGGAGTTGTGCACTGGCTTAAGCATAGTAAAGAAGCTAAGAATGTTGATTGGGTTGTGATACTGGATGCAGACATGATCATACGGGGGCCGATTGTTCCTTGGGAACTTGGTGCCGAGAAAGGCTATGCTGTGGCAGCATATTATGGGTATTTGATTGGATGCAATAATATTCTGGCTCAATTGCATACAAAGCACCCAGAATTTTGTGATAAAGTTGGTGGGCTCTTAGCAATGCATATAGATGATCTTCGAGCATTGGCACCTATGTGGCTTTCGAAAACAGAAGAAGTGCGAGAAGATAGAGCTCACTGGGGAACTAATATAACTGGTGACATTTATTCAAGCGGATGGATCAGTGAGATGTATGGATACTCTTTTGGTGCAGCAGAGGTTGGTCTTCGGCACAAAATAAATGATAACTTGATGATCTATCCAGGATATATTCCACAAGAGGGTGTTGTGCCTATTCTTCTTCACTATGGCTTGCCATTTAGTGTGGGAAATTGGTCCTTTAGTAAATTAGATCACCATGAAGATGGTATTGTTTATGACTGCGGCCGTCTCTTTCCTGAACCTCCTTATCCAAAAGAGGTTAAACTGATGGAGCCAGATGCACATAAAAGGCGAGGTCTCTTTTTGAATCTAGAGTGCATTAACACTTTGAATGAGGGACTTTTACTTCAACATGCAGCAAATCGTTGCCCTAAGCCAAAGTGGTCAAAATACATGAGCTTTCTGAAAAGCAAAACTTTTGCTGAGCTGACTCGACCAAAACAGCTGACTGCTGCCACTTTAGGAATTGAGGAGAAGGTACAGGCTGTACAGCAGCAGGTTGTAGATGAACCTGTGAAGCCATATCCAAAAATCCACACTTTATTTTCCACAGAATGCACCCCTTACTTCGATTGGCAGACTGTTGGACTTGTCCACAGTTTTCACCTCAGTGGACAGCCTGGAAATATCACGCGATTACTCAGCTGTACTGATGAAGACCTGAAGCAATATACTGGCCATGATCTGGCCCCAACACATTATGTTCCTTCCATGAGCCGACATCCATTAACGGGCGATTGGTATCCGGCAATTAACAAACCAGCTGCAGTCCTTCATTGGCTGAATCATGTAGATACTGACGCAGAGTACATAGTGATTCTTGATGCTGATATGATTATGAGAGGCCCAATTACACCATGGGAATTCAAAGCAGCACGTGGCCAACCAGTTTCAACTCCCTATGACTATCTTATTGGCTGTGACAATGTACTCGCAAAGCTTCATACGAGCCATCCGGAAGCCTGTGACAAGGTTGGGGGTGTAATCATCATGCATATAGATGATCTTCGTCAATTTGCTTTACTATGGTTGCATAAAACCGAGGAAGTCCGGGCAGACAGAGCTCATTATGCCACAAATATTACTGGAGATATATATTCATCTGGTTGGATAAGTGAGATGTATGGTTACTCATTTGGTGCGGCAGAGTTGAAACTAAGGCATCGCATAAGCAGTGAGATACTGATATACCCAGGATATACTCCTTCACCCGGTATAAAATATAGAGTTTTCCACTACGGTTTGGAATTCAAAGTTGGAAACTGGAGTTTTGACAAGGCAAATTGGAGGAATACTGACGTGGTCAATAGGTGCTGGGCTCAGTTTCCAGACCCACCAGACCCTTCAACACTTGACCAGACAGACAATAACATACTGCAGAGGGATCTTCTTAGCATAGAATGCATCAAGACACTAAATGAAGCATTACGGCTGCATCATGTGAGGCGGAAGTGTCCTGATCCTAATTCCCTGTCCAACTCAAACTCAGATGCAGCAGACGAAGTTGTCATATCGAGGAAATTTGGCAAGATGAATGTAACTTCTGTTCTAGAAGACAACCATGAGCAAAAGAATCAGTCTCGGGAACTTTCAGAACCTACCGAGACAGATGGGATGTTTAGTTCTGTCAGGTTCTGGGTTATTGCTTTCTGGGCATTCTGTGGCTTGGGCTTCTTGACAGTCGCGTCAGTGTTGTTTTCTGGTCGGAAAGGGAAAGGCAAAAGAGGTAAAAGTTATAGAGTTAAGAGACGAAATTCGGGTTCAGGATTCATGGATATTAGTGGACGTGATAGGCATTCACAAGTACCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

823

Amino Acids

93.18

Weight (kDa)

6.94

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	32 - 256	3.3e-18	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	399 - 666	6.5e-19	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2162, 2341
Acc36I	ACCTGC	2 cut(s)	328, 1144
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	5 cut(s)	262, 279, 300, 434, 583
AccB7I	CCANNNNNTGG	2 cut(s)	290, 1342
AccII	CGCG	2 cut(s)	1291, 2342
AccIII	TCCGGA	1 cut(s)	1612
AciI	CCGC	4 cut(s)	669, 879, 1799, 2104
AclWI	GGATC	3 cut(s)	683, 2049, 2111
AcoI	YGGCCR	3 cut(s)	880, 1333, 1537
AcsI	RAATTY	5 cut(s)	524, 1520, 1904, 2177, 2410
AcuI	CTGAAG	2 cut(s)	145, 1340
AcvI	CACGTG	1 cut(s)	1535
AfaI	GTAC	8 cut(s)	230, 302, 1137, 1146, 1306, 1466, 1587, 2463
AfiI	CCNNNNNNNGG	5 cut(s)	290, 776, 1342, 1388, 1868
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	9 cut(s)	666, 964, 988, 1007, 1525, 1551, 1810, 1909, 2004
AjiI	CACGTC	2 cut(s)	1957, 2444
AjnI	CCWGG	3 cut(s)	757, 1276, 1849
AjuI	GAANNNNNNNTTGG	2 cut(s)	1896, 1928
AleI	CACNNNNGTG	2 cut(s)	589, 1266
AloI	GAACNNNNNNTCC	2 cut(s)	2263, 2295
Alw21I	GWGCWC	3 cut(s)	336, 631, 1723
Alw26I	GTCTC	5 cut(s)	890, 959, 2241, 2255, 2398
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	683, 2049, 2111
AlwNI	CAGNNNCTG	1 cut(s)	2292
Ama87I	CYCGRG	1 cut(s)	2238
Aor13HI	TCCGGA	1 cut(s)	1612
AoxI	GGCC	9 cut(s)	145, 168, 181, 410, 880, 1333, 1344, 1501, 1537
ApaLI	GTGCAC	1 cut(s)	332
ApoI	RAATTY	5 cut(s)	524, 1520, 1904, 2177, 2410
Asp718I	GGTACC	1 cut(s)	300
AspS9I	GGNCC	8 cut(s)	91, 145, 169, 182, 410, 831, 1345, 1502
AsuC2I	CCSGG	6 cut(s)	69, 81, 172, 180, 1709, 1869
AsuHPI	GGTGA	6 cut(s)	23, 305, 665, 842, 1253, 1857
AsuII	TTCGAA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	2238
AvaII	GGWCC	2 cut(s)	91, 831
BaeGI	GKGCMC	1 cut(s)	336
BalI	TGGCCA	2 cut(s)	1335, 1539
BanI	GGYRCC	5 cut(s)	262, 279, 300, 434, 583
BanII	GRGCYC	4 cut(s)	549, 631, 1723, 1978
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbrPI	CACGTG	1 cut(s)	1535
BbsI	GAAGAC	3 cut(s)	713, 1320, 2217
Bbv12I	GWGCWC	3 cut(s)	336, 631, 1723
BccI	CCATC	5 cut(s)	666, 854, 919, 1617, 2261
BceAI	ACGGC	2 cut(s)	867, 2102
BciT130I	CCWGG	3 cut(s)	759, 1278, 1851
BciVI	GTATCC	2 cut(s)	686, 1410
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	6 cut(s)	69, 81, 172, 180, 1709, 1869
BcoDI	GTCTC	5 cut(s)	890, 959, 2241, 2255, 2398
BfaI	CTAG	2 cut(s)	968, 2207
BfmI	CTRYAG	2 cut(s)	1422, 2033
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	2 cut(s)	328, 1144
BfuI	GTATCC	2 cut(s)	686, 1410
BlpI	GCTNAGC	2 cut(s)	200, 1080
Bme1390I	CCNGG	9 cut(s)	69, 81, 172, 180, 759, 1278, 1709, 1851, 1869
Bme18I	GGWCC	2 cut(s)	91, 831
BmeT110I	CYCGRG	1 cut(s)	2238
BmgBI	CACGTC	2 cut(s)	1957, 2444
BmgT120I	GGNCC	8 cut(s)	91, 145, 169, 182, 410, 831, 1345, 1502
BmrFI	CCNGG	9 cut(s)	69, 81, 172, 180, 759, 1278, 1709, 1851, 1869
BmrI	ACTGGG	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	3 cut(s)	713, 1320, 2217
BpmI	CTGGAG	3 cut(s)	345, 1764, 1942
Bpu10I	CCTNAGC	1 cut(s)	1029
Bpu1102I	GCTNAGC	2 cut(s)	200, 1080
Bpu14I	TTCGAA	1 cut(s)	599
BpuMI	CCSGG	6 cut(s)	69, 81, 172, 180, 1709, 1869
BsaAI	YACGTR	1 cut(s)	1535
BsaBI	GATNNNNATC	1 cut(s)	1398
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	4 cut(s)	422, 1514, 1698, 1849
BsaWI	WCCGGW	1 cut(s)	1612
Bsc4I	CCNNNNNNNGG	5 cut(s)	290, 776, 1342, 1388, 1868
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	1398
BseAI	TCCGGA	1 cut(s)	1612
BseBI	CCWGG	3 cut(s)	759, 1278, 1851
BseDI	CCNNGG	4 cut(s)	422, 1514, 1698, 1849
BseGI	GGATG	7 cut(s)	243, 394, 488, 677, 1378, 1609, 2277
BseJI	GATNNNNATC	1 cut(s)	1398
BseLI	CCNNNNNNNGG	5 cut(s)	290, 776, 1342, 1388, 1868
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	6 cut(s)	214, 1071, 1279, 1312, 1991, 2157
BseRI	GAGGAG	2 cut(s)	230, 1142
BseSI	GKGCMC	1 cut(s)	336
BseX3I	CGGCCG	1 cut(s)	880
BseYI	CCCAGC	1 cut(s)	1971
BsgI	GTGCAG	2 cut(s)	190, 726
Bsh1236I	CGCG	2 cut(s)	1291, 2342
Bsh1285I	CGRYCG	1 cut(s)	883
BshFI	GGCC	9 cut(s)	147, 170, 183, 412, 882, 1335, 1346, 1503, 1539
BshNI	GGYRCC	5 cut(s)	262, 279, 300, 434, 583
BsiEI	CGRYCG	1 cut(s)	883
BsiHKAI	GWGCWC	3 cut(s)	336, 631, 1723
BsiHKCI	CYCGRG	1 cut(s)	2238
BsiSI	CCGG	8 cut(s)	68, 80, 172, 180, 1403, 1613, 1708, 1869
BslFI	GGGAC	1 cut(s)	1008
BslI	CCNNNNNNNGG	5 cut(s)	290, 776, 1342, 1388, 1868
BsmAI	GTCTC	5 cut(s)	890, 959, 2241, 2255, 2398
BsmBI	CGTCTC	2 cut(s)	890, 2398
BsmFI	GGGAC	1 cut(s)	1008
BsmI	GAATGC	4 cut(s)	1217, 2063, 2312, 2452
BsnI	GGCC	9 cut(s)	147, 170, 183, 412, 882, 1335, 1346, 1503, 1539
Bso31I	GGTCTC	1 cut(s)	959
BsoBI	CYCGRG	1 cut(s)	2238
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	5 cut(s)	336, 549, 631, 1723, 1978
Bsp13I	TCCGGA	1 cut(s)	1612
Bsp1407I	TGTACA	1 cut(s)	1144
Bsp143I	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
Bsp1720I	GCTNAGC	2 cut(s)	200, 1080
Bsp19I	CCATGG	1 cut(s)	1514
BspACI	CCGC	4 cut(s)	669, 879, 1799, 2104
BspANI	GGCC	9 cut(s)	147, 170, 183, 412, 882, 1335, 1346, 1503, 1539
BspCNI	CTCAG	6 cut(s)	213, 1072, 1278, 1311, 1990, 2156
BspEI	TCCGGA	1 cut(s)	1612
BspFNI	CGCG	2 cut(s)	1291, 2342
BspMAI	CTGCAG	2 cut(s)	1426, 2037
BspMI	ACCTGC	2 cut(s)	328, 1144
BspPI	GGATC	3 cut(s)	683, 2049, 2111
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	5 cut(s)	262, 279, 300, 434, 583
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	1144
BssECI	CCNNGG	4 cut(s)	422, 1514, 1698, 1849
BssMI	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
BssT1I	CCWWGG	2 cut(s)	422, 1514
Bst2UI	CCWGG	3 cut(s)	759, 1278, 1851
Bst4CI	ACNGT	5 cut(s)	142, 1240, 1256, 1898, 2338
BstAFI	CTTAAG	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	2058
BstAUI	TGTACA	1 cut(s)	1144
BstBAI	YACGTR	1 cut(s)	1535
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	65, 809
BstDSI	CCRYGG	1 cut(s)	1514
BstF5I	GGATG	7 cut(s)	243, 394, 488, 677, 1378, 1609, 2277
BstFNI	CGCG	2 cut(s)	1291, 2342
BstKTI	GATC	9 cut(s)	402, 571, 678, 753, 850, 1342, 1663, 2044, 2119
BstMAI	GTCTC	5 cut(s)	890, 959, 2241, 2255, 2398
BstMBI	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
BstMCI	CGRYCG	1 cut(s)	883
BstMWI	GCNNNNNNNGC	8 cut(s)	37, 73, 458, 514, 1718, 1727, 2058, 2309
BstNI	CCWGG	3 cut(s)	759, 1278, 1851
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	9 cut(s)	67, 79, 170, 178, 757, 1276, 1707, 1849, 1867
BstSFI	CTRYAG	2 cut(s)	1422, 2033
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	1291, 2342
BstV2I	GAAGAC	3 cut(s)	713, 1320, 2217
BstX2I	RGATCY	1 cut(s)	2041
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	2041
BstZI	CGGCCG	1 cut(s)	880
BsuI	GTATCC	2 cut(s)	686, 1410
BsuRI	GGCC	9 cut(s)	147, 170, 183, 412, 882, 1335, 1346, 1503, 1539
BtgI	CCRYGG	1 cut(s)	1514
BtgZI	GCGATG	1 cut(s)	1805
BtrI	CACGTC	2 cut(s)	1957, 2444
BtsCI	GGATG	7 cut(s)	243, 394, 488, 677, 1378, 1609, 2277
BtsI	GCAGTG	1 cut(s)	1837
BtsIMutI	CAGTG	6 cut(s)	334, 631, 685, 1273, 1837, 2352
BveI	ACCTGC	2 cut(s)	328, 1144
Cac8I	GCNNGC	2 cut(s)	65, 809
CaiI	CAGNNNCTG	1 cut(s)	2292
Cfr13I	GGNCC	8 cut(s)	91, 145, 169, 182, 410, 831, 1345, 1502
CseI	GACGC	2 cut(s)	1466, 2331
Csp6I	GTAC	8 cut(s)	229, 301, 1136, 1145, 1305, 1465, 1586, 2462
CviQI	GTAC	8 cut(s)	229, 301, 1136, 1145, 1305, 1465, 1586, 2462
DpnI	GATC	9 cut(s)	401, 570, 677, 752, 849, 1341, 1662, 2043, 2118
DpnII	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
DrdI	GACNNNNNNGTC	2 cut(s)	2162, 2341
DseDI	GACNNNNNNGTC	2 cut(s)	2162, 2341
EaeI	YGGCCR	3 cut(s)	880, 1333, 1537
EagI	CGGCCG	1 cut(s)	880
EciI	GGCGGA	1 cut(s)	2119
Ecl136II	GAGCTC	2 cut(s)	629, 1721
EclXI	CGGCCG	1 cut(s)	880
Eco130I	CCWWGG	2 cut(s)	422, 1514
Eco24I	GRGCYC	4 cut(s)	549, 631, 1723, 1978
Eco31I	GGTCTC	1 cut(s)	959
Eco47I	GGWCC	2 cut(s)	91, 831
Eco52I	CGGCCG	1 cut(s)	880
Eco53kI	GAGCTC	2 cut(s)	629, 1721
Eco57I	CTGAAG	2 cut(s)	145, 1340
Eco72I	CACGTG	1 cut(s)	1535
Eco88I	CYCGRG	1 cut(s)	2238
EcoICRI	GAGCTC	2 cut(s)	629, 1721
EcoRI	GAATTC	2 cut(s)	1520, 1904
EcoRII	CCWGG	3 cut(s)	757, 1276, 1849
EcoT14I	CCWWGG	2 cut(s)	422, 1514
EcoT22I	ATGCAT	4 cut(s)	243, 561, 1653, 2063
EcoT38I	GRGCYC	4 cut(s)	549, 631, 1723, 1978
ErhI	CCWWGG	2 cut(s)	422, 1514
Esp3I	CGTCTC	2 cut(s)	890, 2398
FalI	AAGNNNNNCTT	2 cut(s)	1057, 1089
FaqI	GGGAC	1 cut(s)	1008
FbaI	TGATCA	1 cut(s)	399
FokI	GGATG	7 cut(s)	250, 401, 495, 684, 1365, 1596, 2284
FriOI	GRGCYC	4 cut(s)	549, 631, 1723, 1978
FspBI	CTAG	2 cut(s)	968, 2207
GsaI	CCCAGC	1 cut(s)	1975
GsuI	CTGGAG	3 cut(s)	345, 1764, 1942
HaeIII	GGCC	9 cut(s)	147, 170, 183, 412, 882, 1335, 1346, 1503, 1539
HapII	CCGG	8 cut(s)	68, 80, 172, 180, 1403, 1613, 1708, 1869
HgaI	GACGC	2 cut(s)	1466, 2331
HindIII	AAGCTT	1 cut(s)	1595
HinfI	GANTC	6 cut(s)	964, 1087, 1441, 1474, 2230, 2424
HpaII	CCGG	8 cut(s)	68, 80, 172, 180, 1403, 1613, 1708, 1869
HphI	GGTGA	6 cut(s)	23, 305, 665, 842, 1253, 1857
Hpy166II	GTNNAC	4 cut(s)	334, 1252, 1271, 2441
Hpy188I	TCNGA	5 cut(s)	87, 1062, 2146, 2251, 2364
Hpy8I	GTNNAC	4 cut(s)	334, 1252, 1271, 2441
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	7 cut(s)	160, 276, 1126, 1374, 1439, 1872, 2010
HpyCH4III	ACNGT	5 cut(s)	142, 1240, 1256, 1898, 2338
HpyCH4IV	ACGT	3 cut(s)	1534, 1956, 2443
HpyF10VI	GCNNNNNNNGC	8 cut(s)	37, 73, 458, 514, 1718, 1727, 2058, 2309
HpySE526I	ACGT	3 cut(s)	1534, 1956, 2443
Kpn2I	TCCGGA	1 cut(s)	1612
KpnI	GGTACC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
LmnI	GCTCC	2 cut(s)	253, 928
MaeI	CTAG	2 cut(s)	968, 2207
MaeII	ACGT	3 cut(s)	1534, 1956, 2443
MaeIII	GTNAC	7 cut(s)	11, 293, 653, 1577, 1622, 1784, 2194
MalI	GATC	9 cut(s)	401, 570, 677, 752, 849, 1341, 1662, 2043, 2118
MboI	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	2041
MhlI	GDGCHC	5 cut(s)	336, 549, 631, 1723, 1978
MlsI	TGGCCA	2 cut(s)	1335, 1539
MluNI	TGGCCA	2 cut(s)	1335, 1539
MlyI	GAGTC	1 cut(s)	1081
MmeI	TCCRAC	7 cut(s)	65, 275, 1222, 1745, 1894, 2157, 2342
Mox20I	TGGCCA	2 cut(s)	1335, 1539
Mph1103I	ATGCAT	4 cut(s)	243, 561, 1653, 2063
MroI	TCCGGA	1 cut(s)	1612
MscI	TGGCCA	2 cut(s)	1335, 1539
MseI	TTAA	8 cut(s)	57, 312, 342, 918, 978, 1385, 1410, 2400
MslI	CAYNNNNRTG	5 cut(s)	564, 589, 858, 1266, 1656
Msp20I	TGGCCA	2 cut(s)	1335, 1539
MspA1I	CMGCKG	4 cut(s)	204, 1102, 1302, 1421
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	8 cut(s)	68, 80, 172, 180, 1403, 1613, 1708, 1869
MspR9I	CCNGG	9 cut(s)	69, 81, 172, 180, 759, 1278, 1709, 1851, 1869
MunI	CAATTG	1 cut(s)	503
Mva1269I	GAATGC	4 cut(s)	1217, 2063, 2312, 2452
MvaI	CCWGG	3 cut(s)	759, 1278, 1851
MvnI	CGCG	2 cut(s)	1291, 2342
MwoI	GCNNNNNNNGC	8 cut(s)	37, 73, 458, 514, 1718, 1727, 2058, 2309
NciI	CCSGG	6 cut(s)	69, 81, 172, 180, 1709, 1869
NcoI	CCATGG	1 cut(s)	1514
NdeII	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	5 cut(s)	11, 293, 653, 1577, 1622
NsiI	ATGCAT	4 cut(s)	243, 561, 1653, 2063
NspI	RCATGY	1 cut(s)	1013
NspV	TTCGAA	1 cut(s)	599
OliI	CACNNNNGTG	2 cut(s)	589, 1266
PctI	GAATGC	4 cut(s)	1217, 2063, 2312, 2452
PfeI	GAWTC	5 cut(s)	964, 1441, 1474, 2230, 2424
PflFI	GACNNNGTC	1 cut(s)	1958
PflMI	CCANNNNNTGG	2 cut(s)	290, 1342
PfoI	TCCNGGA	1 cut(s)	757
PleI	GAGTC	1 cut(s)	1081
PmaCI	CACGTG	1 cut(s)	1535
PmlI	CACGTG	1 cut(s)	1535
PpsI	GAGTC	1 cut(s)	1081
Ppu21I	YACGTR	1 cut(s)	1535
Psp124BI	GAGCTC	2 cut(s)	631, 1723
Psp6I	CCWGG	3 cut(s)	757, 1276, 1849
PspCI	CACGTG	1 cut(s)	1535
PspFI	CCCAGC	1 cut(s)	1971
PspGI	CCWGG	3 cut(s)	757, 1276, 1849
PspPI	GGNCC	8 cut(s)	91, 145, 169, 182, 410, 831, 1345, 1502
PsrI	GAACNNNNNNTAC	2 cut(s)	2187, 2219
PstI	CTGCAG	2 cut(s)	1426, 2037
PstNI	CAGNNNCTG	1 cut(s)	2292
PsuI	RGATCY	1 cut(s)	2041
PsyI	GACNNNGTC	1 cut(s)	1958
PvuII	CAGCTG	4 cut(s)	204, 1102, 1302, 1421
RsaI	GTAC	8 cut(s)	230, 302, 1137, 1146, 1306, 1466, 1587, 2463
RsaNI	GTAC	8 cut(s)	229, 301, 1136, 1145, 1305, 1465, 1586, 2462
RseI	CAYNNNNRTG	5 cut(s)	564, 589, 858, 1266, 1656
SacI	GAGCTC	2 cut(s)	631, 1723
SaqAI	TTAA	8 cut(s)	57, 312, 342, 918, 978, 1385, 1410, 2400
Sau3AI	GATC	9 cut(s)	399, 568, 675, 750, 847, 1339, 1660, 2041, 2116
Sau96I	GGNCC	8 cut(s)	91, 145, 169, 182, 410, 831, 1345, 1502
SchI	GAGTC	1 cut(s)	1081
ScrFI	CCNGG	9 cut(s)	69, 81, 172, 180, 759, 1278, 1709, 1851, 1869
SduI	GDGCHC	5 cut(s)	336, 549, 631, 1723, 1978
SfcI	CTRYAG	2 cut(s)	1422, 2033
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	2 cut(s)	91, 831
SmiMI	CAYNNNNRTG	5 cut(s)	564, 589, 858, 1266, 1656
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SsiI	CCGC	4 cut(s)	669, 879, 1799, 2104
SspI	AATATT	2 cut(s)	493, 1738
SspMI	CTAG	2 cut(s)	968, 2207
SstI	GAGCTC	2 cut(s)	631, 1723
StyD4I	CCNGG	9 cut(s)	67, 79, 170, 178, 757, 1276, 1707, 1849, 1867
StyI	CCWWGG	2 cut(s)	422, 1514
TaaI	ACNGT	5 cut(s)	142, 1240, 1256, 1898, 2338
TaiI	ACGT	3 cut(s)	1537, 1959, 2446
TaqI	TCGA	6 cut(s)	129, 574, 599, 1090, 1227, 2171
TatI	WGTACW	5 cut(s)	228, 1144, 1304, 1464, 1585
TauI	GCSGC	2 cut(s)	882, 1802
TfiI	GAWTC	5 cut(s)	964, 1441, 1474, 2230, 2424
Tru1I	TTAA	8 cut(s)	57, 312, 342, 918, 978, 1385, 1410, 2400
Tru9I	TTAA	8 cut(s)	57, 312, 342, 918, 978, 1385, 1410, 2400
TscAI	CASTG	6 cut(s)	341, 638, 685, 1273, 1837, 2352
TseFI	GTSAC	5 cut(s)	11, 293, 653, 1577, 1622
Tsp45I	GTSAC	5 cut(s)	11, 293, 653, 1577, 1622
TspDTI	ATGAA	9 cut(s)	870, 1179, 1326, 1421, 1589, 1746, 2091, 2204, 2416
TspRI	CASTG	6 cut(s)	341, 638, 685, 1273, 1837, 2352
Tth111I	GACNNNGTC	1 cut(s)	1958
Van91I	CCANNNNNTGG	2 cut(s)	290, 1342
Vha464I	CTTAAG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	91, 831
XapI	RAATTY	5 cut(s)	524, 1520, 1904, 2177, 2410
XbaI	TCTAGA	2 cut(s)	967, 2206
XceI	RCATGY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1512
XspI	CTAG	2 cut(s)	968, 2207
Zsp2I	ATGCAT	4 cut(s)	243, 561, 1653, 2063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.