Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300129.1

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 681

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

gtatttgattggatgcaataatattctggctcaattgcatacaaagcacccagaattttgtgataaagttggtgggctcttagcaatgcatatagatgatcttcgagcattggcacctatgtggctttcgaaaacagaagaagtgcgagaagatagagctcactggggaactaatataactggtgacatttattcaagcggatggatcagtgagatgtatggatactcttttggtgcagcagaggttggtcttcggcacaaaataaatgataacttgatgatctatccaggatatattccacaagagggtgttgtgcctattcttcttcactatggcttgccatttagcgtgggaaattggtcctttagtaaattagatcaccatgaagatggtattgtttatgactgcggccgtctctttcctgaacctccttatccaaaagaggtatgcgttctgaatccaatagacaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.76

Weight (kDa)

5.36

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	2 cut(s)	199, 409
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	195, 372
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	79, 161
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	2 cut(s)	196, 384
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	238, 410
BlsI	GCNGC	2 cut(s)	239, 411
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	168, 185
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	18, 207
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	168, 185
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	420
BsmBI	CGTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	79, 161
Bsp143I	GATC	4 cut(s)	98, 205, 280, 377
BspACI	CCGC	2 cut(s)	199, 409
BspANI	GGCC	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	168, 185
BssMI	GATC	4 cut(s)	98, 205, 280, 377
Bst2UI	CCWGG	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	18, 207
BstKTI	GATC	4 cut(s)	101, 208, 283, 380
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	4 cut(s)	98, 205, 280, 377
BstMCI	CGRYCG	1 cut(s)	413
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstZI	CGGCCG	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	18, 207
BtsIMutI	CAGTG	2 cut(s)	161, 215
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	361
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	6 cut(s)	30, 77, 125, 159, 337, 412
CviKI_1	RGCY	6 cut(s)	30, 77, 125, 159, 337, 412
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	4 cut(s)	100, 207, 282, 379
DpnII	GATC	4 cut(s)	98, 205, 280, 377
EaeI	YGGCCR	1 cut(s)	410
EagI	CGGCCG	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	79, 161
Eco47I	GGWCC	1 cut(s)	361
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	79, 161
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	1 cut(s)	387
FatI	CATG	1 cut(s)	383
Fnu4HI	GCNGC	2 cut(s)	238, 410
FokI	GGATG	2 cut(s)	25, 214
FriOI	GRGCYC	2 cut(s)	79, 161
Fsp4HI	GCNGC	2 cut(s)	238, 410
GluI	GCNGC	2 cut(s)	238, 410
HaeIII	GGCC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	1 cut(s)	458
HphI	GGTGA	2 cut(s)	195, 372
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	16, 38, 89, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	98, 205, 280, 377
LpnPI	CCDG	7 cut(s)	12, 64, 149, 166, 274, 301, 436
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	3
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	4 cut(s)	100, 207, 282, 379
MboI	GATC	4 cut(s)	98, 205, 280, 377
MboII	GAAGA	7 cut(s)	93, 150, 162, 243, 315, 318, 399
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	79, 161
MluCI	AATT	4 cut(s)	33, 54, 356, 372
MnlI	CCTC	4 cut(s)	236, 299, 437, 439
Mph1103I	ATGCAT	1 cut(s)	91
MslI	CAYNNNNRTG	3 cut(s)	94, 119, 388
MspR9I	CCNGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	4 cut(s)	98, 205, 280, 377
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	239, 411
Psp124BI	GAGCTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	361
RseI	CAYNNNNRTG	3 cut(s)	94, 119, 388
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	2 cut(s)	238, 410
Sau3AI	GATC	4 cut(s)	98, 205, 280, 377
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	79, 161
SetI	ASST	5 cut(s)	119, 161, 247, 431, 448
SfaNI	GCATC	1 cut(s)	3
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	94, 119, 388
Sse9I	AATT	4 cut(s)	33, 54, 356, 372
SsiI	CCGC	2 cut(s)	199, 409
SspI	AATATT	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	287
TaqI	TCGA	2 cut(s)	104, 129
TasI	AATT	4 cut(s)	33, 54, 356, 372
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	458
TscAI	CASTG	2 cut(s)	168, 215
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	168, 215
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.